Clone Information

BLAST Search Result

Clone Name	bastl40g06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [U...	125	6e-29
2	CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [U...	124	8e-29
3	CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [U...	122	3e-28
4	CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [U...	122	4e-28
5	CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [U...	120	2e-27
6	CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic sub...	113	2e-25
7	CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic sub...	106	3e-23
8	CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [U...	97	2e-20
9	CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [U...	71	1e-12
10	CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [U...	52	9e-07
11	MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-in...	32	0.73
12	SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) ...	32	0.95
13	RNF4_HUMAN (P78317) RING finger protein 4	31	1.6
14	MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-in...	31	1.6
15	RNF4_MOUSE (Q9QZS2) RING finger protein 4	30	2.1
16	RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2....	30	2.1
17	IBRD1_HUMAN (Q8TC41) IBR domain-containing protein 1	30	2.1
18	YL053_MIMIV (Q5UPC9) Hypothetical protein L53	30	2.8
19	RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	30	2.8
20	RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2....	30	3.6
21	RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger...	30	3.6
22	JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem...	30	3.6
23	RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2....	30	3.6
24	RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger p...	30	3.6
25	RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger...	30	3.6
26	RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger...	30	3.6
27	RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	30	3.6
28	RNF4_RAT (O88846) RING finger protein 4 (SNURF)	29	4.7
29	RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (...	29	4.7
30	RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	4.7
31	RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	4.7
32	RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	4.7
33	RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	4.7
34	JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylatio...	29	6.2
35	JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylatio...	29	6.2
36	MAT1_MARGL (P51950) CDK-activating kinase assembly factor MAT1 (...	29	6.2
37	CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog	29	6.2
38	CN004_HUMAN (Q9H1B7) Protein C14orf4	29	6.2
39	JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation ...	29	6.2
40	RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiat...	29	6.2
41	RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A ...	28	8.1
42	CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic ...	28	8.1

>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-1) (Radially swollen protein 1)
           (AtRSW1)
          Length = 1081

 Score =  125 bits (313), Expect = 6e-29
 Identities = 57/98 (58%), Positives = 67/98 (68%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           LVAGS+ RNELV IR + + G +PLK  N   CQIC            FVACNECAFPVC
Sbjct: 7   LVAGSYRRNELVRIRHESDGGTKPLKNMNGQICQICGDDVGLAETGDVFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           R CYEYER++GTQ CPQCK + +R +G  RV GDE+ED
Sbjct: 67  RPCYEYERKDGTQCCPQCKTRFRRHRGSPRVEGDEDED 104

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>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-7) (Irregular xylem protein 3)
           (AtIRX3)
          Length = 1026

 Score =  124 bits (312), Expect = 8e-29
 Identities = 59/98 (60%), Positives = 67/98 (68%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           LVAGSHNRNELVVI    EP  +PLK  +   C+IC            FVACNEC FP C
Sbjct: 7   LVAGSHNRNELVVIHNHEEP--KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPAC 64

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           R CYEYERREGTQNCPQCK + +RL+G  RV GDE+E+
Sbjct: 65  RPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEE 102

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>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2)
           (Protein PROCUSTE1) (Protein Quill) (AraxCelA)
          Length = 1084

 Score =  122 bits (307), Expect = 3e-28
 Identities = 57/98 (58%), Positives = 65/98 (66%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R +++ +   CQIC            FVACNECAFPVC
Sbjct: 7   LIAGSHNRNEFVLINADENARIRSVQELSGQTCQICRDEIELTVDGEPFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           R CYEYERREG Q CPQCK + +RLKG  RV GDEEED
Sbjct: 67  RPCYEYERREGNQACPQCKTRFKRLKGSPRVEGDEEED 104

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>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-5)
          Length = 1069

 Score =  122 bits (306), Expect = 4e-28
 Identities = 55/98 (56%), Positives = 66/98 (67%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R +++ +   CQIC            FVACNECAFPVC
Sbjct: 7   LIAGSHNRNEFVLINADESARIRSVEELSGQTCQICGDEIELSVDGESFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           R CYEYERREG Q+CPQCK + +R+KG  RV GDEE+D
Sbjct: 67  RPCYEYERREGNQSCPQCKTRYKRIKGSPRVEGDEEDD 104

