ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40f04 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 174 bits (440), Expect = 6e-44 Identities = 86/88 (97%), Positives = 88/88 (100%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 60 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEV 382 RKGRFAKDGLIQYRIVCQQVNVSSLE+V Sbjct: 61 RKGRFAKDGLIQYRIVCQQVNVSSLEDV 88
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 160 bits (405), Expect = 7e-40 Identities = 78/88 (88%), Positives = 85/88 (96%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+WQKPLEKIM KY++LCVDL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEV 382 ++GRFAKDGLIQYRIVCQQVNVSSLEEV Sbjct: 61 KRGRFAKDGLIQYRIVCQQVNVSSLEEV 88
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 158 bits (400), Expect = 3e-39 Identities = 77/88 (87%), Positives = 84/88 (95%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+WQK LE+IM KYVELCVD+ Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM 60 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEV 382 R+GRFAKDGLIQYRIVCQQVN++SLEEV Sbjct: 61 RRGRFAKDGLIQYRIVCQQVNINSLEEV 88
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 114 bits (286), Expect = 4e-26 Identities = 53/87 (60%), Positives = 69/87 (79%) Frame = +2 Query: 122 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 301 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 302 KGRFAKDGLIQYRIVCQQVNVSSLEEV 382 K AK+GL QY+ +CQQVN+ SLE+V Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDV 89
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 114 bits (286), Expect = 4e-26 Identities = 53/87 (60%), Positives = 69/87 (79%) Frame = +2 Query: 122 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 301 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 302 KGRFAKDGLIQYRIVCQQVNVSSLEEV 382 K AK+GL QY+ +CQQVN+ SLE+V Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDV 89
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 99.4 bits (246), Expect = 2e-21 Identities = 48/85 (56%), Positives = 62/85 (72%) Frame = +2 Query: 128 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKG 307 F KPE ALKRAEELI VG++ AL LHD I ++R++ W E+IM+K++ELCVDL+K Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKKQ 65 Query: 308 RFAKDGLIQYRIVCQQVNVSSLEEV 382 AKD L QY+ + QQ+NV SLE V Sbjct: 66 HLAKDALFQYKALTQQINVKSLETV 90
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 83.2 bits (204), Expect = 1e-16 Identities = 41/75 (54%), Positives = 59/75 (78%), Gaps = 2/75 (2%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKP--LEKIMMKYVELCVDLRKG 307 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P +E ++ K++E+ V+L+KG Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATPSTVEPVVFKFLEIGVELKKG 65 Query: 308 RFAKDGLIQYRIVCQ 352 + KDGL QY+ + Q Sbjct: 66 KLLKDGLHQYKKLIQ 80
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 81.3 bits (199), Expect = 5e-16 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 1/84 (1%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQK-PLEKIMMKYVELCVDLRKGR 310 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Q LE IMM+++ELCV LRKG+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLRKGK 66 Query: 311 FAKDGLIQYRIVCQQVNVSSLEEV 382 AK+GL Y+ Q +V+++E V Sbjct: 67 IAKEGLYTYKNAVQNTSVTAIENV 90
>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid| antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3060 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = +2 Query: 188 QAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYRIVCQQVNVS 367 QA L+ L D T R Q + ++ + C DL+ + GLI +I+CQ +S Sbjct: 1245 QAVLRGLIDYDTGIRLLETQLMISGLISPELRKCFDLKDAK--SHGLIDEQILCQLKELS 1302 Query: 368 SLEEV 382 +E+ Sbjct: 1303 KAKEI 1307
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 265 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIF 1481 Query: 266 MMKYVELCVDLRK 304 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 265 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIF 1481 Query: 266 MMKYVELCVDLRK 304 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>SL9A1_PIG (P48762) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 818 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_CRIGR (P48761) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 822 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 816 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_BOVIN (Q28036) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 817 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 326 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 107 LAPAMATFAKPENALKRAE--ELIHVGQKQAALQALHDLITSKRYRSWQKPLE 259 +APA A+ P ++ A+ E G + AA ALH L ++++ W+K +E Sbjct: 1 MAPAAAS---PPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVE 50
>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (RING finger protein 69) Length = 326 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 107 LAPAMATFAKPENALKRAE--ELIHVGQKQAALQALHDLITSKRYRSWQKPLE 259 +APA A+ P ++ A+ E G + AA ALH L ++++ W+K +E Sbjct: 1 MAPAAAS---PPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVE 50
>SL9A1_RAT (P26431) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_MOUSE (Q61165) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_HUMAN (P19634) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) (Na(+)/H(+) antiporter, amiloride-sensitive) (APNH) Length = 815 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>PROA_PSYAR (Q4FUZ5) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 430 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKR 232 M K A RA + G K AAL A+HD++ + + Sbjct: 10 MQNVGKEARAASRALAAANTGDKNAALMAIHDVLKNAK 47
>AROC_STRCO (Q9KXQ4) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 394 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Frame = +1 Query: 85 SRSAPET-PRPGHGDLR--------EARERAQESGGVDTCWTKAGCAAGAA*SHYIKE 231 +R+AP T PRPGH DL EAR + + +T A A GA Y+KE Sbjct: 105 ARNAPLTRPRPGHADLAGMQKYGFDEARPILERASARETA---ARVALGAVARSYLKE 159
>AROC_STRAW (Q827S0) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 394 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Frame = +1 Query: 85 SRSAPET-PRPGHGDLR--------EARERAQESGGVDTCWTKAGCAAGAA*SHYIKE 231 +R+AP T PRPGH DL EAR + + +T A A GA Y+KE Sbjct: 105 ARNAPLTRPRPGHADLAGMQKYGFDEARPILERASARETA---ARVALGAVARSYLKE 159
>ISPH_LISMO (P58676) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 331 Score = 27.3 bits (59), Expect = 9.2 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEK----IMMKYVELCVDLR 301 +PE A A +++H+ + +A + AL L++ K + + Q + K +M Y+ Sbjct: 133 EPEGAYGTAPDVVHLVETKADIDAL-SLLSDKIFVTNQTTMSKWDVADLMHYI------- 184 Query: 302 KGRFAKDGLIQYRIVCQQVNV 364 KG+F K IQ++ +C V Sbjct: 185 KGKFPK--AIQHQEICMATQV 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,297,743 Number of Sequences: 219361 Number of extensions: 640197 Number of successful extensions: 1782 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1780 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
