ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40f10 |
|---|---|
| Clone Library Name | barley_pub |
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 34.3 bits (77), Expect = 0.13 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 209 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 114 PP PN +PTS+ T PP P+ SIH F Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 32.0 bits (71), Expect = 0.65 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 161 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAAGAPGARGSEPRDPGSPRG--SEEPGKKRHERLFHRQD------AL 76 Query: 162 WSCTCASGTDGIRP 203 W T ++GT G P Sbjct: 77 WISTSSAGTGGAEP 90
>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)| (Basic transcription element-binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T-lymphocytes 1) (RFLAT-1) (Erythroid transcription factor FKLF-2) Length = 289 Score = 30.8 bits (68), Expect = 1.5 Identities = 26/74 (35%), Positives = 30/74 (40%) Frame = +3 Query: 9 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 188 +P PP P G P PG+ GA S SEP + A P AG SG Sbjct: 97 LPPAPPAPPPGPEPASPGQAGAPAA---PPSPAWSEP--EAALEQEPGPAG------SGE 145 Query: 189 DGIRPRREDGRQAA 230 G+R R GR A Sbjct: 146 PGLRQRGRRGRSRA 159
>DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 145 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +3 Query: 63 RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR 206 R+G R W AA +EPLVD + R RA G T A+G G + R Sbjct: 86 RKGRRPTWNAAAPGDVAEPLVDEV-VARLRALG--ATVATGRFGAQMR 130
>DTD_STRCO (Q9K4F6) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 141 Score = 30.0 bits (66), Expect = 2.5 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Frame = +3 Query: 63 RRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR---REDGRQAAL 233 R+G R W AA +EPLVD + + RA G T A+G G + R DG L Sbjct: 82 RKGRRPTWNAAAPGDVAEPLVDEV-VAQLRALG--ATVATGRFGAQMRVSLTNDGPFTVL 138 Query: 234 VAV 242 V V Sbjct: 139 VEV 141
>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1192 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 116 ++PS P DP GA GR G RG W A + S + Sbjct: 522 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 555
>CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CSRP2-binding| protein) (CRP2BP) (CRP2-binding partner) Length = 782 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 18 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADIN 143 PPP + + P + GR+ RG Q +S E DR DI+ Sbjct: 386 PPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 427
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 30.0 bits (66), Expect = 2.5 Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 17/113 (15%) Frame = -1 Query: 431 PKPTSAR*SLTSVFXLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPXXXXXX 279 P+ T+ +L + D +T++G V STG TV DV P Sbjct: 425 PESTTTSPTLNTTGFADPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSG 484 Query: 278 XXXXXXXVHNDEDGDEGRLPS-------IFPPRPNAISPTSTCTGP-PRCTRP 144 ++G E + P + P PNA SPT T P P T P Sbjct: 485 ASPVTPSPSPWDNGTESKAPDMTSSTSPVTTPTPNATSPTPAVTTPTPNATSP 537
>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1043 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSE 116 ++PS P DP GA GR G RG W A + S + Sbjct: 372 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 405
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 29.6 bits (65), Expect = 3.2 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 161 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD------AL 76 Query: 162 WSCTCASGTDGIRP 203 W T ++G G P Sbjct: 77 WISTSSAGAGGAEP 90
>VCAP_EBV (P03226) Major capsid protein (MCP)| Length = 1381 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +3 Query: 213 DGRQAALVAVFVVVHDDHRRGVCGALRGGRLDDDVVHRLPGR-ADFKQEVGATRGI 377 DGR+ + F+VV + H+ + + LD +++H +P ++ + VGA + + Sbjct: 106 DGRRPSKQRTFIVVKNCHKHHISTEMELSMLDLEILHSIPETPVEYAEYVGAVKTV 161
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.6 bits (65), Expect = 3.2 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEAASQQSSEPLVDRADINRPRAAG 161 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD------AL 76 Query: 162 WSCTCASGTDGIRP 203 W T ++G G P Sbjct: 77 WISTSSAGAGGAEP 90
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.6 bits (65), Expect = 3.2 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Frame = -1 Query: 338 STGKTVD--DVIIQAPXXXXXXXXXXXXXVHNDEDGDEGRLP-------SIFPPRPNAIS 186 STG TV DV P ++G E + P ++ P PNA S Sbjct: 463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS 522 Query: 185 PTSTCTGP-PRCTRP 144 PT T P P T P Sbjct: 523 PTPAVTTPTPNATSP 537
