>UBP15_YEAST (P50101) Ubiquitin carboxyl-terminal hydrolase 15 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 15)
           (Ubiquitin-specific-processing protease 15)
           (Deubiquitinating enzyme 15)
          Length = 1230

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 328 FTWTIENFTRLSGKKHYSDMFVVGGFKWRVLI 423
           FTW I ++  L+  K+ S  F +G F+W +L+
Sbjct: 42  FTWNIPDWNELTNPKYNSPRFRIGDFEWDILL 73

>UBP21_SCHPO (Q9UTT1) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 21) (Ubiquitin-specific
           processing protease 21) (Deubiquitinating enzyme 21)
          Length = 1129

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAP--EDPQTSRFTWTIENF 351
           L   + +E  + +  EL  + S +P+      E  N+     P  E+   + ++W ++NF
Sbjct: 3   LSNVDAEEVNMDSSMELEES-SQEPLRADNYEEIYNSLVHHEPDLEEAAHASYSWVVKNF 61

Query: 352 TRLSGKKHYSDMFVVGGFKWRVLI 423
           + L  K  YS +F  G   WR+++
Sbjct: 62  STLEDKT-YSPLFKAGHTTWRIVL 84

>RMT2_NEUCR (Q7SCW9) Arginine N-methyltransferase 2 (EC 2.1.1.-)|
          Length = 429

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAP 306
           L+  +ED+E +   +E  A D  +  E+V   E   TAE + P
Sbjct: 138 LDSDDEDDEEMAEGEEAQAEDGEEAPELVAAEEATQTAEEETP 180

>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)|
          Length = 1355

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 130 TAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPE 309
           T  S+  S    T + + QQ++  ++++ HQ+ +AA + +P          N +ES   E
Sbjct: 148 TTTSNSNSNNTQTTNSISQQQQQHQIVLQHQQPAAAATPKP---CADLSAKNDSESGIDE 204

Query: 310 DPQTS 324
           D   S
Sbjct: 205 DSPNS 209

>VIE1_MCMVS (P11210) Immediate-early protein 1 (IE1) (Immediate-early|
           phosphoprotein PP89)
          Length = 595

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 175 PLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPED 312
           PLE++EE E+  V  +  +  +    +  V Q EPA  A  +A ED
Sbjct: 420 PLEREEEQEDEQVEEEPPADEEEGGAVGGVTQEEPAGEATEEAEED 465

>CALX_CAEEL (P34652) Calnexin homolog precursor|
          Length = 619

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 151 SMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTS 324
           S +   P P +++E  E+      + SAA+      VV + EP    E  A + P+ +
Sbjct: 550 SGSQSNPEPQDEEENAEQQSANSSQSSAAEEEDDEHVVPENEPVKPTEEFAKKSPKNT 607

>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +1

Query: 109  ISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANT 288
            +  PS  TAASD GS++ M   PLE +  D ++     E   A SA P E   +   +++
Sbjct: 2373 VQQPSGETAASDAGSLSSM--PPLEGEPGDPDL-----EFEPARSAPPSEGECEVIDSDS 2425

Query: 289  AESQAPEDPQTS------RFTWT 339
                   D + S       ++WT
Sbjct: 2426 KSWSTVSDQEDSVICCSMSYSWT 2448

>YH57_SCHPO (O94312) PWWP domain protein C215.07c|
          Length = 568

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 103 SQISNPSSATAAS-DDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEP 279
           + I+N +    AS D+GS +  TPSP  +Q  D++    +++   ADS  P +   + E 
Sbjct: 455 ASIANENETEIASLDEGSESKPTPSPPAEQLTDQKQNEDNEDKVKADSNGPTQ--NENET 512

Query: 280 ANTAESQAPEDPQTSRFTWTIENFTRLSGKKHYSD 384
           A+ ++    E+  +       +N   ++GK    D
Sbjct: 513 ADASKDMISEEKSSK----DADNSLEVAGKDFAED 543

>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)|
          Length = 1669

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 178  LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFTWTIENFTR 357
            L QQ++ ++  VA     A   A+P+ ++  T PAN + + A     T+       N   
Sbjct: 1109 LLQQQQQQQQNVALPTTQAKFIAKPLNIISMTRPANASPTTAATTANTASIPSAYANVVA 1168

Query: 358  LSG 366
            ++G
Sbjct: 1169 VTG 1171

>S12A7_HUMAN (Q9Y666) Solute carrier family 12 member 7 (Electroneutral|
            potassium-chloride cotransporter 4) (K-Cl cotransporter
            4)
          Length = 1083

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = +1

Query: 160  MMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFTWT 339
            M+    L + E++ E  + H   +A+ +A              A +QAP  P   + TWT
Sbjct: 935  MLKQMQLSKNEQEREAQLIHDRNTASHTAA------------AARTQAPPTPDKVQMTWT 982

