Clone Information

BLAST Search Result

Clone Name	bastl40f07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ...	31	0.66
2	ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (1...	31	0.66
3	ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1...	31	0.66
4	ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1...	31	0.66
5	CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 ...	31	0.86
6	CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 ...	31	0.86
7	GRAP1_RAT (Q9JHZ4) GRIP1-associated protein 1 (GRASP-1)	31	0.86
8	IF2_XANOR (Q5GXU9) Translation initiation factor IF-2	30	1.1
9	PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)	30	1.1
10	RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X ...	30	1.5
11	CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)	30	1.5
12	TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit ...	30	1.9
13	TAF6_MOUSE (Q62311) Transcription initiation factor TFIID subuni...	30	1.9
14	EGLN1_MOUSE (Q91YE3) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-...	30	1.9
15	CL46_BOVIN (Q8MHZ9) Collectin-46 precursor (CL-46) (46 kDa colle...	30	1.9
16	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	30	1.9
17	COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor	30	1.9
18	PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7...	30	1.9
19	ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (...	29	2.5
20	C1QL3_MOUSE (Q9ESN4) Complement C1q-like protein 3 precursor (Gl...	29	3.3
21	ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)	29	3.3
22	BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/ly...	29	3.3
23	BC11B_HUMAN (Q9C0K0) B-cell lymphoma/leukemia 11B (B-cell CLL/ly...	29	3.3
24	RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)	29	3.3
25	OXAA_STRCO (O54569) Membrane protein oxaA	29	3.3
26	CREG2_HUMAN (Q8IUH2) CREG2 protein precursor	28	4.3
27	COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragm...	28	5.6
28	RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (N...	28	5.6
29	ACHE_RAT (P09660) Acetylcholine receptor protein, epsilon subuni...	28	5.6
30	MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A	28	5.6
31	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	28	5.6
32	PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate pho...	28	5.6
33	GRAP1_MOUSE (Q8VD04) GRIP1-associated protein 1 (GRASP-1) (HCMV-...	28	5.6
34	BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa...	28	5.6
35	ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2	28	5.6
36	XKR6_HUMAN (Q5GH73) XK-related protein 6	28	7.3
37	OXAA_STRAW (P59811) Membrane protein oxaA	28	7.3
38	V_TPMV (Q9QM81) Nonstructural protein V	28	7.3
39	ATG12_MAGGR (Q51P78) Autophagy-related protein 12 (Autophagy-rel...	28	7.3
40	YGBT_ECOLI (Q46896) Hypothetical protein ygbT	28	7.3
41	K1543_MOUSE (Q80VC9) Protein KIAA1543	28	7.3
42	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	28	7.3
43	PHOSP_TPMV (Q9WS39) Phosphoprotein (Protein P)	28	7.3
44	RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)	27	9.5
45	SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D p...	27	9.5
46	RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)	27	9.5
47	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	27	9.5
48	IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)	27	9.5
49	DUS8_HUMAN (Q13202) Dual specificity protein phosphatase 8 (EC 3...	27	9.5
50	VASP_BOVIN (Q2TA49) Vasodilator-stimulated phosphoprotein (VASP)	27	9.5
51	SPDEF_HUMAN (O95238) SAM pointed domain-containing Ets transcrip...	27	9.5
52	HD_HUMAN (P42858) Huntingtin (Huntington disease protein) (HD pr...	27	9.5
53	HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) ...	27	9.5
54	HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog...	27	9.5
55	CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GA...	27	9.5
56	ATS8_MOUSE (P57110) ADAMTS-8 precursor (EC 3.4.24.-) (A disinteg...	27	9.5
57	WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting ...	27	9.5
58	CAP1_HUMAN (Q01518) Adenylyl cyclase-associated protein 1 (CAP 1)	27	9.5

>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 21/44 (47%), Positives = 23/44 (52%)
 Frame = -1

Query: 353 DGDGDWSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPS 222
           DG GD S R     DSS+  P   G  PPPS PG   P S +PS
Sbjct: 71  DGMGD-SGRDSRSPDSSSPNPLPQG-VPPPSPPGPPLPPSTAPS 112