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>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-2) (Ath-A)
          Length = 1084

 Score =  120 bits (300), Expect = 2e-27
 Identities = 54/98 (55%), Positives = 65/98 (66%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R +++ +   CQIC            FVACNECAFPVC
Sbjct: 7   LIAGSHNRNEFVLINADESARIRSVQELSGQTCQICGDEIELTVSSELFVACNECAFPVC 66

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           R CYEYERREG Q CPQCK + +R+KG  RV GD+EE+
Sbjct: 67  RPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDDEEE 104

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>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score =  113 bits (283), Expect = 2e-25
 Identities = 51/98 (52%), Positives = 62/98 (63%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           L+AGSHNRNE V+I  D     R  ++ +   C+IC            F+ACNECAFP C
Sbjct: 7   LIAGSHNRNEFVLINADDTARIRSAEELSGQTCKICRDEIELTDNGEPFIACNECAFPTC 66

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           R CYEYERREG Q CPQC  + +R+KG  RV GDEE+D
Sbjct: 67  RPCYEYERREGNQACPQCGTRYKRIKGSPRVEGDEEDD 104

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>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13)
          Length = 1065

 Score =  106 bits (264), Expect = 3e-23
 Identities = 49/98 (50%), Positives = 61/98 (62%)
 Frame = +3

Query: 156 LVAGSHNRNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVC 335
           +VAGS+ R E V  R D + G +PLK  N   CQIC            FVACNEC FP+C
Sbjct: 1   MVAGSYRRYEFVRNRDDSDDGLKPLKDLNGQICQICGDDVGLTKTGNVFVACNECGFPLC 60

Query: 336 RDCYEYERREGTQNCPQCKNQIQRLKGCARVPGDEEED 449
           + CYEYER++G+Q CPQCK + +R  G  RV  DE+ED
Sbjct: 61  QSCYEYERKDGSQCCPQCKARFRRHNGSPRVEVDEKED 98

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>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1
           protein 1) (Isoxaben resistant protein 1) (Ath-B)
          Length = 1065

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 40/82 (48%), Positives = 53/82 (64%)
 Frame = +3

Query: 204 DGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCP 383
           +GE   +P+K      CQIC            FVAC+ C+FPVCR CYEYER++G Q+CP
Sbjct: 4   EGETAGKPMKNIVPQTCQICSDNVGKTVDGDRFVACDICSFPVCRPCYEYERKDGNQSCP 63

Query: 384 QCKNQIQRLKGCARVPGDEEED 449
           QCK + +RLKG   +PGD++ED
Sbjct: 64  QCKTRYKRLKGSPAIPGDKDED 85

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>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 28/66 (42%), Positives = 38/66 (57%)
 Frame = +3

Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKNQIQRLKGCARVP 431
           C++C            FVAC+ C +PVC+ CYEYER  G + CPQC    +R KG  ++ 
Sbjct: 23  CKVCGDEVKDDDNGQTFVACHVCVYPVCKPCYEYERSNGNKCCPQCNTLYKRHKGSPKIA 82

Query: 432 GDEEED 449
           GDEE +
Sbjct: 83  GDEENN 88

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>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-8) (Irregular xylem protein 1)
           (AtIRX1)
          Length = 985

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +3

Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCKN 395
           C  C            FVAC+EC+FP+C+ C EYE +EG + C +C N
Sbjct: 9   CNTCGEEIGVKSNGEFFVACHECSFPICKACLEYEFKEGRRICLRCGN 56

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>MYRIP_MOUSE (Q8K3I4) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting|
           protein) (Exophilin-8) (Slp homolog lacking C2 domains
           c)
          Length = 856

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQCK 392
           C EC F VC+ C  Y++ E    C  C+
Sbjct: 81  CGECKFSVCKSCCSYQKHEKLWVCCVCQ 108

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>SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)|
          Length = 671

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 22/79 (27%), Positives = 30/79 (37%)
 Frame = +3

