ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
3dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
4dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 103 5e-19
6ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.38
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
8dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
9dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
10dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
11gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.5
12gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 42 1.5
13emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
14gb|BC025080.1| Mus musculus apoptosis antagonizing transcription... 40 6.0
15ref|NM_019816.1| Mus musculus apoptosis antagonizing transcripti... 40 6.0
16ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing ... 40 6.0
17emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA 40 6.0
18gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 1... 40 6.0
19ref|XM_777733.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.0
20emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.0
21emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on ch... 40 6.0
22dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 6.0
23gb|AC003063.7| Mus musculus Chromosome 16 BAC Clone b40-o20 Synt... 40 6.0
24dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 6.0
25gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.0
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
27gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds 40 6.0
28gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, comple... 40 6.0
29gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone... 40 6.0
30dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
31gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone... 40 6.0
32gb|AC078895.34| Mus musculus strain C57BL/6J chromosome 16 clone... 40 6.0 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                            
Query: 288      gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 347
                ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388

                                                                            
Query: 348      gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 407
                | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | 
Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448

                                                       
Query: 408      cccccggcggtacgcggcgcctgagccccgcgccgtgcc 446
                ||||||||||| ||| || |||| |||||||||||||||
Sbjct: 19187449 cccccggcggttcgccgctcctgtgccccgcgccgtgcc 19187487



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 158      catctttctcctcttcccctc 178
                |||||||||||||||||||||
Sbjct: 13847317 catctttctcctcttcccctc 13847297
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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
           insert sequence
          Length = 3612

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 288 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 347
           ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330

                                                                       
Query: 348 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 407
           | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | 
Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390

                                                  
Query: 408 cccccggcggtacgcggcgcctgagccccgcgccgtgcc 446
           ||||||||||| ||| || |||| |||||||||||||||
Sbjct: 391 cccccggcggttcgccgctcctgtgccccgcgccgtgcc 429
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>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full
           insert sequence
          Length = 2576

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 288 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 347
           ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320

                                                                       
Query: 348 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 407
           | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | 
Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380

                                                  
Query: 408 cccccggcggtacgcggcgcctgagccccgcgccgtgcc 446
           ||||||||||| ||| || |||| |||||||||||||||
Sbjct: 381 cccccggcggttcgccgctcctgtgccccgcgccgtgcc 419
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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
           insert sequence
          Length = 3581

 Score =  117 bits (59), Expect = 3e-23
 Identities = 134/159 (84%)
 Strand = Plus / Plus

                                                                       
Query: 288 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 347
           ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376

                                                                       
Query: 348 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 407
           | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | 
Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436

                                                  
Query: 408 cccccggcggtacgcggcgcctgagccccgcgccgtgcc 446
           ||||||||||| ||| || |||| |||||||||||||||
Sbjct: 437 cccccggcggttcgccgctcctgtgccccgcgccgtgcc 475
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score =  103 bits (52), Expect = 5e-19
 Identities = 134/160 (83%), Gaps = 1/160 (0%)
 Strand = Plus / Plus

                                                                          
Query: 288    gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 346
              ||||||||||  ||| ||||| ||||| || || || |||||||||||| | ||||| ||
Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909

                                                                          
Query: 347    tgtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgc 406
              || |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || |
Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969

                                                      
Query: 407    tcccccggcggtacgcggcgcctgagccccgcgccgtgcc 446
               ||||||||||| ||| || |||| |||||||||||||||
Sbjct: 120970 gcccccggcggttcgccgctcctgtgccccgcgccgtgcc 121009
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>ref|NM_184141.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1870

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 168 ctcttcccctcgcggcggcgtc 189
           ||||||||||||||||||||||
Sbjct: 80  ctcttcccctcgcggcggcgtc 101
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 168     ctcttcccctcgcggcggcgtc 189
               ||||||||||||||||||||||
Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027
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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A04
          Length = 141079

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 168    ctcttcccctcgcggcggcgtc 189
              ||||||||||||||||||||||
Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341
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>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C01
          Length = 78600

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 168   ctcttcccctcgcggcggcgtc 189
             ||||||||||||||||||||||
Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330
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>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full
           insert sequence
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 168 ctcttcccctcgcggcggcgtc 189
           ||||||||||||||||||||||
Sbjct: 80  ctcttcccctcgcggcggcgtc 101
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 373     gccggccccgcgccgcggtac 393
               |||||||||||||||||||||
Sbjct: 3378810 gccggccccgcgccgcggtac 3378830
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 66      aaaatagtattttctctaaac 86
               |||||||||||||||||||||
Sbjct: 1299937 aaaatagtattttctctaaac 1299957
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>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03,
             complete sequence
          Length = 175555