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>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 323 PERQDSSARR-PGAAGETPPPSDPGDANPISKSPSP 219
           PE +   A+R P AAG   PP+    A P S +PSP
Sbjct: 74  PEPRGGKAKRSPSAAGSGGPPTPAAAAQPASPAPSP 109

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>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 323 PERQDSSARR-PGAAGETPPPSDPGDANPISKSPSP 219
           PE +   A+R P AAG   PP+    A P S +PSP
Sbjct: 74  PEPRGGKAKRSPSAAGSGGPPTPAAAAQPASPAPSP 109

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>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa|
           immediate-early protein)
          Length = 1487

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 323 PERQDSSARR-PGAAGETPPPSDPGDANPISKSPSP 219
           PE +   A+R P AAG   PP+    A P S +PSP
Sbjct: 74  PEPRGGKAKRSPSAAGSGGPPTPAAAAQPASPAPSP 109

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>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen
            218 kDa protein) (Mi2-beta)
          Length = 1912

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -1

Query: 347  DGDWSRRFPE----RQDSSARRPGAAG-ETPPPSDPGDANPISKSPSPLSE 210
            +G WS   PE     ++    +PG+   +TP PS PGD  P + +P P +E
Sbjct: 1513 NGRWS--MPELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAE 1561

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>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)|
          Length = 1915

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -1

Query: 347  DGDWSRRFPE----RQDSSARRPGAAG-ETPPPSDPGDANPISKSPSPLSE 210
            +G WS   PE     ++    +PG+   +TP PS PGD  P + +P P +E
Sbjct: 1506 NGRWS--MPELAEVEENKKMSQPGSPSPKTPTPSTPGDTQPNTPAPVPPAE 1554

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>GRAP1_RAT (Q9JHZ4) GRIP1-associated protein 1 (GRASP-1)|
          Length = 837

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 18/37 (48%), Positives = 19/37 (51%)
 Frame = -1

Query: 320 ERQDSSARRPGAAGETPPPSDPGDANPISKSPSPLSE 210
           ER    A RP A  E      PGD  PIS SP PL+E
Sbjct: 152 ERYGKEAVRPSAVSEGQG-DPPGDVLPISLSPMPLAE 187

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>IF2_XANOR (Q5GXU9) Translation initiation factor IF-2|
          Length = 906

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 323 PERQDSSARRPGAAGETPPPSDPGDANPISKSPSP 219
           P     +AR P +    P PS PG A+P S+  +P
Sbjct: 197 PSAAAPAARAPSSPSSAPRPSRPGGASPASRPSTP 231

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>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)|
          Length = 5183

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 323 PERQDSSARRPGAAGETPPPSD-PGDANPISKSPSPLSES 207
           P++   +   P   G T PPS  PG A P ++ PSP   S
Sbjct: 457 PQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPS 496

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>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = -1

Query: 353 DGDGDWSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPS 222
           DG GD S R     DSS+  P + G  PPPS PG   P S +P+
Sbjct: 71  DGMGD-SGRDSRSPDSSSPNPLSQG-APPPSPPGLPLPPSSAPT 112

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>CO4A3_BOVIN (Q28084) Collagen alpha-3(IV) chain (Fragment)|
          Length = 471

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 305 SARRPGAAGETPPPSDPGDANPISKSPSP 219
           SA  PG  GE  PP  PGD  P      P
Sbjct: 165 SAGEPGMQGEPGPPGPPGDPGPCGPKGKP 193

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>TAF6_RAT (Q63801) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80)
          Length = 678

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 293 PGAAGETPPPSDPGDANPISKSPSPLSES 207
           P   G+  PPS P    P S SPSPL  S
Sbjct: 613 PTGEGKGGPPSHPSPVPPSSSSPSPLGGS 641

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>TAF6_MOUSE (Q62311) Transcription initiation factor TFIID subunit 6|
           (Transcription initiation factor TFIID 70 kDa subunit)
           (TAF(II)70) (TAFII-70) (TAFII-80) (TAFII80) (p80)
          Length = 678

