ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 4e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 188 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247 |||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 38384272 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 38384216 Query: 248 cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggtgggcgcctgga 307 || | |||||||||||||||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 38384215 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 38384156 Query: 308 tgatgacgtcgtccaccgtcttcccg 333 |||||||||| |||||| |||||||| Sbjct: 38384155 tgatgacgtcatccaccatcttcccg 38384130
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 167 bits (84), Expect = 4e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 188 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247 |||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 145097 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 145041 Query: 248 cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggtgggcgcctgga 307 || | |||||||||||||||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 145040 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 144981 Query: 308 tgatgacgtcgtccaccgtcttcccg 333 |||||||||| |||||| |||||||| Sbjct: 144980 tgatgacgtcatccaccatcttcccg 144955
>dbj|AK119636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F03, full insert sequence Length = 2826 Score = 167 bits (84), Expect = 4e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Plus Query: 188 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247 |||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 137 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 193 Query: 248 cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggtgggcgcctgga 307 || | |||||||||||||||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 194 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 253 Query: 308 tgatgacgtcgtccaccgtcttcccg 333 |||||||||| |||||| |||||||| Sbjct: 254 tgatgacgtcatccaccatcttcccg 279
>dbj|AK100713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115H24, full insert sequence Length = 2988 Score = 167 bits (84), Expect = 4e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Plus Query: 188 tgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgt 247 |||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct: 303 tgatggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgt 359 Query: 248 cgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggtgggcgcctgga 307 || | |||||||||||||||||||| ||||| |||||||||||| |||| |||||||||| Sbjct: 360 cgctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctgga 419 Query: 308 tgatgacgtcgtccaccgtcttcccg 333 |||||||||| |||||| |||||||| Sbjct: 420 tgatgacgtcatccaccatcttcccg 445
>ref|XM_463541.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2421 Score = 163 bits (82), Expect = 6e-37 Identities = 129/144 (89%), Gaps = 3/144 (2%) Strand = Plus / Plus Query: 190 atggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttcgtcg 249 |||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct: 1 atggcatttggccgaggctcgaagatggacggcaggcgg---tcgtcgccgtcgtcgtcg 57 Query: 250 ttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggtgggcgcctggatg 309 | |||||||||||||||||||| ||||| |||||||||||| |||| |||||||||||| Sbjct: 58 ctctgcacgacgaccaccgtcgtcgtgttcgtggcgctctgcctggtcggcgcctggatg 117 Query: 310 atgacgtcgtccaccgtcttcccg 333 |||||||| |||||| |||||||| Sbjct: 118 atgacgtcatccaccatcttcccg 141
>gb|AY596586.1| Saccharum officinarum clone SCCCRZ2002H08, complete sequence Length = 2841 Score = 139 bits (70), Expect = 8e-30 Identities = 129/148 (87%), Gaps = 3/148 (2%) Strand = Plus / Plus Query: 186 actgatggcattcggccgaggcgggaagatggacggcaggcggccctcgtcgccgtcttc 245 |||||||||||| |||||||| ||||||||||||||| | ||||| |||||| |||| Sbjct: 212 actgatggcatttggccgaggtgggaagatggacggccgccggccgtcgtcgtcgtc--- 268 Query: 246 gtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgcgtggtgggcgcctg 305 |||||| |||||||| ||||| ||||| || ||||||||||||||| |||| ||||| || Sbjct: 269 gtcgttctgcacgaccaccacggtcgtcgtctttgtggcgctctgcctggtcggcgcgtg 328 Query: 306 gatgatgacgtcgtccaccgtcttcccg 333 ||||||||| |||||||| ||||||||| Sbjct: 329 gatgatgacctcgtccactgtcttcccg 356
