ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBS2_CHLRE (P08475) Ribulose bisphosphate carboxylase small chai... 28 4.7
2RBS1_CHLRE (P00873) Ribulose bisphosphate carboxylase small chai... 28 4.7

>RBS2_CHLRE (P08475) Ribulose bisphosphate carboxylase small chain 2,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 2)
          Length = 185

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 183 FASTRCL--DGQRWLVLKQDLFGSKPRISTPREIPICDDIWPE 61
           F S  CL  D + W + K  +FG +  +   REI  C   +P+
Sbjct: 105 FGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPD 147



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>RBS1_CHLRE (P00873) Ribulose bisphosphate carboxylase small chain 1,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 1)
          Length = 185

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 183 FASTRCL--DGQRWLVLKQDLFGSKPRISTPREIPICDDIWPE 61
           F S  CL  D + W + K  +FG +  +   REI  C   +P+
Sbjct: 105 FGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPD 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,687,663
Number of Sequences: 219361
Number of extensions: 522232
Number of successful extensions: 1661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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