Query: 340  IENFTRLSGKKHYSDMFVVGGFK 408
             E   +L  +K+ S    + GFK
Sbjct: 983  RE---KLIAEKYRSRDTSLSGFK 1002

>GLU2B_HUMAN (P14314) Glucosidase 2 beta subunit precursor (Glucosidase II beta|
           subunit) (Protein kinase C substrate, 60.1 kDa protein,
           heavy chain) (PKCSH) (80K-H protein)
          Length = 527

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 181 EQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAE--SQAPEDPQTSRF 330
           E++EE+EE   A +E    DS +    +   +PA+ AE     P D QT  F
Sbjct: 314 EEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPASPAEEDKMPPYDEQTQAF 365

>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral|
            potassium-chloride cotransporter 4) (K-Cl cotransporter
            4)
          Length = 1083

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = +1

Query: 193  EDEEMLVAHQELSAADSAQPMEVVVQTEPAN----TAESQAPEDPQTSRFTWTIENFTRL 360
            E    ++   +LS  +  +  +++     A+    TA +QAP  P   + TWT E   +L
Sbjct: 930  EQRSQMLKQMQLSKNEREREAQLIHDRNTASHTTATARTQAPPTPDKVQMTWTKE---KL 986

Query: 361  SGKKHYSDMFVVGGFK 408
              +KH +      GFK
Sbjct: 987  IAEKHRNKDTGPSGFK 1002

>PPNK_XANCP (Q8PAD9) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 258

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFT 333
           + Q  +DE+ L+A  + +     +P+E++VQTE   +A S A  +    R T
Sbjct: 74  MNQYRDDEDDLLARLQRAEPAHLRPLEMLVQTESGTSAGSLAYNEVSLLRQT 125

>PPNK_XANC8 (Q4UT86) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 258

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFT 333
           + Q  +DE+ L+A  + +     +P+E++VQTE   +A S A  +    R T
Sbjct: 74  MNQYRDDEDDLLARLQRAEPAHLRPLEMLVQTESGTSAGSLAYNEVSLLRQT 125

>EP84_HCMVA (P17151) Early phosphoprotein p84|
          Length = 684

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +1

Query: 106 QISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPAN 285
           Q S  ++  AA+    M  M  +P E  E         Q     DS  P+       P N
Sbjct: 386 QESEAAATAAAAGLMMMRRMRRAPAEAAEAPP------QSEEENDSTTPVSNC--RVPPN 437

Query: 286 TAESQAPEDPQTSRFTWTIENFTRL 360
           + ES AP+ P++ RF   I++ T++
Sbjct: 438 SQESAAPQPPRSPRFDDIIQSLTKM 462

>TILS_BACFR (Q64WF9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 435

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
 Frame = +1

Query: 193 EDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRF-------TWTIENF 351
           +D ++L+  ++ + A+ +QP   +V  E   T+E   P+D  T+ F       TW I  +
Sbjct: 298 KDRDLLLIEED-TTAEESQPPFRLVMEEYDYTSEFIIPKDKNTACFDADKINKTWEIRKW 356

Query: 352 T--------RLSGKKHYSD 384
                     ++GKKH SD
Sbjct: 357 KPGDVFIPFGMTGKKHVSD 375

>TRHY_SHEEP (P22793) Trichohyalin|
          Length = 1549

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFTWTIENFTR 357
           LEQ+  ++E+    QE       Q  E   Q E +   ES+      TSR  W +E+   
Sbjct: 253 LEQERREQELRRKEQERREQQLRQEQEEATQEEISERGESR------TSRCQWQLESEAD 306

Query: 358 LSGKKHYS 381
              +K YS
Sbjct: 307 ARQRKVYS 314

>MLH1_MOUSE (Q9JK91) DNA mismatch repair protein Mlh1 (MutL protein homolog 1)|
          Length = 760

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 103 SQISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPA 282
           SQ  +P+    A  +GS       P     EDEEML       AA  ++ +E     E +
Sbjct: 406 SQPQDPAPVRGARTEGS-------PERATREDEEMLALPAPAEAAAESENLERESLMETS 458

Query: 283 NTAESQAP-EDPQTSR 327
           + A+  AP   P +SR
Sbjct: 459 DAAQKAAPTSSPGSSR 474

>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 232  AADSAQPMEVVVQTEPANTAESQAPEDPQTSR 327
            AA+S+   EV  + +P++ +E QAP  PQ+ R
Sbjct: 2030 AAESSFSQEVSREQQPSSASERQAPRAPQSPR 2061

>YB4H_SCHPO (O14362) KNR4/SMI1 homolog|
          Length = 504

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
 Frame = +1

Query: 118 PSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPAN---- 285
           PS+ T   DDG        PL    +DEE L+  +EL A      +      +PAN    
Sbjct: 381 PSTGTTVLDDGLDNNYEDIPLYGPSKDEE-LIKKEELEADTDLGLINTSEINQPANLPDE 439

Query: 286 -TAESQAPEDPQT-SRFTWTIEN 348
            TAE+  P    T    T T +N
Sbjct: 440 PTAETSNPVSATTVEAVTTTADN 462

>CG034_HUMAN (Q96L11) Protein C7orf34 precursor (MSSP-binding protein CTM-1)|
          Length = 122