Query: 177 RNELVVIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYE 356
           +NEL+ I+R G    R  +  +   C  C               C  C   VCRDC   +
Sbjct: 40  KNELLEIKRKG--AKRGSQHYSDRTCARCQESLGRLSPKTN--TCRGCNHLVCRDC-RIQ 94

Query: 357 RREGTQNCPQCKNQIQRLK 413
              GT  C  C  +I+  K
Sbjct: 95  ESNGTWRCKVCAKEIELKK 113

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>RNF4_HUMAN (P78317) RING finger protein 4|
          Length = 190

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 15/68 (22%), Positives = 23/68 (33%)
 Frame = +3

Query: 198 RRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 377
           R   + GA  L+     +C IC             +   EC    C  C   +  +    
Sbjct: 114 RNARDEGATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 172

Query: 378 CPQCKNQI 401
           CP C+ +I
Sbjct: 173 CPTCRKKI 180

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>MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting|
           protein) (Exophilin-8) (Slp homolog lacking C2 domains
           c)
          Length = 859

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQCK 392
           C +C F VC+ C  Y++ E    C  C+
Sbjct: 81  CGDCKFNVCKSCCSYQKHEKAWVCCVCQ 108

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>RNF4_MOUSE (Q9QZS2) RING finger protein 4|
          Length = 194

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/66 (24%), Positives = 22/66 (33%)
 Frame = +3

Query: 204 DGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCP 383
           DG  G RP       +C IC             +   EC    C  C   +  +    CP
Sbjct: 123 DGATGPRP---SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANTCP 178

Query: 384 QCKNQI 401
            C+ +I
Sbjct: 179 TCRKKI 184

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>RPOB_THEAC (Q03587) DNA-directed RNA polymerase subunit B (EC 2.7.7.6)|
          Length = 1195

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 318  CAFPVCRDCYEYERREGTQNCPQCKN 395
            C  P C     Y+RR+GT  CP C N
Sbjct: 1135 CGNPSCGHIAIYDRRKGTLRCPVCGN 1160

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>IBRD1_HUMAN (Q8TC41) IBR domain-containing protein 1|
          Length = 275

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 17/57 (29%)
 Frame = +3

Query: 300 FVACNECAFPVCR--DCYEYER---------------REGTQNCPQCKNQIQRLKGC 419
           FV C +C  P     +C EY++               +   Q CP+CK  IQR +GC
Sbjct: 88  FVWCFKCHSPWHEGVNCKEYKKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGC 144

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>YL053_MIMIV (Q5UPC9) Hypothetical protein L53|
          Length = 100

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +3

Query: 252 CQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQNCPQCK 392
           C+IC            F++C E   PV   CYE      T  C  CK
Sbjct: 7   CKICCASAKKCCDEPVFISCREKCEPVIYKCYEICEPVCTPVCKPCK 53

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>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)|
           (dRING protein) (Sex comb extra protein)
          Length = 435

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 17/70 (24%), Positives = 23/70 (32%)
 Frame = +3

Query: 192 VIRRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGT 371
           VI    E    P    +   C IC             +   EC    C DC     R G 
Sbjct: 26  VITDSTEIAVSPRSLHSELMCPICLDMLKKT------MTTKECLHRFCSDCIVTALRSGN 79

Query: 372 QNCPQCKNQI 401
           + CP C+ ++
Sbjct: 80  KECPTCRKKL 89

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>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger|
           protein 2-A) (RING finger protein 1B-A) (RING1b-A)
          Length = 344

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 377

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 34  ECLHRFCSDCIVTALRSGNKECPTCRKKL 62

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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C) (Thyroid receptor-interacting protein 8)
            (TRIP-8)
          Length = 2540

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 309  CNECAFPVCRDCYEYERREGTQN 377
            C +C F VC DCY+ + R+ +++
Sbjct: 1860 CQKCGFVVCLDCYKAKERKSSRD 1882

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>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger|
           protein 2-B) (RING finger protein 1B-B) (RING1b-B)
          Length = 343

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 62  ECLHRFCSDCIVTALRSGNKECPTCRKKL 90

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>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)|
           (Transcription repressor Ring1A)
          Length = 406

