ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40e10 |
|---|---|
| Clone Library Name | barley_pub |
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 95.9 bits (237), Expect = 4e-20 Identities = 45/78 (57%), Positives = 57/78 (73%) Frame = +2 Query: 212 EAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 391 E + D NRYL DD DT++ RV++ KDKR +EM T DQM+NAMKINDW+S Sbjct: 22 EVNEVQNDDVNNRYLQSGSEDDDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWVS 81 Query: 392 LQESFDKLNKQLEKVVRV 445 LQE+FDK+NKQLEKV+R+ Sbjct: 82 LQENFDKVNKQLEKVMRI 99
>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 935 Score = 91.7 bits (226), Expect = 8e-19 Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 3/86 (3%) Frame = +2 Query: 197 DSEKSEAGDGGRDVS-KNRYLHREDSDDSDTES--HRVIRSLKDKRNDEMKATADQMRNA 367 D E S+ D + K++YL ++DDSD + RV++S KDKR DEM +T DQ++NA Sbjct: 23 DDEPSDTEPAPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNA 82 Query: 368 MKINDWLSLQESFDKLNKQLEKVVRV 445 +KINDW+SLQESFDK+NKQLEKV+RV Sbjct: 83 IKINDWVSLQESFDKINKQLEKVMRV 108
>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa| subunit (eIF3 p93) Length = 918 Score = 52.8 bits (125), Expect = 4e-07 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Frame = +2 Query: 203 EKSEAGDGGRDVSKNRYLHREDSDDS--DTESHRVIRSLKDKRNDEMKATADQMRNAMKI 376 EK EA G ++L E S++S + E RV++S KDKR +E + + ++NAM Sbjct: 142 EKEEAKPAGL-----KFLRGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSS 196 Query: 377 NDWLSLQESFDKLNKQLEK 433 N+W+ + FD LNK +K Sbjct: 197 NNWIVVSNEFDHLNKVSQK 215
>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit| (eIF3 p93) (Nuclear transport protein NIP1) Length = 812 Score = 44.3 bits (103), Expect = 1e-04 Identities = 21/83 (25%), Positives = 42/83 (50%) Frame = +2 Query: 200 SEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIN 379 SE + G G K+ D + + + +V++S K+K DEM+ +++ A + Sbjct: 78 SEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLLDEMQDVYNKISQAENSD 137 Query: 380 DWLSLQESFDKLNKQLEKVVRVN 448 DWL++ FD +++ L + + N Sbjct: 138 DWLTISNEFDLISRLLVRAQQQN 160
>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) Length = 913 Score = 43.5 bits (101), Expect = 2e-04 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Frame = +2 Query: 197 DSEKSEAGDG------GRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 358 +SE S +G+ G + K L ED +D+ RV+RS KDKR +E+ + Sbjct: 12 ESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTK----RVVRSAKDKRFEELTNLIRTI 67 Query: 359 RNAMKINDWLSLQESFDKLNKQLEK 433 RNAMKI D E F+ L K K Sbjct: 68 RNAMKIRDVTKCLEEFELLGKAYGK 92
>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3| subunit 8 (eIF3 p110) (eIF3c) Length = 898 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Frame = +2 Query: 197 DSEKSEAGDGGRDVSKNRYLHREDSDD----SDTESHRVIRSLKDKRNDEMKATADQMRN 364 DS+ S + D D N+ D D + + RV+R+ KDK+ DE+K Q R+ Sbjct: 12 DSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRD 71 Query: 365 AMKINDWLSLQESFDKLNKQLEK 433 A D L FD L K +K Sbjct: 72 AKSNKDLNRLLTGFDSLAKAYDK 94
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 32.0 bits (71), Expect = 0.73 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = -1 Query: 224 HHQLLIFHYRSLVL-----TQSRPPPPQSHCLPVPKN 129 HHQLL+ + + + S+ PPP HC+P+P + Sbjct: 319 HHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355
>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1060 Score = 31.6 bits (70), Expect = 0.95 Identities = 18/72 (25%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Frame = +2 Query: 233 DVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIND--WLSLQESF 406 DV+ ++R+ S + + +I +RNDE++ D++ A++ + WL+L++ Sbjct: 946 DVTLFPEIYRQFSGELEQGKFYLISGKVTERNDELQLVTDRISPALETDRKLWLNLRD-- 1003 Query: 407 DKLNKQLEKVVR 442 DK N+++ +++R Sbjct: 1004 DKYNQKISQILR 1015
