>SDE3_ARATH (Q8GYD9) Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing|
           defective protein 3)
          Length = 1002

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +2

Query: 254 GHHSDDEYSVAGDKPEVEFMDFQNDNTLQDYQS-DDGPVVVTAPFPFVNGKPKSVLVGET 430
           G+ SDDEYSV  DK E+ F+D+QND +   Y   D+GPVVV+ PFPF   KP+SV VGET
Sbjct: 5   GYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFPFKKEKPQSVTVGET 64

Query: 431 STDT 442
           S D+
Sbjct: 65  SFDS 68

>MPC2_RALEU (P17296) Metapyrocatechase 2 (EC 1.13.11.2) (MPC) (CatO2ase)|
           (Catechol 2,3-dioxygenase II)
          Length = 320

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 150 PDGGLIQSNLSAAVPPHLRSPARLRASPRGQ 242
           PDG L+Q  +     P  +SPARL  +P GQ
Sbjct: 121 PDGNLVQVKIGPKTSPSSKSPARLEGAPGGQ 151

>SENP6_HUMAN (Q9GZR1) Sentrin-specific protease 6 (EC 3.4.22.-)|
            (Sentrin/SUMO-specific protease SENP6) (SUMO-1-specific
            protease 1)
          Length = 1112

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
 Frame = +2

Query: 257  HHSD----------DEYSVAGDKPEVEFMDFQNDNTLQDYQSDDG 361
            HH+D          DE   AG   E E +DF  D   QD  SDDG
Sbjct: 903  HHTDGLSKIRLNYSDESPEAGKMLEDELVDFSEDQDNQDDSSDDG 947

>VGFR2_HUMAN (P35968) Vascular endothelial growth factor receptor 2 precursor (EC|
            2.7.10.1) (VEGFR-2) (Kinase insert domain receptor)
            (Protein-tyrosine kinase receptor Flk-1) (CD309 antigen)
          Length = 1356

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 239  SGFKMGHHSDDEYSVAGDKPEVEFMDF-----QNDNTLQDYQSDDGPVVVTAP 382
            SG++ G+HSDD  +      E E +       Q  +T Q  Q D G  + + P
Sbjct: 1303 SGYQSGYHSDDTDTTVYSSEEAELLKLIEIGVQTGSTAQILQPDSGTTLSSPP 1355

>FAR2_CAEEL (P34383) Fatty-acid and retinol-binding protein 2 precursor|
          Length = 182

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 281 VAGDKPEVEFMDFQNDNTLQDYQ--SDDGPVVVTAPFPFVNG 400
           +AGDKP ++ +       + +Y+  SDD    +TA FP + G
Sbjct: 125 LAGDKPTLDSLKELAKGYIAEYKALSDDAKATITAEFPILTG 166

>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = +2

Query: 230 ASRSGFKMGHHSDDEYSVAGDKPEVEF-------MDFQNDNTLQDYQSDD-GPVVVTAPF 385
           + R  F  G+  DD+Y   GD+ E  +          ++D +  DY+ DD GP       
Sbjct: 276 SGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGP----PQR 331

Query: 386 PFVNGKPKS 412
           P +N KP+S
Sbjct: 332 PRLNLKPRS 340

>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = +2

Query: 230 ASRSGFKMGHHSDDEYSVAGDKPEVEF-------MDFQNDNTLQDYQSDD-GPVVVTAPF 385
           + R  F  G+  DD+Y   GD+ E  +          ++D +  DY+ DD GP       
Sbjct: 276 SGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYRRDDRGP----PQR 331

Query: 386 PFVNGKPKS 412
           P +N KP+S
Sbjct: 332 PKLNLKPRS 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,764,117
Number of Sequences: 219361
Number of extensions: 829394
Number of successful extensions: 2246
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2245
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)