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.6 bits (65), Expect = 3.2 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Frame = -1 Query: 338 STGKTVD--DVIIQAPXXXXXXXXXXXXXVHNDEDGDEGRLP-------SIFPPRPNAIS 186 STG TV DV P ++G E + P ++ P PNA S Sbjct: 463 STGPTVSTADVTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS 522 Query: 185 PTSTCTGP-PRCTRP 144 PT T P P T P Sbjct: 523 PTPAVTTPTPNATSP 537
>MINC_XANAC (Q8PN47) Probable septum site-determining protein minC| Length = 249 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 140 S P PPP P A P P R A G Q A + + + D+ Sbjct: 119 SPPPPPPPPPARAEPAPPAARPAPGRMQRTAVRSGQQLYAENCDL 163
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 29.3 bits (64), Expect = 4.2 Identities = 20/48 (41%), Positives = 23/48 (47%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRP 149 S PSPP RDP G Q PG + G+ + A SE R D RP Sbjct: 353 SEPSPPVRDPEGVT-QAPGVEPSNGLEKPARELNGSEAATPR-DSPRP 398
>GCSP_MYCPA (Q73ZQ6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 941 Score = 29.3 bits (64), Expect = 4.2 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Frame = +3 Query: 183 GTDGIRP--RREDGRQAALVAVF--VVVHDDHRRGVCGALRGGRLDDDVVHRLPGRADFK 350 G +G+ RR G A+ A VVHD R D V+ R+PGRAD Sbjct: 353 GAEGLTAIARRVHGHAEAIAAALGTAVVHD-------------RYFDTVLARVPGRADEV 399 Query: 351 QEVGATRGINIQXED 395 RGIN+ D Sbjct: 400 IAAAKARGINLWRVD 414
>XKR6_HUMAN (Q5GH73) XK-related protein 6| Length = 641 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +3 Query: 9 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 128 IP PP +P+ AP++PG RG + A ++Q + D Sbjct: 520 IPLPPDVEPM--APEIPGYRGTQVTPTRAVTEQQEDLTAD 557
>CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 447 Score = 28.9 bits (63), Expect = 5.5 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +3 Query: 18 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSC 170 PPP G P+ PG R RG + SQQ+S +V + IN G C Sbjct: 208 PPPNRQAGGLPRFPGSRSHRGAVID--SQQASGTIV-QIVINNKHKHGQVC 255
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.9 bits (63), Expect = 5.5 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 12 PSPPPRDPLGAAPQLPGRRGARG 80 PS PPR GAAPQ P R+ G Sbjct: 397 PSTPPRASSGAAPQTPKRKKGLG 419
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 28.9 bits (63), Expect = 5.5 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 201 PRREDGRQAALVAVFVVVHDDHRRGVCG-ALR---GGRLDDDVVHRLPGRADFKQEVGAT 368 P R + R+ V +V+ R+G+ ALR G L +V + + G T Sbjct: 202 PIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREDDCGTT 261 Query: 369 RGINIQXEDGGQGS 410 RGI ++ EDGG GS Sbjct: 262 RGIIVKAEDGGFGS 275
>XKR6_RAT (Q5GH57) XK-related protein 6| Length = 638 Score = 28.9 bits (63), Expect = 5.5 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +3 Query: 9 IPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 128 IP PP +P+ APQ PG RG + A ++Q + D Sbjct: 517 IPLPPDVEPM--APQTPGYRGTQVTPTRAVTEQQEDLTAD 554
>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain (VL);| Vitellin light chain rare isoform; Vitellin heavy chain rare isoform; Vitellin heavy chain (VH)] Length = 1782 Score = 25.8 bits (55), Expect(2) = 6.4 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +3 Query: 243 FVVVHDDHR---RGVCGALRGGRLDDDVVHRLPGRADFKQEVGATRGINIQXED 395 FVV D+R RG+CG + G + DD + G D + A +N + D Sbjct: 1587 FVVFTQDYRNSTRGICGRMSGEQRDDYLTPE--GLVDKPELYAAAYSLNEENSD 1638 Score = 21.2 bits (43), Expect(2) = 6.4 Identities = 9/34 (26%), Positives = 15/34 (44%) Frame = +1 Query: 25 LEIRSEPRPSSPAGEVRAVCGRKQQASKALNLWW 126 LEI +P A +V+ K+ L ++W Sbjct: 1517 LEIEIQPASGDSAYQVKVTTNTKKITDDDLTMYW 1550
>PROA_DESPS (Q6AK09) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 418 Score = 28.5 bits (62), Expect = 7.2 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 228 ALVAVFVVVHDDHRRGVCGALRGGRLDDDVV-HRLPGRADFKQEVG 362 A VA V+ R GVC AL G + +D+V LPG A E+G Sbjct: 241 AKVAPIVINAKTQRPGVCNALEGILIHEDIVADVLPGLATELAELG 286
>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)| (Restrictedly overexpressed proliferation-associated protein) (Ropp 120) Length = 981 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = +3 Query: 3 SSIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAG 161 S+ P+PPP PL + R + E + +Q+ EP D ++ +G Sbjct: 895 SNTPTPPPSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEESEEGSG 947