>gb|AC134047.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052O08 map MAP_LOC, complete sequence Length = 154839 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 244 tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 291 |||||| ||||| ||||| | |||||||| ||||| |||||||||||| Sbjct: 143183 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 143230
>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15, complete sequence Length = 142289 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 244 tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 291 |||||| ||||| ||||| | |||||||| ||||| |||||||||||| Sbjct: 13036 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 13083
>gb|AC090018.12| Homo sapiens 3 BAC RP11-1D19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 205638 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 56 ccccggccggcgaggtgcgcgcgg 79 |||||||||||||||||||||||| Sbjct: 108108 ccccggccggcgaggtgcgcgcgg 108085
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 244 tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 291 |||||| ||||| ||||| | |||||||| ||||| |||||||||||| Sbjct: 4361673 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 4361720
>dbj|AK109545.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E05, full insert sequence Length = 3015 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 244 tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 291 |||||| ||||| ||||| | |||||||| ||||| |||||||||||| Sbjct: 238 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 285
>emb|AJ338620.1|HSA338620 Homo sapiens genomic sequence surrounding NotI site, clone NB1-803R Length = 460 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 56 ccccggccggcgaggtgcgcgcgg 79 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>emb|AJ340775.1|HSA340775 Homo sapiens genomic sequence surrounding NotI site, clone NL1-GA3RS Length = 667 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 56 ccccggccggcgaggtgcgcgcgg 79 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>emb|AJ341443.1|HSA341443 Homo sapiens genomic sequence surrounding NotI site, clone NL1-FL23RS Length = 557 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 56 ccccggccggcgaggtgcgcgcgg 79 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>emb|AJ326070.1|HSA326070 Homo sapiens genomic sequence surrounding NotI site, clone NR1-194R Length = 724 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 56 ccccggccggcgaggtgcgcgcgg 79 |||||||||||||||||||||||| Sbjct: 45 ccccggccggcgaggtgcgcgcgg 68
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.024 Identities = 42/48 (87%) Strand = Plus / Plus Query: 244 tcgtcgttgtgcacgacgaccaccgtcgtggtgtttgtggcgctctgc 291 |||||| ||||| ||||| | |||||||| ||||| |||||||||||| Sbjct: 4370367 tcgtcgctgtgctcgacggcgaccgtcgtcgtgttcgtggcgctctgc 4370414
>ref|NM_194513.1| Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0071K19.13), mRNA Length = 1707 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 59 cgtcgccgtcttcgtcgttgt 79
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 118443 cgtcgccgtcttcgtcgttgt 118423
>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence Length = 108051 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 cccagctccccggccggcgag 69 ||||||||||||||||||||| Sbjct: 7532 cccagctccccggccggcgag 7512
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 cggccctcgtcgccgtcttcgtcgt 250 |||||||||||| |||||||||||| Sbjct: 241542 cggccctcgtcggcgtcttcgtcgt 241518
>ref|XM_690503.1| PREDICTED: Danio rerio similar to sodium-calcium exchanger (LOC567212), mRNA Length = 1422 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 caccgtcgtggtgtttgtggcgctc 288 ||||| ||||||||||||||||||| Sbjct: 1005 caccgccgtggtgtttgtggcgctc 1029
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 353385 cgtcgccgtcttcgtcgttgt 353365
>emb|X65556.1|SLGLYUB S.lividans tRNA-GlyU beta gene Length = 2576 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 cggccctcgtcgccgtcttcgtcgt 250 |||||||||||| |||||||||||| Sbjct: 1813 cggccctcgtcggcgtcttcgtcgt 1837
