>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing|
           protein 6) (Fragment)
          Length = 608

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
 Frame = +2

Query: 92  HTRQHSL----AAAKSGPPAG--------------GQAQIPFQVFASIRLGPIERASTRA 217
           HT  HSL    A  K   PAG              GQAQ P  V +  ++ P  RA    
Sbjct: 12  HTHTHSLTLFCAVVKPTCPAGKLPERGTKEPGRGSGQAQQPTAVESGAQVRPHSRALRGP 71

Query: 218 PR*RLCRIGSERTAVAVGGGSTRGVSARSSAG 313
           P    CR G  R A ++      G+S+R++ G
Sbjct: 72  PNFLACRSGGFRAAQSL------GLSSRAAQG 97

>GP135_HUMAN (Q8IZ08) Probable G-protein coupled receptor 135|
          Length = 494

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
 Frame = +2

Query: 101 QHSLAAAKSGPPAGGQ-----AQIPFQVFASIRLGPIERASTRAPR*RLCRIGSERTAVA 265
           QHS A + +GPP G       A + F   A+  LG +  AS               TA A
Sbjct: 19  QHSGAPSAAGPPGGTSSAATAAVLSFSTVATAALGNLSDAS------------GGGTAAA 66

Query: 266 VGGGSTRGVSARSSAG 313
            GGG   G  A   AG
Sbjct: 67  PGGGGLGGSGAAREAG 82

>K0586_HUMAN (Q9BVV6) Protein KIAA0586|
          Length = 1533

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 351  PPHELLRARGSQHPALLLAETPRVDP---PPTATAVLS 247
            P  E+   +G   PA++L  TP V P   PP A AV +
Sbjct: 1078 PVKEICAEKGDDMPAIMLVNTPTVTPTTTPPPAAAVFT 1115

>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 381 DETRRSTGGGPPHELLRARGSQHPALLLAETPRVDPPPTA-TAVLSE 244
           +ET R  GG  PH LL A  S+     L+E   V  P T+ T V+ E
Sbjct: 148 EETPRGQGGTQPHRLLLAEDSEEEVDSLSERCVVKGPKTSLTTVIPE 194

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 113 AAAKSGPPAG---GQAQIPFQVFASIRLGPIERASTRAPR*RLCRIGSERTAVAVGGGST 283
           AAA S PP+    G  + P ++ A+ R  P  +A   +P  R    G+    + V  G T
Sbjct: 377 AAAVSAPPSSRSRGGRRDP-RLPAAPRAAPAAQARACSPEPREEGRGA---GLGVAAGET 432

Query: 284 RGVSARSSAGCWDPRARRSS*GGPPPV 364
            G  A S  G  + RAR     GPP V
Sbjct: 433 AGWGAGSEEGRGERRARLLGEAGPPRV 459

>YNIA_ECOLI (P77739) Hypothetical protein yniA|
          Length = 286

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 213 RVLARSIGPSLIEAKTWNGICACPPAGGPLFAAAKLCWRVWWEKRGCE 70
           R+ +    PSL+    W+G CA  P G  +F  A      +W  R C+
Sbjct: 179 RLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPA-----CYWGDRECD 221

>YNIA_ECO57 (P58065) Hypothetical protein yniA|
          Length = 286

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 213 RVLARSIGPSLIEAKTWNGICACPPAGGPLFAAAKLCWRVWWEKRGCE 70
           R+ +    PSL+    W+G CA  P G  +F  A      +W  R C+
Sbjct: 179 RLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPA-----CYWGDRECD 221

>YNIA_KLEPN (P46382) Hypothetical protein in tonB 3'region (Fragment)|
          Length = 123

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 189 PSLIEAKTWNGICACPPAGGPLFAAAKLCWRVWWEKRGCE 70
           PSL+    W+G CA  P G  +F  A      +W  R C+
Sbjct: 20  PSLLHGDLWSGNCALGPDGPYIFDPA-----CYWGDRECD 54

>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)|
           (hTFIIIB90) (B-related factor 1) (BRF-1)
          Length = 676

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 326 RARRSS*GGPPPVDLLVSSQPPVRASARRLXR 421
           R   S  GG PP D    SQPP RAS ++L R
Sbjct: 543 RDLNSKGGGSPPRD---DSQPPERASTKKLSR 571