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 11/81 (13%) Frame = -1 Query: 335 SHHCACPSTSESHDGSQYQSRHCP----------LYANSGSWTHHD-PHHQLLIFHYRSL 189 SH + PST+ + D Q H P SG W P +F L Sbjct: 8 SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQRQFPVLTTTVFFSLFL 67 Query: 188 VLTQSRPPPPQSHCLPVPKNE 126 P PPQ H P P + Sbjct: 68 SFPPHPPRPPQDHHRPTPARD 88
>GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry proximal)| (BSH4) Length = 449 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 221 DGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 358 DG +D + N L DSD SDTES I + +R TA+Q+ Sbjct: 149 DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQL 194
>ZN37A_HUMAN (P17032) Zinc finger protein 37A (Zinc finger protein KOX21)| Length = 561 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = -1 Query: 242 WTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP-------KNEMPWLLFVCFPS 93 W H DP + L YR ++L +C+P P K E PW+L FPS Sbjct: 22 WQHLDPAQRTL---YRDVMLENYSHLVSVGYCIPKPEVILKLEKGEEPWILEEKFPS 75
>TSSC1_MACFA (Q4R571) Protein TSSC1| Length = 387 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 236 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 391 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357
>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal| transferable fragment candidate gene 1 protein) (Tumor-suppressing STF cDNA 1 protein) Length = 387 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 236 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 391 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 357
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/68 (27%), Positives = 26/68 (38%) Frame = +2 Query: 197 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 376 DSE E + S++ LHR DSD+E H D N+ + N + Sbjct: 68 DSENDEPSNANASDSESEELHRPKDSDSDSEEH-AESPASDSENEPVNQHGSDSENEELL 126 Query: 377 NDWLSLQE 400 N S E Sbjct: 127 NGHASDSE 134
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 10/52 (19%) Frame = -1 Query: 260 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 135 Y G W HH P H L H+ ++ Q +P PPQ +PVP Sbjct: 39 YEPMGGWLHHQIIPVLSQQHSPSHSLPPQHHIPIMAAQ-QPAPPQQPVMPVP 89
>TSSC1_PONPY (Q5RE10) Protein TSSC1| Length = 414 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = +2 Query: 236 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLS 391 +S + H D DD SD E HR K+ D + AT ++ +++ DW S Sbjct: 332 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDWSS 384
>RIC8A_BRARE (Q642H7) Synembryn-A (Protein Ric-8A)| Length = 548 Score = 30.0 bits (66), Expect = 2.8 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = +2 Query: 224 GGRDVSKNRYLHREDSDDSDTESHRV----IRSLKDKRNDEMKATADQMRNAMKINDWLS 391 GGRD H + +DSDTE +R I + + +E + M + K + + Sbjct: 440 GGRDPG-----HYSEDEDSDTEEYREAKPHINPVTGRVEEEQPNPMEGMTDEQKEYEAMK 494 Query: 392 LQESFDKLNKQ 424 L FDKL+++ Sbjct: 495 LVNMFDKLSRE 505
>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of| polyhomeotic 3) (Early development regulatory protein 3) Length = 983 Score = 30.0 bits (66), Expect = 2.8 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -1 Query: 338 SSHHCACPST-SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQS-RPP 165 S H P++ S S + + PL++ +HH Q + + L S + P Sbjct: 287 SIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDP 346 Query: 164 PPQSHCLPVPKNEMP 120 PP HC+P+ + +P Sbjct: 347 PPSQHCIPLQNHGLP 361
>RAD50_RAT (Q9JIL8) DNA repair protein RAD50 (EC 3.6.-.-)| Length = 1312 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Frame = +2 Query: 284 TESHRVIRSLKDKRNDEMKATADQMRNAMKINDWL--------SLQESFDKLNKQL 427 T+ IR +K + +DE+ + N ++ DWL ++ KLNK+L Sbjct: 546 TDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL 601
>RAD50_MOUSE (P70388) DNA repair protein RAD50 (EC 3.6.-.-) (mRad50)| Length = 1312 Score = 29.3 bits (64), Expect = 4.7 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Frame = +2 Query: 284 TESHRVIRSLKDKRNDEMKATADQMRNAMKINDWL--------SLQESFDKLNKQL 427 T+ IR +K + +DE+ + N ++ DWL ++ KLNK+L Sbjct: 546 TDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL 601
