ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40f03 |
|---|---|
| Clone Library Name | barley_pub |
>COBS_RHILO (Q98KP0) Cobalamin synthase (EC 2.-.-.-)| Length = 259 Score = 32.7 bits (73), Expect = 0.42 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +2 Query: 176 LAAASWVEPAPGILPPKIGTISLFSAARFGVGRG 277 LAAA W P G+L IG I +A RFG+ G Sbjct: 39 LAAAIWAAPVAGLLVGLIGAIVFATAERFGLAMG 72
>TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)| Length = 1067 Score = 32.0 bits (71), Expect = 0.71 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -1 Query: 443 TARGSGAAYRRGSVEWKYRGAGPANGLA---GARDRLLRS 333 TARGS A R G V W +GPA LA G R+RL R+ Sbjct: 300 TARGSAVAVR-GGVHWVTHRSGPARALAATPGVRNRLPRT 338
>ENL_HUMAN (Q03111) Protein ENL| Length = 559 Score = 31.6 bits (70), Expect = 0.93 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -2 Query: 340 SAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKK 242 S + PG +P ++ FSD+ P+ D S+RG+K Sbjct: 308 SRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEK 340
>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2| Length = 1009 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -2 Query: 316 PTRPGTAPFSDRIPSPDAKSSRGKKRNRPD 227 P G PF+ R P PDA ++ G++ RP+ Sbjct: 225 PAPQGDRPFNQRAPRPDANANFGQRAPRPE 254
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/45 (51%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -1 Query: 389 RGAGPANGLAGARDRLLRS-ATRAKPDAARN-SPIFRSNSLSRRQ 261 RG GP AGAR RS A AARN S RS SLSRR+ Sbjct: 1214 RGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRE 1258
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/44 (38%), Positives = 20/44 (45%) Frame = -2 Query: 361 PERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRP 230 PE A S+AA PG P P +AP P + SS RP Sbjct: 1417 PEDAATSAAAAPGEGPAAPSSAP-------PPSNSSSSSAPRRP 1453
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -2 Query: 355 RATG---SSAAP--PGLNPTRPGTAPFSDRIPSPDA 263 RA G SSAAP PG P PG P S+ P P A Sbjct: 218 RAVGRGPSSAAPAAPGRTPPPPGPPPLSEAAPKPRA 253
>CHEB1_CAUCR (O87717) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 344 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = +3 Query: 243 FFPRLDLASGEGIR-SENGAV--PGRVGFSPGGAAEEPVARS 359 F RLD +SG ++ + +GA+ PG+V +PGGA V RS Sbjct: 198 FAARLDRSSGAKVQEASDGALLEPGKVYVAPGGATHLEVVRS 239
>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC| 2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K)) (Transglutaminase-1) (Epidermal TGase) Length = 817 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 325 GLNPTRPGTAPFSDRIPSPDAKSSRGKKRN 236 G NP +P T P + P PD +S RG R+ Sbjct: 13 GGNPLQPPTTPSPEPEPEPDGRSRRGGGRS 42
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 325 GLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 221 G P++ AP + +PSP +S G RP+LR Sbjct: 1982 GRAPSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016
>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2| Length = 964 Score = 28.9 bits (63), Expect = 6.0 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Frame = -3 Query: 327 PG*TRRGPEQPHFQIEFPLPTPNLAAEKREIVPIFGGRMPGAG------STHDAAARGRG 166 PG RGP P P P AA + P GG PG G S D GRG Sbjct: 284 PGGDNRGPRPAGAGDRGPRPAPAAAAPSQPPAPAPGGSRPGKGKKGGERSWDDNKKGGRG 343
>Y737_DROME (P83475) Hypothetical protein CG31737 in chromosome 2| Length = 263 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 370 FAGPAPRYFHSTLPRRYAAPEPR 438 + GP PR + PRRY+ P PR Sbjct: 194 YPGPGPRGYPGQGPRRYSCPGPR 216
>ACON_RICCN (Q92G90) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 878 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 234 VPIFGGRMPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRR 91 V IF G+ G+GS+ D AA+G G +G+ ++ + F R R Sbjct: 750 VVIFAGKEYGSGSSRDWAAKG--------PGLLGVKAVIAESFERIHR 789
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 28.5 bits (62), Expect = 7.9 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = -3 Query: 261 NLAAEKREIVPIFGGRMPGAGSTHDAAARGRGERWTRINGTMGIYSIFSGMFSRTRR 91 N AA+ +V + GG+ G+GS+ D AA+G TR+ +G+ ++ + F R R Sbjct: 821 NYAAQNIPLV-VLGGKEYGSGSSRDWAAKG-----TRL---LGVRAVIAESFERIHR 868 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,297,589 Number of Sequences: 219361 Number of extensions: 1161144 Number of successful extensions: 4836 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4418 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4831 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