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 221 PSIFPPRPNAISPT--STCTGPPRCTRP 144 P + PPRP +P +T T PPR TRP Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 221 PSIFPPRPNAISPT--STCTGPPRCTRP 144 P + PPRP +P +T T PPR TRP Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 28.5 bits (62), Expect = 7.2 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +3 Query: 9 IPSPPPRDPLGAAPQLPGRRGARG 80 IPSPPP P AP P R RG Sbjct: 462 IPSPPPSPPPSPAPLEPSSRVGRG 485
>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)| Length = 413 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +3 Query: 18 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEP 119 P PRD A PQ PGR A G+ AA+ + P Sbjct: 37 PCPRDDPQAEPQAPGRPTAPGLAAAAAADKLEPP 70
>Y1673_SYNY3 (P74261) Hypothetical tRNA/rRNA methyltransferase slr1673 (EC| 2.1.1.-) Length = 274 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -2 Query: 217 PSSRLGRMPSVPLAHVQDHPAARGLFISARSTKGSELCWLAASCHTPRAPR 65 P +RLG + L +QD P G + + G E WL A C P +P+ Sbjct: 117 PHARLGLV----LERLQD-PGNLGTILRTAAATGVEGIWLTADCVDPTSPK 162
>SYE_NEIMA (Q9JWT4) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 464 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 243 FVVVHDDHRRGVCGALRGGRLDDDVVHRLPGRADFKQEVGAT 368 F VV DD+ GV +RG DD V+ P + + + +GAT Sbjct: 188 FCVVVDDYDMGVTHVIRG----DDHVNNTPKQINILKAIGAT 225
>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 3707 Score = 28.1 bits (61), Expect = 9.4 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 126 DRADINRPRAAGWSCTCASGTDGIR 200 D +NRP G++C C G G+R Sbjct: 3213 DATCVNRPDGRGYTCRCHLGRSGVR 3237
>MINC_XANCP (Q8PBJ4) Probable septum site-determining protein minC| Length = 249 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +3 Query: 6 SIPSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDRADI 140 S P PPP P A P P R A G Q A + + + D+ Sbjct: 119 SPPPPPPPPPARAEPAAPVARPAPGRMQRNAVRSGQQLYAENCDL 163
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Frame = -1 Query: 221 PSIFPPRPNAISPTSTCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTARTSPA 60 P ++ P I + PP +P +SS H++ A+ AC LP+ TSP+ Sbjct: 1062 PHVYSP---VIQGNARMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPS 1118
>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -1 Query: 242 DGDEGRLPSIFPPRPNAISPTSTCTGPPRCTRP 144 DGD +PPRP I P T GP C P Sbjct: 480 DGDMRPYCWHYPPRPCGIVPARTVCGPVYCFTP 512
>EGLN2_HUMAN (Q96KS0) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-inducible| factor prolyl hydroxylase 1) (HIF-prolyl hydroxylase 1) (HIF-PH1) (HPH-3) (Prolyl hydroxylase domain-containing protein 1) (PHD1) (Estrogen-induced tag 6) Length = 407 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +3 Query: 39 GAAPQLPGRRGARGVWQEAASQQSSEPLVDRADINRPRAAGWSCTCASGT 188 GA P+ P R+ A A S P + + R G SC+C+SG+ Sbjct: 111 GARPEAPKRKWAEDGGD--APSPSKRPWARQENQEAEREGGMSCSCSSGS 158
>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)| Length = 1121 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +3 Query: 18 PPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVD 128 PPP + L P + RRG R VW A ++D Sbjct: 568 PPPPEMLDPLPPICSRRGGRLVWTNEALYDEVVTVID 604
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Frame = -1 Query: 221 PSIFPPRPNAISPTSTCTGPPRCTRPVYISS------IHQRFRALLACCFLPHTARTSPA 60 P ++ P I + PP +P +SS H++ A+ AC LP+ TSP+ Sbjct: 1036 PHVYSP---VIQGNARMMAPPAHAQPGLVSSSAAQFGAHEQTHAMYACPKLPYNKETSPS 1092
>CDN1C_HUMAN (P49918) Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent| kinase inhibitor p57) (p57KIP2) Length = 316 Score = 28.1 bits (61), Expect = 9.4 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Frame = +3 Query: 12 PSPPPRDPLGAAPQLPGRRGARGVWQEAASQQSSEPLVDR--ADINRPRAAGWSCTCASG 185 P+P P AAPQ +GA Q+ EPL D+ + I+ AAG + A+G Sbjct: 208 PAPAPAPAPDAAPQESAEQGAN------QGQRGQEPLADQLHSGISGRPAAGTAAASANG 261
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.1 bits (61), Expect = 9.4 Identities = 20/79 (25%), Positives = 31/79 (39%) Frame = -1 Query: 341 GSTGKTVDDVIIQAPXXXXXXXXXXXXXVHNDEDGDEGRLPSIFPPRPNAISPTSTCTGP 162 G +G+ AP V E GD+ RL S PRP+ ++PT Sbjct: 898 GGSGRATTAKSSGAPQDSDSSATCSADEVDEAEGGDKNRLLS---PRPSLLTPTGDPRAN 954 Query: 161 PRCTRPVYISSIHQRFRAL 105 +P+ + + QR A+ Sbjct: 955 ASPQKPLDLKQLKQRAAAI 973 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,054,780 Number of Sequences: 219361 Number of extensions: 1089324 Number of successful extensions: 5050 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 4411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5029 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
