ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL15_LACPL (Q88XW7) 50S ribosomal protein L15 30 2.3
2ARX1_ASHGO (Q74ZU6) Probable metalloprotease ARX1 (EC 3.-.-.-) (... 29 3.9
3ACES_CHICK (P36196) Acetylcholinesterase precursor (EC 3.1.1.7) ... 28 5.0
4ARX1_CANGA (Q6FL44) Probable metalloprotease ARX1 (EC 3.-.-.-) (... 28 6.6

>RL15_LACPL (Q88XW7) 50S ribosomal protein L15|
          Length = 143

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 71  TPSPGSRIGRRRLFAAGQSQGAIMASNTGASGW-LRGKVK 187
           TPS GSR  RRR+   G S G    S  G  G   RGKV+
Sbjct: 7   TPSEGSRFSRRRI-GRGDSSGQGKTSGRGQKGQKARGKVR 45



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>ARX1_ASHGO (Q74ZU6) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 591

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 80  PGSRIGRRRLFAAGQSQGAIMASNTGASGWLRGKVKA 190
           PGSR+ R R F AGQ++G +   +     W     +A
Sbjct: 246 PGSRVRRVRRFLAGQNEGVVAERDIKGVHWTEAHQEA 282



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>ACES_CHICK (P36196) Acetylcholinesterase precursor (EC 3.1.1.7) (AChE)|
          Length = 767

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 59  PAGQTPSPGSRIGRRRLFAAGQSQGAIMASNTGASGWLRGKVKA 190
           P G   + G+  GRRR  A G++ G    + T   G LRGK  A
Sbjct: 256 PNGPWATIGAAEGRRRAAALGRAVGCPYGNETEFLGCLRGKEAA 299



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>ARX1_CANGA (Q6FL44) Probable metalloprotease ARX1 (EC 3.-.-.-) (Associated|
           with ribosomal export complex protein 1)
          Length = 588

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 80  PGSRIGRRRLFAAGQSQGAIMASNTGASGWLRGKVKA 190
           PGSR+ R R F AGQ++G +   +     W     +A
Sbjct: 241 PGSRVRRIRRFLAGQNEGIVAEKDYKGVVWTEAHQEA 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,627,252
Number of Sequences: 219361
Number of extensions: 473119
Number of successful extensions: 1804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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