ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40g09 |
|---|---|
| Clone Library Name | barley_pub |
>AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 366 Score = 31.2 bits (69), Expect = 0.63 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 313 SILTSDISRSCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 188 SILT I RSC K ++ R ++ LL+ FG ++E Sbjct: 217 SILTDAIKRSCQHKAEVVEEDERESGMRALLNLGHTFGHAIE 258
>SLAP_BACCI (P35824) S-layer-related protein precursor| Length = 1616 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +3 Query: 15 KSRGKQPRSYAKVPKQSLSGKGSDRAMTT-RRWAWKQPP 128 + R K+ R K+ ++ GS R +T RRW+W +PP Sbjct: 1369 RRRNKRNRRLRKLRPKNRKLAGSGRPLTAPRRWSWTRPP 1407
>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1338 Score = 28.9 bits (63), Expect = 3.1 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +3 Query: 84 DRAMTTRRWAWKQPPFEESVIAHW 155 +RA+ +WAW+ PPF+ + W Sbjct: 1299 ERAVRPWQWAWRPPPFDTLTTSPW 1322
>CP305_DROME (Q9VW43) Probable cytochrome P450 305a1 (EC 1.14.-.-) (CYPCCCVA1)| Length = 504 Score = 28.1 bits (61), Expect = 5.4 Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 5/131 (3%) Frame = -1 Query: 384 LTERRKPSTGRRSCFSQDFSLLMSAFSLLISPGLVTKN-----LPRLTERPATDT*KSCF 220 L E + S G S + L+M+ I+ T N L L RP D + F Sbjct: 279 LQEMKDRSAGGESSTFNETQLVMTILDFFIAGSQTTSNTINLALMVLAMRP--DVQEKLF 336 Query: 219 QGLVASVNHLSPETFSVPWS*TSELLRFLQRVAASRPTSWLSSLDHFLFH*VIA*GP*RT 40 + ASV S + F +R A +++ + F FH GP R Sbjct: 337 SQVTASVAAASTDAFP----------HLSRREAFDYMDAFIMEVQRF-FHITPITGPRRA 385 Query: 39 IWAVSLSTLDL 7 +WA L D+ Sbjct: 386 LWATKLGGYDI 396
>SP3AE_BACSU (P49782) Stage III sporulation protein AE| Length = 405 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 171 VPWS*TSELLRFLQRVAASRPTSWLSSLDHFLFH*VIA*G 52 +P S L+ F+ + P WL +L +LFH V+A G Sbjct: 69 LPESQKGSLMEFINGDKSFSPQEWLKALFSYLFHEVLANG 108
>CLCC_ARATH (Q96282) Chloride channel protein CLC-c (AtCLC-c)| Length = 779 Score = 28.1 bits (61), Expect = 5.4 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Frame = +3 Query: 120 QPPFEESV----IAHWSSSMAPKMSQGSSDSPKRRDLESSFFK-CQ*RDV--LSIGEGFW 278 +PPF E+ IA S + + QG S +R S + C+ RD +G+G Sbjct: 636 EPPFTEASELCGIALRSHLLV--LLQGKKFSKQRTTFGSQILRSCKARDFGKAGLGKGLK 693 Query: 279 *QDLEISEVRMLT*VTRNPVKNT 347 +DL++SE M V +P+ NT Sbjct: 694 IEDLDLSEEEMEMYVDLHPITNT 716
>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22| Length = 954 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/71 (26%), Positives = 31/71 (43%) Frame = +3 Query: 12 PKSRGKQPRSYAKVPKQSLSGKGSDRAMTTRRWAWKQPPFEESVIAHWSSSMAPKMSQGS 191 P + RSY++ P KG+ + R ++ + + + S S +P +S GS Sbjct: 859 PSRSYSRSRSYSRSPSPRPKSKGAKGRSSYRAASYSRSRSPVRRVGY-SRSRSPSVSGGS 917 Query: 192 SDSPKRRDLES 224 S SP R S Sbjct: 918 SRSPSRSPCRS 928
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = +3 Query: 12 PKSRGKQPRSYAKVPKQSL--------SGKGSDRAMTTRRWAWKQPPFEESVIAHWSSSM 167 P RG PRS PK+S SG G ++ R ++ PP E + + + Sbjct: 145 PVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYL 204 Query: 168 AP-------KMSQGSSDSPKRRD 215 +P K S S D P RD Sbjct: 205 SPRDDGYSTKDSYSSRDYPSSRD 227
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = +3 Query: 12 PKSRGKQPRSYAKVPKQSL--------SGKGSDRAMTTRRWAWKQPPFEESVIAHWSSSM 167 P RG PRS PK+S SG G ++ R ++ PP E + + + Sbjct: 145 PVKRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRGRDSYGGPPRREPLPSRRDVYL 204 Query: 168 AP-------KMSQGSSDSPKRRD 215 +P K S S D P RD Sbjct: 205 SPRDDGYSTKDSYSSRDYPSSRD 227
>GR39B_DROME (P58960) Putative gustatory receptor 39b| Length = 369 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +1 Query: 124 HPLKKA**LTGLAPWHRKCLRAQVIHRSDETLKAAFSSVSSGT---FCQSGKVF 276 HP K L GL PW C +++ + + + ++V G F QS ++F Sbjct: 6 HPYLKYFALLGLVPWSESCAQSKFVQKVYSAILIILNAVHFGISIYFPQSAELF 59
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 27.3 bits (59), Expect = 9.1 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Frame = +3 Query: 12 PKSRGKQPRSYAKVPKQSL--------SGKGSDRAMTTRRWAWKQPPFEESVIAHWSSSM 167 P RG PRS PK+S SG G ++ R ++ PP E + + + Sbjct: 148 PVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYL 207 Query: 168 AP-------KMSQGSSDSPKRRD 215 +P K S S D P RD Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRD 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,547,889 Number of Sequences: 219361 Number of extensions: 1018098 Number of successful extensions: 2689 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2689 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
