ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl40f06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469640.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1013 Score = 252 bits (127), Expect = 9e-64 Identities = 169/183 (92%) Strand = Plus / Plus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 348 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 407 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 408 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 467 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 468 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 527 Query: 432 cca 434 ||| Sbjct: 528 cca 530
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 252 bits (127), Expect = 9e-64 Identities = 169/183 (92%) Strand = Plus / Minus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 29930120 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 29930061 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 29930060 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 29930001 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 29930000 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 29929941 Query: 432 cca 434 ||| Sbjct: 29929940 cca 29929938
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 252 bits (127), Expect = 9e-64 Identities = 169/183 (92%) Strand = Plus / Plus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 80486 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 80545 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 80546 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 80605 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 80606 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 80665 Query: 432 cca 434 ||| Sbjct: 80666 cca 80668
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 252 bits (127), Expect = 9e-64 Identities = 169/183 (92%) Strand = Plus / Minus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 96061 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 96002 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 96001 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 95942 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 95941 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 95882 Query: 432 cca 434 ||| Sbjct: 95881 cca 95879
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 252 bits (127), Expect = 9e-64 Identities = 169/183 (92%) Strand = Plus / Minus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 30021542 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 30021483 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 30021482 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 30021423 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || |||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||| Sbjct: 30021422 cttaactcatgcgggcatgcatccttatgtgctgagtgcagccaaagatgtgatgtctgc 30021363 Query: 432 cca 434 ||| Sbjct: 30021362 cca 30021360
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 242 bits (122), Expect = 8e-61 Identities = 180/198 (90%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| Sbjct: 185164 cagaatgctttggagcagttggcatccattgatctcattgagctatgcaaggaggccaga 185223 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 185224 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcatcatgtg 185283 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || ||||||||||| |||||||| ||||||||||| || ||||| ||||| || |||||| Sbjct: 185284 cttaactcatgtggccatgcctcattatgtgctgaatgcagccaaagatgcgacgtctgc 185343 Query: 432 cc-atttgcagaagtcca 448 || |||||||| |||||| Sbjct: 185344 ccaatttgcaggagtcca 185361
>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete cds Length = 160480 Score = 236 bits (119), Expect = 5e-59 Identities = 167/183 (91%) Strand = Plus / Plus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 112693 cagaatgcgttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 112752 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 112753 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcaccatgtg 112812 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct: 112813 cttaactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgtgacgtctgc 112872 Query: 432 cca 434 ||| Sbjct: 112873 cca 112875
>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf copia_LTR and Huck gypsy_LTR retrotransposons, complete sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR and Opie1 copia_LTR retrotransposons, complete sequence; Ji copia_LTR retrotransposon, complete sequence; and unknown protein (adh1B), cyclin H-1 (adh1C), unknown protein (adh1D), hypothetical protein (adh1E), and unknown protein (adh1F) genes, complete cds Length = 126039 Score = 236 bits (119), Expect = 5e-59 Identities = 167/183 (91%) Strand = Plus / Plus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 96024 cagaatgcgttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 96083 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 96084 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcaccatgtg 96143 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || ||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct: 96144 cttaactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgtgacgtctgc 96203 Query: 432 cca 434 ||| Sbjct: 96204 cca 96206
>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence Length = 78195 Score = 204 bits (103), Expect = 2e-49 Identities = 163/183 (89%) Strand = Plus / Plus Query: 252 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 311 ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 51854 cagaatgctttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 51913 Query: 312 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 371 ||||||| |||||||||||||| |||||||||||||| ||||||||||| | |||||| Sbjct: 51914 attgagcgttgccgtgcaactagagacttgagtagctgtggccgctatgttcgtcatgtg 51973 Query: 372 ctcaactcatgtgggcatgcctcgttatgtgctgagtgtagccagagatgtgatgtctgc 431 || ||||||||||| |||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct: 51974 cttaactcatgtggccatgcctcattatgtgctgagtgcagccaaagatgcgacatctgc 52033 Query: 432 cca 434 ||| Sbjct: 52034 cca 52036
>ref|XM_658398.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5886.2), mRNA Length = 2319 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ctcccaagtacgacagcgccg 246 ||||||||||||||||||||| Sbjct: 782 ctcccaagtacgacagcgccg 802
>ref|XM_750366.1| Aspergillus fumigatus Af293 3-isopropylmalate dehydratase (Afu2g11260) partial mRNA Length = 2334 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ctcccaagtacgacagcgccg 246 ||||||||||||||||||||| Sbjct: 782 ctcccaagtacgacagcgccg 802
>gb|AY657636.1| Synthetic construct Peudomonas aeruginosa clone FLH041267.01F PA2614 gene, partial cds Length = 627 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 acgacagcgccgccgtccag 254 |||||||||||||||||||| Sbjct: 65 acgacagcgccgccgtccag 84
>emb|AL158152.18| Human DNA sequence from clone RP11-2B6 on chromosome 9q22.2-31.1 Contains a novel gene and a CpG island, complete sequence Length = 114517 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gctgagtgtagccagagatg 421 |||||||||||||||||||| Sbjct: 21515 gctgagtgtagccagagatg 21534
>emb|AL139818.15| Human DNA sequence from clone RP11-311B18 on chromosome 10 Contains a novel gene, complete sequence Length = 103124 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 cagagatgtgatgtctgccc 433 |||||||||||||||||||| Sbjct: 64814 cagagatgtgatgtctgccc 64833
>emb|BX539345.7| Zebrafish DNA sequence from clone DKEY-120M4 in linkage group 9, complete sequence Length = 94606 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ggtgctggagagggcttgcggatg 197 ||||||||||||||| |||||||| Sbjct: 48353 ggtgctggagagggcgtgcggatg 48330
>gb|AE004690.1| Pseudomonas aeruginosa PAO1, section 251 of 529 of the complete genome Length = 10325 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 acgacagcgccgccgtccag 254 |||||||||||||||||||| Sbjct: 1989 acgacagcgccgccgtccag 1970 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,713,313 Number of Sequences: 3902068 Number of extensions: 2713313 Number of successful extensions: 43692 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43635 Number of HSP's gapped (non-prelim): 57 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