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 293 PGAAGETPPPSDPGDANPISKSPSPLSES 207
           P   G+  PPS P    P S SPSPL  S
Sbjct: 613 PTGEGKGGPPSHPSPVPPSSSSPSPLGGS 641

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>EGLN1_MOUSE (Q91YE3) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-inducible|
           factor prolyl hydroxylase 2) (HIF-prolyl hydroxylase 2)
           (HIF-PH2) (HPH-2) (SM-20)
          Length = 400

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 350 GDGDWSRRFPERQDSSARRPGAAGETPPPSDPGDAN-PISKSPSP 219
           GD   + R P  +D++  R G     P P++PG  + P+S+SP P
Sbjct: 95  GDSAAASRVPGPEDAAQARSG-----PGPAEPGSEDPPLSRSPGP 134

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>CL46_BOVIN (Q8MHZ9) Collectin-46 precursor (CL-46) (46 kDa collectin)|
          Length = 371

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 323 PERQDSSARRPGAAGETPPPSDPGDANPISK 231
           P+  + SA  PG  G+T PP  PG   P  +
Sbjct: 86  PKGDNGSAGEPGPKGDTGPPGPPGMPGPAGR 116

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 317 RQDSSARRPGAAGETPPPSDPGDANPISKSPSP 219
           R+  S   PG   E PPPS  G A      PSP
Sbjct: 550 REQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSP 582

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>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 293 PGAAGETPPPSDPGDANPISKSPSP 219
           PG  G T PP DPGD  P  +   P
Sbjct: 456 PGLQGPTGPPGDPGDRGPPGRPGLP 480

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>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)|
          Length = 543

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 353 DGDGDWSRRFPERQDSSA-RRPGAAGETPPPSDPGDANPISKSP 225
           D + D  RR P+RQ S   ++P  A + PPP  PG   P  + P
Sbjct: 395 DPNQDPLRRRPQRQVSRPPQQPRQAPQGPPPQQPGYGYPQQQQP 438

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>ARHGB_HUMAN (O15085) Rho guanine nucleotide exchange factor 11 (PDZ-RhoGEF)|
          Length = 1522

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 338  WSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPSP 219
            W     E   ++ R PGAA     P  PG   P  + P+P
Sbjct: 1070 WMELLEEAVRNATRHPGAAPMPVHPPPPGPREPAQQGPTP 1109

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>C1QL3_MOUSE (Q9ESN4) Complement C1q-like protein 3 precursor (Gliacolin)|
          Length = 255

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 326 FPERQDSSARRPGAAGETPPPSDPGDANPI 237
           F +     A RPG AG   PP +PG   P+
Sbjct: 58  FIQGPKGEAGRPGKAGPRGPPGEPGPPGPV 87

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>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)|
          Length = 1687

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 293 PGAAGETPPPS-DPGDANPISKSPSPL 216
           PGA GETP P   PG+  P  ++ +PL
Sbjct: 86  PGAPGETPAPKLPPGEREPSQEAGTPL 112

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>BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)|
           (Radiation-induced tumor suppressor gene 1 protein)
           (mRit1) (COUP-TF-interacting protein 2)
          Length = 884

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 341 DWSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPSPLSES 207
           D+SRR  E   +S+        TPPP  PG  NP+ +  +P   S
Sbjct: 362 DFSRRLRELAGNSS--------TPPPVSPGRGNPMHRLLNPFQPS 398

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>BC11B_HUMAN (Q9C0K0) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)|
           (Radiation-induced tumor suppressor gene 1 protein)
           (hRit1) (COUP-TF-interacting protein 2)
          Length = 894

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 341 DWSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPSPLSES 207
           D+SRR  E   +S+        TPPP  PG  NP+ +  +P   S
Sbjct: 362 DFSRRLRELAGNSS--------TPPPVSPGRGNPMHRLLNPFQPS 398

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>RGS12_HUMAN (O14924) Regulator of G-protein signaling 12 (RGS12)|
          Length = 1447