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger|
           protein 1) (RING1a)
          Length = 406

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 63  ECLHRFCSDCIVTALRSGNKECPTCRKKL 91

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>RNF4_RAT (O88846) RING finger protein 4 (SNURF)|
          Length = 194

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/68 (20%), Positives = 22/68 (32%)
 Frame = +3

Query: 198 RRDGEPGARPLKQQNRGACQICXXXXXXXXXXXXFVACNECAFPVCRDCYEYERREGTQN 377
           R   + G   L+     +C IC             +   EC    C  C   +  +    
Sbjct: 118 RSTKDEGTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKNANT 176

Query: 378 CPQCKNQI 401
           CP C+ +I
Sbjct: 177 CPTCRKKI 184

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>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 308

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b) (RING
           finger protein BAP-1) (DinG protein)
           (Huntingtin-interacting protein 2-interacting protein 3)
           (HIP2-interacting protein 3)
          Length = 336

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQI 401
           EC    C DC     R G + CP C+ ++
Sbjct: 66  ECLHRFCADCIITALRSGNKECPTCRKKL 94

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>JHD2A_HUMAN (Q9Y4C1) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1321

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386
           C  C F VC DCY  +R+    NC Q
Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697

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>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1323

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386
           C  C F VC DCY  +R+    NC Q
Sbjct: 676 CPRCGFGVCVDCYRMKRK----NCQQ 697

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>MAT1_MARGL (P51950) CDK-activating kinase assembly factor MAT1 (RING finger|
           protein MAT1) (Menage a trois) (CDK7/cyclin H assembly
           factor)
          Length = 324

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 312 NECAFPVCRDCYEYERREGTQNCPQCKNQIQR 407
           N C   +C +C E     G+ +CP C   ++R
Sbjct: 25  NVCGHTLCENCVEILFVRGSGSCPSCNTPLRR 56

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>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog|
          Length = 775

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 327 PVCRDCYEYERREGTQNCPQCKNQIQRLKGC---ARVPG 434
           PVCR C  YE  +  +   +   Q++R  GC    R PG
Sbjct: 33  PVCRGCVNYEGADRIEFVIETARQLKRAHGCFQDGRSPG 71

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>CN004_HUMAN (Q9H1B7) Protein C14orf4|
          Length = 796

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 327 PVCRDCYEYERREGTQNCPQCKNQIQRLKGC---ARVPG 434
           PVCR C  YE  +  +   +   Q++R  GC    R PG
Sbjct: 33  PVCRGCVNYEGADRIEFVIETARQLKRAHGCFQDGRSPG 71

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>JHD2A_RAT (Q63679) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
           (Testis-specific gene A protein) (Zinc-finger protein
           TSGA)
          Length = 1214

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 CNECAFPVCRDCYEYERREGTQNCPQ 386
           C  C F VC DCY  +R+    NC Q
Sbjct: 560 CPRCGFGVCVDCYRLKRK----NCQQ 581

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>RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiation sensitivity|
            protein 5) (Revertibility protein 2)
          Length = 1169

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +3

Query: 315  ECAFPVCRDC-YEYERREGTQN----CPQCKNQIQRLKGCARV 428
            EC    C  C +EY   + ++N    CP C+NQI   +  A V
Sbjct: 931  ECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDACRLLALV 973

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>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21)
          Length = 470

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 315 ECAFPVCRDCYEYERREGTQNCPQCKNQ 398
           EC    C++C     + G  +CP+C+ Q
Sbjct: 34  ECGHCFCKECIFEVGKNGGSSCPECRQQ 61

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>CAH3_HUMAN (P07451) Carbonic anhydrase 3 (EC 4.2.1.1) (Carbonic anhydrase III)|
           (Carbonate dehydratase III) (CA-III)
          Length = 259

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 318 CAFPVCRDCYEYERREGTQNCPQC 389
           C FP CRD + Y+    T  C +C
Sbjct: 181 CLFPACRDYWTYQGSFTTPPCEEC 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,099,908
Number of Sequences: 219361
Number of extensions: 390539
Number of successful extensions: 1449
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result