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 158   catctttctcctcttcccctc 178
             |||||||||||||||||||||
Sbjct: 60976 catctttctcctcttcccctc 60956
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>gb|BC025080.1| Mus musculus apoptosis antagonizing transcription factor, mRNA
           (cDNA clone MGC:35916 IMAGE:2648117), complete cds
          Length = 1800

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 catctttctcctcttcccct 177
           ||||||||||||||||||||
Sbjct: 251 catctttctcctcttcccct 232
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>ref|NM_019816.1| Mus musculus apoptosis antagonizing transcription factor (Aatf),
           mRNA
          Length = 1844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 catctttctcctcttcccct 177
           ||||||||||||||||||||
Sbjct: 264 catctttctcctcttcccct 245
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>ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing transcription factor
           (Aatf), mRNA
          Length = 1883

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 catctttctcctcttcccct 177
           ||||||||||||||||||||
Sbjct: 325 catctttctcctcttcccct 306
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>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA
          Length = 1651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 316  ggtttagcccgggtggcgct 335
            ||||||||||||||||||||
Sbjct: 1111 ggtttagcccgggtggcgct 1130
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>gb|AC005817.8| Mus musculus strain 129/Sv clone ct7-581i11 map 16, complete sequence
          Length = 188708

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     caatctgaagtgcagaagag 25
             ||||||||||||||||||||
Sbjct: 24304 caatctgaagtgcagaagag 24285
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>ref|XM_777733.1| PREDICTED: Strongylocentrotus purpuratus similar to
            centrosome-associated protein 350 (LOC577510), mRNA
          Length = 10727

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  atccgcgtccatctttctcctctt 172
            |||||| |||||||||||||||||
Sbjct: 6834 atccgcctccatctttctcctctt 6811
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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    tcgccggccccgcgccgcgg 390
              ||||||||||||||||||||
Sbjct: 229143 tcgccggccccgcgccgcgg 229162
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>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete
             sequence
          Length = 198743

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   catctttctcctcttcccct 177
             ||||||||||||||||||||
Sbjct: 52540 catctttctcctcttcccct 52559
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>dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430031I20 product:apoptosis
           antagonizing transcription factor, full insert sequence
          Length = 1790

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 catctttctcctcttcccct 177
           ||||||||||||||||||||
Sbjct: 262 catctttctcctcttcccct 243
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>gb|AC003063.7| Mus musculus Chromosome 16 BAC Clone b40-o20 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 128143

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     caatctgaagtgcagaagag 25
             ||||||||||||||||||||
Sbjct: 93497 caatctgaagtgcagaagag 93478
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>dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830465M17 product:traube, full insert
           sequence
          Length = 1995

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 catctttctcctcttcccct 177
           ||||||||||||||||||||
Sbjct: 288 catctttctcctcttcccct 269
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    tcgccggccccgcgccgcgg 390
              ||||||||||||||||||||
Sbjct: 584216 tcgccggccccgcgccgcgg 584197
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 166     tcctcttcccctcgcggcggcgtc 189
               |||||||||| |||||||||||||
Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577
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>gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds
          Length = 1844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 catctttctcctcttcccct 177
           ||||||||||||||||||||
Sbjct: 264 catctttctcctcttcccct 245
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>gb|AC009476.3| Homo sapiens BAC clone RP11-207O14 from 2, complete sequence
          Length = 184406

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    tattttctctaaacatcaac 92
             ||||||||||||||||||||
Sbjct: 22939 tattttctctaaacatcaac 22958
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>gb|AC079043.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-397e16, complete
             sequence
          Length = 214471

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     caatctgaagtgcagaagag 25
             ||||||||||||||||||||
Sbjct: 24326 caatctgaagtgcagaagag 24307
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>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049G15
          Length = 155303

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 166   tcctcttcccctcgcggcggcgtc 189
             |||||||||| |||||||||||||
Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239
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>gb|AC087064.27| Mus musculus strain C57BL/6J chromosome 16 clone rp23-428i4, complete
              sequence
          Length = 211848

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      caatctgaagtgcagaagag 25
              ||||||||||||||||||||
Sbjct: 210431 caatctgaagtgcagaagag 210450
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>gb|AC078895.34| Mus musculus strain C57BL/6J chromosome 16 clone rp23-372h6, complete
             sequence
          Length = 211256

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     caatctgaagtgcagaagag 25
             ||||||||||||||||||||
Sbjct: 62147 caatctgaagtgcagaagag 62166


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,395,652
Number of Sequences: 3902068
Number of extensions: 3395652
Number of successful extensions: 67496
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67198
Number of HSP's gapped (non-prelim): 297
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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