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 320  ERQDSSARRPGAAGETPPPSDPGDANPISKSPS 222
            E  DS +  PG+A    PP  PG   P  KSPS
Sbjct: 1266 ESSDSPSTSPGSASS--PPGPPGTTPPGQKSPS 1296

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>OXAA_STRCO (O54569) Membrane protein oxaA|
          Length = 431

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = -1

Query: 332 RRFPERQDSSARRPGAAGETPPPS------DPGDANPISK 231
           R+ P+RQ  S R+   AGET P +      +P DA P  K
Sbjct: 351 RQQPKRQSKSQRQAKPAGETEPKTSLTKSDEPQDAEPAGK 390

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>CREG2_HUMAN (Q8IUH2) CREG2 protein precursor|
          Length = 290

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -1

Query: 353 DGDGDWSRRFP---ERQDSSAR-RPGAAGETPPPSDPG 252
           D    W + FP    ++D+  R R GAA   PPP+ PG
Sbjct: 65  DSGSIWQQSFPASAHKEDAHLRPRAGAARARPPPAPPG 102

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>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 911

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 293 PGAAGETPPPSDPGDANPISKSPSP 219
           PG  G T PP DPG+  P  +   P
Sbjct: 223 PGLQGPTGPPGDPGERGPPGRPGLP 247

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>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)|
          Length = 1162

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -1

Query: 323 PERQDSSARRPGAAGETPPPSD-------PGDANPISKSPSPLSES 207
           PERQ S  R P A+  + PP+        P D  P ++ P+P   S
Sbjct: 100 PERQPSWERSPAASAPSLPPAAAVLPSKLPEDDEPPARPPAPAGAS 145

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>ACHE_RAT (P09660) Acetylcholine receptor protein, epsilon subunit precursor|
          Length = 494

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 293 PGAAGETPPPSDPGDANPISKSPS 222
           P   G +PPP DPG A+P  ++ S
Sbjct: 351 PRLLGLSPPPEDPGAASPARRASS 374

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>MBB1A_HUMAN (Q9BQG0) Myb-binding protein 1A|
          Length = 1328

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 351  RRRRLVEALPGEAGLERPAAWGGGRNPSSLRPRRRQPNLQIP 226
            ++R+  +  P E G   PAA GG + PS  R +R +   ++P
Sbjct: 1182 KKRKSEDGTPAEDGT--PAATGGSQPPSMGRKKRNRTKAKVP 1221

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 317 RQDSSARRPGAAGETPPPSDPGDANPISKSPSPL 216
           +Q + A  P A GETP P+ P     +   P P+
Sbjct: 78  QQQTKASAPSAGGETPRPAVPKPGPGLKPGPRPV 111

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>PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate|
            phosphodiesterase-like 4 (EC 3.1.4.11) (Phosphoinositide
            phospholipase C-like 4) (Phospholipase C-like 4)
            (Fragment)
          Length = 1182

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 293  PGAAGETPPPSDPGDANPISKSPSPLSE 210
            PG A E P    PG  +P  K+P+ ++E
Sbjct: 994  PGPAPEAPAQEGPGSGSPRGKAPAAVAE 1021

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>GRAP1_MOUSE (Q8VD04) GRIP1-associated protein 1 (GRASP-1) (HCMV-interacting|
           protein)
          Length = 806

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 320 ERQDSSARRPGAAGETPPPSDPGDANPISKSPSPLSE 210
           ER    A RP A GE      PGD  P   +P PL+E
Sbjct: 152 ERYGKEAVRPSAVGEGQG-DPPGDVLPTPLAPMPLAE 187

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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = -1

Query: 296  RPGAAGETPPPSDPG----DANPISKSPSPL 216
            RPG+     PP DPG     A PI K P P+
Sbjct: 933  RPGSCRRGIPPEDPGVPPRRAGPIKKPPPPV 963

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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 353 DGDGDWSRRFPERQDSSARRPGAAGETPPPSDPG 252
           D    W+  + ++     + PGAAG  PPP+  G
Sbjct: 732 DYSAAWAEYYRQQAAYYGQTPGAAGPAPPPTQQG 765