>emb|AJ333186.1|HSA333186 Homo sapiens genomic sequence surrounding NotI site, clone NR1-TG13RS Length = 600 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 55 tccccggccggcgaggtgcgcgcgg 79 |||||||||||||||| |||||||| Sbjct: 45 tccccggccggcgaggggcgcgcgg 69
>dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full insert sequence Length = 2160 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
>dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full insert sequence Length = 1977 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 280 cgtcgccgtcttcgtcgttgt 300
>emb|BX890602.8| Zebrafish DNA sequence from clone DKEYP-109H9 in linkage group 18, complete sequence Length = 191296 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 caccgtcgtggtgtttgtggcgctc 288 ||||| ||||||||||||||||||| Sbjct: 48035 caccgccgtggtgtttgtggcgctc 48059
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 233 cgtcgccgtcttcgtcgttgt 253 ||||||||||||||||||||| Sbjct: 353382 cgtcgccgtcttcgtcgttgt 353362
>ref|XM_528529.1| PREDICTED: Pan troglodytes similar to doublesex and mab-3 related transcription factor 2 (LOC473159), mRNA Length = 2433 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ctcgtcgccgtcttcgtcgt 250 |||||||||||||||||||| Sbjct: 468 ctcgtcgccgtcttcgtcgt 449
>ref|XM_464814.1| Oryza sativa (japonica cultivar-group), mRNA Length = 609 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 230 cctcgtcgccgtcttcgtcgttgtgcac 257 |||||||| |||||||||||| |||||| Sbjct: 99 cctcgtcgtcgtcttcgtcgtcgtgcac 126
>ref|XM_598445.2| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6), transcript variant 1 (LOC520210), mRNA Length = 2797 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gaccaccgtcgtggtgtttgtggc 284 ||||||||| |||||||||||||| Sbjct: 1336 gaccaccgtggtggtgtttgtggc 1359
>ref|XM_877634.1| PREDICTED: Bos taurus similar to Chloride channel protein 6 (ClC-6), transcript variant 2 (LOC520210), mRNA Length = 1567 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gaccaccgtcgtggtgtttgtggc 284 ||||||||| |||||||||||||| Sbjct: 1336 gaccaccgtggtggtgtttgtggc 1359
>ref|XM_808184.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506367.174) partial mRNA Length = 408 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcgtcgttgtgcacgacgac 263 |||||||||||||||||||| Sbjct: 369 tcgtcgttgtgcacgacgac 350
>ref|XM_811489.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506629.90) partial mRNA Length = 408 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcgtcgttgtgcacgacgac 263 |||||||||||||||||||| Sbjct: 369 tcgtcgttgtgcacgacgac 350
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgtcgccgtcttcgtcg 249 |||||||||||||||||||| Sbjct: 2397334 cctcgtcgccgtcttcgtcg 2397353
>gb|AC135614.15| Pan troglodytes clone rp43-3m22, complete sequence Length = 118935 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 ggtgtgtggcaggaagcagcaagc 101 |||| ||||||||||||||||||| Sbjct: 48288 ggtgggtggcaggaagcagcaagc 48311
>gb|AC048352.18| Homo sapiens 12 BAC RP11-871F6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216792 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 agcagcaagccagcaaagct 111 |||||||||||||||||||| Sbjct: 16209 agcagcaagccagcaaagct 16228
>dbj|AB214954.1| Streptomyces griseus griE, griF genes for copper chaperon, ortho-aminophenol oxidase, complete cds Length = 1530 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ggccgcgtgcagcggggtgg 164 |||||||||||||||||||| Sbjct: 367 ggccgcgtgcagcggggtgg 348
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 275 tgtttgtggcgctctgcgtggtgggcgcctggatgatgacgtcg 318 |||| |||||||||||| | || ||||| ||||||||| ||||| Sbjct: 3966565 tgttcgtggcgctctgcctcgtcggcgcgtggatgatgtcgtcg 3966608
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ggcaggcggccctcgtcgcc 239 |||||||||||||||||||| Sbjct: 1787592 ggcaggcggccctcgtcgcc 1787573
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 230 cctcgtcgccgtcttcgtcgttgtgcac 257 |||||||| |||||||||||| |||||| Sbjct: 8362905 cctcgtcgtcgtcttcgtcgtcgtgcac 8362878
>gb|AC026305.20| Homo sapiens 3 BAC RP11-91A15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104150 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tgtacatgtgctagtgggac 187 |||||||||||||||||||| Sbjct: 37641 tgtacatgtgctagtgggac 37622