>YNIA_ENTAE (P46381) Hypothetical protein in tonB 3'region (Fragment)|
          Length = 118

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 189 PSLIEAKTWNGICACPPAGGPLFAAAKLCWRVWWEKRGCE 70
           PSL+    W+G CA  P G  +F  A      +W  R C+
Sbjct: 20  PSLLHGDLWSGNCALGPNGPYIFDPA-----CYWGDRECD 54

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = +2

Query: 182 RLGPIERASTRAPR*RLCRIGSERTAVAVGGGSTRGVSARSSAGC-WDPRARRSS*GGP- 355
           RLGP      R  R R  + G  R        ++ G S+  S G  W   + R +   P 
Sbjct: 135 RLGPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPR 194

Query: 356 --PPVDLLVSSQPPVRAS 403
             PP     +S PP RAS
Sbjct: 195 ATPPTWQRSTSMPPSRAS 212

>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = -3

Query: 357  GGPPHELLRARGSQHPALLLAETPRVDPPPTATAVLSEPIRHSR*RGARVLARSIGPSLI 178
            G PP +    + ++ P     ETP   P  +A A  + P + +    A     +  P+  
Sbjct: 2774 GLPPSDSNVTQSTKEPPKPAVETPAAAPAKSAAAPAAAPAKSAAAPAAAPAKSAAAPAAA 2833

Query: 177  EAKTWNGICACPPAGGPLFAAA 112
             AK+     A  PA  P  +AA
Sbjct: 2834 PAKS-----AAAPAAAPAKSAA 2850

>IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1) (IRAK) (Pelle-like protein kinase) (mPLK)
          Length = 710

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +2

Query: 245 SERTAVAVGGGSTRGVSARSSAGCWDPRARRSS*GGPPPVDLLVSSQPP 391
           S R A    GG+TR  S RSS G + P       G P     L+SS+PP
Sbjct: 611 SFREASCTQGGTTRESSVRSSPG-FQPTTME---GSPTGSSSLLSSEPP 655

>ECR_HELVI (O18473) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
           (HvEcR)
          Length = 576

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -3

Query: 279 DPPPTATAVLSEPIRHSR*RGARVLARSIGPSLIEAKTWNGICACPPAGGPLFAAAK-LC 103
           DPPP   A + E ++H       V+ R +   L+E      +        PL A  K L 
Sbjct: 273 DPPPPEAARILECVQH------EVVPRFLNEKLMEQNRLKNV-------PPLTANQKSLI 319

Query: 102 WRVWWEKRGCEEDDEEGKRRL 40
            R+ W + G E+  EE  +R+
Sbjct: 320 ARLVWYQEGYEQPSEEDLKRV 340

>DMXL1_MOUSE (Q6PNC0) Protein DmX-like 1 (X-like 1 protein)|
          Length = 3013

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 141 PAGGPLFAAAKLCWRVWWEKRGCEEDDEEGKRRLNFLRW 25
           PAG  L   +  C ++W   R   ED+   K  LNF  W
Sbjct: 120 PAGNRLLTGSS-CLQLWCNSRKQTEDENPDKTDLNFGNW 157

>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 263  AVGGGSTRGVSARSSAGCWDPRARRSS*GGPPPVD 367
            A GGGS  GV+   +AGC       ++ GGP P D
Sbjct: 963  AAGGGSGPGVAGAGNAGC-------TATGGPEPPD 990

>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 542

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 147 CPPA--GGPLFAAAKLCWRVWWEKRGCEEDDEEGK 49
           C P   G   F   K+ W V  E+ G  ED+EEG+
Sbjct: 356 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 390

>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 147 CPPA--GGPLFAAAKLCWRVWWEKRGCEEDDEEGK 49
           C P   G   F   K+ W V  E+ G  ED+EEG+
Sbjct: 359 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 393

>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis|
           pigmentosa 1-like protein 1)
          Length = 1859

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +2

Query: 272 GGSTR---GVSARSSAGCWDPRARRS 340
           G  TR    V+ARS  GCW P A++S
Sbjct: 243 GNRTRKLSSVTARSERGCWGPNAKQS 268


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,510,135
Number of Sequences: 219361
Number of extensions: 1021403
Number of successful extensions: 3674
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3673
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)