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>XKR6_HUMAN (Q5GH73) XK-related protein 6|
          Length = 641

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 345 RRLVEALPGEAGLERPAAWGGGR---NPSSLRPRRRQPNLQIP 226
           RR   A  G+  L+ PAA G GR    PS+ RP    P ++ P
Sbjct: 83  RRSAAADGGDQPLQPPAAPGAGRQPPTPSAARPEPPPPQVERP 125

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>OXAA_STRAW (P59811) Membrane protein oxaA|
          Length = 428

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 12/46 (26%)
 Frame = -1

Query: 332 RRFPERQDSSARRPG---AAGETPPPS---------DPGDANPISK 231
           R+ P+RQ  S R+ G   AAGE+ P S         +P DA P +K
Sbjct: 350 RQQPKRQSKSQRQSGSAKAAGESEPKSTPLSLSKSDEPDDAKPAAK 395

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>V_TPMV (Q9QM81) Nonstructural protein V|
          Length = 282

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 347 DGDWSRRFPERQDSSARRPGAAGETPPPSDPG 252
           D  +S+  P++Q  S  + GAAG+ P P   G
Sbjct: 85  DHKYSKSRPKKQPRSGLQSGAAGKNPTPDGEG 116

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>ATG12_MAGGR (Q51P78) Autophagy-related protein 12 (Autophagy-related|
           ubiquitin-like modifier ATG12)
          Length = 181

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 299 RRPGAAGETPPPSDPGDANPISKSPSPLSE 210
           RRP  +  TPPP       P S S +P+ +
Sbjct: 15  RRPSLSTPTPPPPSSSSTAPASSSATPIPD 44

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>YGBT_ECOLI (Q46896) Hypothetical protein ygbT|
          Length = 305

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 287 AAGETPPPSDPGDANPISKSPSPLS 213
           AAGE  PP+ P DA P++  P P+S
Sbjct: 273 AAGEIQPPAPPEDAQPVA-IPLPVS 296

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>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 323 PERQDSSARRPGAAGETPPPSDPGDANPISKSPSPLS 213
           P R+  +ARR    G +P P  P  A P     +PL+
Sbjct: 757 PARRAPAARRSPGPGPSPTPRSPKHARPAELKLAPLT 793

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 290 GAAGETPPPSDPGDANPI 237
           G AG T PP +PGD  P+
Sbjct: 231 GGAGPTGPPGEPGDPGPM 248

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>PHOSP_TPMV (Q9WS39) Phosphoprotein (Protein P)|
          Length = 527

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 347 DGDWSRRFPERQDSSARRPGAAGETPPPSDPG 252
           D  +S+  P++Q  S  + GAAG+ P P   G
Sbjct: 85  DHKYSKSRPKKQPRSGLQSGAAGKNPTPDGEG 116

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>RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)|
          Length = 961

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 332 RRFPERQDSSARRPGAAGETPPPSDPGDANPISK 231
           R+   RQ + +  PGAA     P+DPGD + +++
Sbjct: 332 RQQERRQQALSMAPGAADAQMVPTDPGDFDQLTQ 365

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>SFTPD_BOVIN (P35246) Pulmonary surfactant-associated protein D precursor (SP-D)|
           (PSP-D)
          Length = 369

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 311 DSSARRPGAAGETPPPSDPGDANPISK 231
           + SA  PG  G+T PP  PG   P  +
Sbjct: 90  NGSAGEPGPKGDTGPPGPPGMPGPAGR 116

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>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1198

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 42  PKPKGRDAGLPSPSRFDSSP 101
           PK K  D G P P R DS P
Sbjct: 168 PKSKSTDVGAPKPGRKDSGP 187

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = -1

Query: 323 PERQDSSARRPGAAGETPPPS--------DPGDANPISKSPSPLSES 207
           P R  S  R PG    +P P         D   ++P S+SP+P S+S
Sbjct: 46  PSRDPSPYRSPGERTPSPSPRRDRSLSPRDQPHSHPRSRSPTPRSQS 92