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +1

Query: 118 PSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAES 297
           P + +    DGS T  TPS  + QE+ EE  VA    S  +  Q +++  Q E  ++  +
Sbjct: 25  PLNGSPGPKDGSQTEKTPSADQNQEQFEEHFVAS---SVGEMWQVVDMAQQEEDQSSKTA 81

Query: 298 QAPEDPQTSRFTWTIENFTRLSG 366
              +      F +++ +    SG
Sbjct: 82  AVHKHSFHLSFCFSLASVMVFSG 104

>PBPA_BACSU (P39793) Penicillin-binding protein 1A/1B (PBP1) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 914

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +1

Query: 130 TAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPE 309
           TA SDDG  T  T   + + E+DE+     Q        +  +   QT+ +   + Q  +
Sbjct: 773 TAVSDDGKSTASTSYEVPKAEDDEDKKDQQQTDDEKQDDEKTQDDTQTDDSQKDDGQTDQ 832

Query: 310 D 312
           D
Sbjct: 833 D 833

>S12A5_HUMAN (Q9H2X9) Solute carrier family 12 member 5 (Electroneutral|
            potassium-chloride cotransporter 2) (Erythroid K-Cl
            cotransporter 2) (Neuronal K-Cl cotransporter) (hKCC2)
          Length = 1116

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +1

Query: 166  TPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFTWT 339
            T    E++ E+E  L+  Q   +  S+ P        P    E +   DP+    TWT
Sbjct: 959  TAGDSEEKPEEEVQLIHDQSAPSCPSSSP-------SPGEEPEGEGETDPEKVHLTWT 1009

>SYH_STAS1 (Q49Y69) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 420

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFTWTIENFTR 357
           ++ + E  E LV H E    D     +  + T P    + +  +D +  +    I  F  
Sbjct: 169 IDSRHEYNEALVKHFEPVIGDFCSDCQSRLHTNPMRILDCKIDKDKEAVKTAPRITEFLN 228

Query: 358 LSGKKHYSDM 387
            + K++Y+D+
Sbjct: 229 ETSKQYYADV 238

>ABP1_SACEX (P38479) Actin-binding protein|
          Length = 617

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 169 PSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPED 312
           P P+E+ EE+EE     +E + A S        + EP    E +  E+
Sbjct: 482 PEPVEEGEEEEEEEEEEEEEAPAPSLPSRNAAPEPEPEQPQEEEEEEE 529

>APBA2_RAT (O35431) Amyloid beta A4 precursor protein-binding family A member|
           2 (Neuron-specific X11L protein) (Neuronal
           Munc18-1-interacting protein 2) (Mint-2) (Adapter
           protein X11beta)
          Length = 750

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
 Frame = +1

Query: 178 LEQQEEDEEMLVAHQELS-------AADSAQPMEVVVQTEPANTAESQAPED 312
           LE+QEED + +VA  ++S       +A  A P E + + +P ++ E+ +P D
Sbjct: 220 LEEQEEDIDQIVAEIKMSLSMTSITSASEASP-EHMPELDPGDSTEACSPSD 270

>S12A5_RAT (Q63633) Solute carrier family 12 member 5 (Electroneutral|
            potassium-chloride cotransporter 2) (K-Cl cotransporter
            2) (Neuronal K-Cl cotransporter) (Furosemide-sensitive
            K-Cl cotransporter) (rKCC2)
          Length = 1116

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +1

Query: 181  EQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTSRFTWT 339
            E++ E+E  L+  Q   +  S+ P        P    E +   DP+    TWT
Sbjct: 964  EEKPEEEVQLIHDQSAPSCPSSSP-------SPGEEPEGEGETDPEKVHLTWT 1009

>SOX5_MOUSE (P35710) Transcription factor SOX-5|
          Length = 763

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/79 (22%), Positives = 30/79 (37%)
 Frame = +1

Query: 145 DGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANTAESQAPEDPQTS 324
           DG + M+T     ++EE E +   H  L  +   +P     Q     T E+  P  P   
Sbjct: 27  DGEVAMVTSRQKVEEEESERLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGPRTPTVQ 86

Query: 325 RFTWTIENFTRLSGKKHYS 381
             T  ++    +S    Y+
Sbjct: 87  HNTMEVDGNKVMSSLSPYN 105

>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = +1

Query: 109  ISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPMEVVVQTEPANT 288
            +  PS  TAAS+ GS++ M   PLE +  D ++     E     SA P E   +   +++
Sbjct: 2373 VQQPSDETAASEAGSLSSM--PPLEGEPGDPDL-----EFEPVGSAPPSEGECEVIDSDS 2425

Query: 289  AESQAPEDPQTS------RFTWT 339
                   D + S       ++WT
Sbjct: 2426 KSWSTVSDQEDSVICCSMSYSWT 2448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.121    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,896,336
Number of Sequences: 219361
Number of extensions: 557056
Number of successful extensions: 1993
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1983
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)