>ref|XM_221125.3| PREDICTED: Rattus norvegicus similar to tripartite motif-containing 65 (LOC303684), mRNA Length = 1384 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ggagccgcgccccagctccc 58 |||||||||||||||||||| Sbjct: 28 ggagccgcgccccagctccc 47
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccggcgaggtgcgcgcggtg 81 |||||||||||||||||||| Sbjct: 157990 ccggcgaggtgcgcgcggtg 157971
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ggcaggcggccctcgtcgcc 239 |||||||||||||||||||| Sbjct: 174164 ggcaggcggccctcgtcgcc 174145
>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1227_D07 Length = 118358 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ggcaggcggccctcgtcgcc 239 |||||||||||||||||||| Sbjct: 26254 ggcaggcggccctcgtcgcc 26235
>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0011N12 Length = 158586 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 230 cctcgtcgccgtcttcgtcgttgtgcac 257 |||||||| |||||||||||| |||||| Sbjct: 15755 cctcgtcgtcgtcttcgtcgtcgtgcac 15728
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 230 cctcgtcgccgtcttcgtcgttgtgcac 257 |||||||| |||||||||||| |||||| Sbjct: 139576 cctcgtcgtcgtcttcgtcgtcgtgcac 139549
>emb|AJ341642.1|HSA341642 Homo sapiens genomic sequence surrounding NotI site, clone NR1-CF19RS Length = 674 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 ccccggccggcgaggtgcgcgcgg 79 |||||| ||||||||||||||||| Sbjct: 45 ccccggacggcgaggtgcgcgcgg 68
>emb|AJ340862.1|HSA340862 Homo sapiens genomic sequence surrounding NotI site, clone NR1-ED2RS Length = 586 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ggccggcgaggtgcgcgcgg 79 |||||||||||||||||||| Sbjct: 49 ggccggcgaggtgcgcgcgg 68
>gb|AF175313.1|AF175313 Oncorhynchus mykiss cardiac sodium-calcium exchanger (NCX) mRNA, complete cds Length = 3302 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 accgtcgtggtgtttgtggcgctc 288 |||| ||||||||||||||||||| Sbjct: 2562 accgccgtggtgtttgtggcgctc 2585
>dbj|AK062216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A10, full insert sequence Length = 1055 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgtcgccgtcttcgtcg 249 |||||||||||||||||||| Sbjct: 64 cctcgtcgccgtcttcgtcg 83
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cggccggcgaggtgcgcgcg 78 |||||||||||||||||||| Sbjct: 9240 cggccggcgaggtgcgcgcg 9259
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 cggccggcgaggtgcgcgcg 78 |||||||||||||||||||| Sbjct: 104187 cggccggcgaggtgcgcgcg 104206
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 275 tgtttgtggcgctctgcgtggtgggcgcctggatgatgacgtcg 318 |||| |||||||||||| | || ||||| ||||||||| ||||| Sbjct: 3966539 tgttcgtggcgctctgcctcgtcggcgcgtggatgatgtcgtcg 3966582
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 275 tgtttgtggcgctctgcgtggtgggcgcctggatgatgacgtcg 318 |||| |||||||||||| | || ||||| ||||||||| ||||| Sbjct: 2973 tgttcgtggcgctctgcctcgtcggcgcgtggatgatgtcgtcg 3016
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 40.1 bits (20), Expect = 5.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 275 tgtttgtggcgctctgcgtggtgggcgcctggatgatgacgtcg 318 |||| |||||||||||| | || ||||| ||||||||| ||||| Sbjct: 128541 tgttcgtggcgctctgcctcgtcggcgcgtggatgatgtcgtcg 128584
>gb|M30609.1|MXARTMSD M.xanthus reverse transcriptase (Mx65-RT) gene, multicopy single-stranded DNA (msDNA) and RNA (msdRNA) genes, complete cds Length = 1640 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ggccggcgaggtgcgcgcggtgtg 83 ||||| |||||||||||||||||| Sbjct: 1485 ggccgtcgaggtgcgcgcggtgtg 1462
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 ggagccgcgccccagctccc 58 |||||||||||||||||||| Sbjct: 147553 ggagccgcgccccagctccc 147534
>dbj|AB033571.1| Eptatretus burgeri hgPTPR2Ab mRNA, partial cds Length = 1878 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 gtgtttgtggcgctctgcgtggtg 297 ||||||||||||||| |||||||| Sbjct: 1225 gtgtttgtggcgctcagcgtggtg 1248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,729,694 Number of Sequences: 3902068 Number of extensions: 2729694 Number of successful extensions: 79950 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79420 Number of HSP's gapped (non-prelim): 524 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