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>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 353 DGDGDWSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPSP 219
           DG  D  RR P    +   RPGA     P +  G+A   S+ P P
Sbjct: 157 DGLSDPRRRAPRTNRNPGDRPGAGWTDGPGAPHGEAWRGSEQPDP 201

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>DUS8_HUMAN (Q13202) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC|
           3.1.3.16) (Dual specificity protein phosphatase hVH-5)
          Length = 625

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 293 PGAAGETP-PPSDPGDANPISKSPSPLSES 207
           PG    TP PP  P    P+ + P P SES
Sbjct: 310 PGTPSGTPEPPPSPAAGAPLPRLPPPTSES 339

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>VASP_BOVIN (Q2TA49) Vasodilator-stimulated phosphoprotein (VASP)|
          Length = 382

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -1

Query: 320 ERQDSSARRPGAAGETPPPSDPGDANPISKSPSP 219
           ER+ S+A  P AA    PP  PG   P    P P
Sbjct: 155 ERRASNAGGPPAASAGAPPPPPGPPPPPGPPPPP 188

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>SPDEF_HUMAN (O95238) SAM pointed domain-containing Ets transcription factor|
           (Prostate-derived Ets factor) (Prostate
           epithelium-specific Ets transcription factor)
           (Prostate-specific Ets)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 326 FPERQDSSARRPGAAGETPPPSDPGDANPISKSPSP 219
           +PE    +A+ PGA+    PP +P +  P+  S +P
Sbjct: 67  YPEDSSWAAKAPGASSREEPPEEP-EQCPVIDSQAP 101

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>HD_HUMAN (P42858) Huntingtin (Huntington disease protein) (HD protein)|
          Length = 3144

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 28  HHTQHQSQKAATPGFRPLRDLIRLP 102
           HHTQHQ     T     L+ L R P
Sbjct: 365 HHTQHQDHNVVTGALELLQQLFRTP 389

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>HD_RAT (P51111) Huntingtin (Huntington disease protein homolog) (HD|
           protein)
          Length = 3110

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 28  HHTQHQSQKAATPGFRPLRDLIRLP 102
           HHTQHQ     T     L+ L R P
Sbjct: 333 HHTQHQDHNVVTGALELLQQLFRTP 357

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>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD|
           protein)
          Length = 3119

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 28  HHTQHQSQKAATPGFRPLRDLIRLP 102
           HHTQHQ     T     L+ L R P
Sbjct: 342 HHTQHQDHNVVTGALELLQQLFRTP 366

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>CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin|
           repeat and pleckstrin homology domain-containing protein
           3)
          Length = 1544

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 281 GETPPPSDPGDANPIS 234
           G +PPP+DPGD  P S
Sbjct: 739 GVSPPPTDPGDRFPFS 754

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>ATS8_MOUSE (P57110) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 8) (ADAM-TS
           8) (ADAM-TS8) (METH-2)
          Length = 905

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -1

Query: 344 GDWSRRFPERQDSSARRPGAAGETPPPSDPGDANPISKSPSPL 216
           G W RR  E +D S +      E   P    DA P    P PL
Sbjct: 866 GSWQRRTVECRDPSGQASDTCDEALKPE---DAKPCGSQPCPL 905

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>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 487

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 305 SARRPGAAGETPPPSDPGDANPISKSPSPLSE 210
           S  RPGA  + PPP  P    P    P+   E
Sbjct: 283 STPRPGAGSQAPPPPPPSRPGPPPLPPTSSDE 314

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>CAP1_HUMAN (Q01518) Adenylyl cyclase-associated protein 1 (CAP 1)|
          Length = 474

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 338 WSRRFPERQDSSARRPG-AAGETPPPSDPGDANPISKSPSPLSES 207
           WS+  P  ++ S    G +AG  PPP  PG   P   + S   ES
Sbjct: 206 WSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPPPVSTSSGSDES 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,212,499
Number of Sequences: 219361
Number of extensions: 540940
Number of successful extensions: 4347
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4291
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result