>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)| Length = 129 Score = 29.3 bits (64), Expect = 4.7 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -1 Query: 338 SSHHCACP-STSESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPP 162 SSH C S S+S SQ + H +++SG + PH L H + + PP Sbjct: 32 SSHCQTCSQSCSQSRSSSQSPTGH---HSSSGHQSQ-SPHPTLPPRHQKHTRHSHHCPPR 87 Query: 161 PQSHCLPVPKN 129 P +H PKN Sbjct: 88 PTTHSCSYPKN 98
>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox| protein NK-1) Length = 659 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Frame = -1 Query: 287 QYQSRHCPLYANSGSWTHHDPH-----HQLLIFHYRSLVLTQSRPPPPQSHCLPVP 135 Q+Q P + +S H PH H +FH R+ + + PP P + L P Sbjct: 206 QHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPP 261
>DBP4_GIBZE (Q4IAS1) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-)| Length = 793 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/59 (27%), Positives = 30/59 (50%) Frame = +2 Query: 266 DSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVR 442 D DD+D + + + R+D++ A ++ KI D L +E F +K+ EK ++ Sbjct: 557 DGDDNDDDEEDFLSVKRVLRDDDLDDEAGAYKSTAKIIDGLGGEEPFVVDSKRREKALK 615
>PARP1_BOVIN (P18493) Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1)| (ADPRT) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) Length = 1015 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%) Frame = +2 Query: 320 KRNDEMKATADQMRN-----AMKINDWLSLQESFDKLNKQLEKVVRVN 448 + DE+KAT +++ A K + +S ++ DKLNK++E+V N Sbjct: 404 QNKDEVKATIEKLGGKLTGTANKASLCISTKKEVDKLNKKMEEVKEAN 451
>RRP3_ASPFU (Q4WJE9) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)| Length = 472 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +2 Query: 230 RDVSKNRYLHR---EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 373 RDV K + H SD T SH+ + D + +ATA + R A K Sbjct: 2 RDVKKRKIAHEAPEHGSDTESTSSHKSVAQQDDPLETQDEATATESRPAPK 52
>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor| (IRBP) (Interstitial retinol-binding protein) Length = 1247 Score = 28.9 bits (63), Expect = 6.2 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -1 Query: 221 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 99 H+LL+FH ++ + PPPP + +P P+ E+ +L+ F Sbjct: 697 HRLLVFHSPGELVVEEAPPPPPA--VPSPE-ELTYLIEALF 734
>IF2A_HALSA (Q9HRT8) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 267 Score = 28.9 bits (63), Expect = 6.2 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = +2 Query: 281 DTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKV 436 D + ++ SLKD + + T + +N K + WL+L D + Q ++ Sbjct: 70 DESAQQIDLSLKDVNDHQHSDTIQEWKNEQKADKWLTLAFGEDMADDQFRRI 121
>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor| Length = 226 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 10/52 (19%) Frame = -1 Query: 260 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 135 Y + G W HH P H L H+ V +P PQ +PVP Sbjct: 69 YESMGGWVHHQVIPVLSQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVP 120
>Y564_TREPA (O83575) Hypothetical protein TP0564| Length = 678 Score = 28.9 bits (63), Expect = 6.2 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%) Frame = -1 Query: 335 SHHCACPSTSESHDGSQYQSRHCPL-------YANSGSWTHHDPHHQLLI-FHYRSLVLT 180 +H CP S H P+ + W H DP H L I H ++ + Sbjct: 125 AHRTVCPPWLLQAVYQHLTSHHVPIRYRDFDAILHRLGWLHEDPRHALYIKEHIPAVRME 184 Query: 179 QSRPPPPQSHCLP 141 S PP H LP Sbjct: 185 NSLYPPGALHTLP 197
>CASB_BOVIN (P02666) Beta-casein precursor| Length = 224 Score = 28.9 bits (63), Expect = 6.2 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -1 Query: 308 SESHDGSQYQSRHCPLYANSGSWTH--HDPHHQLLIFHYRSLV-LTQSRPPPPQSHCLPV 138 S+S + ++ H PL SW H H P ++F +S++ L+QS+ P +P Sbjct: 137 SQSLTLTDVENLHLPLPLLQ-SWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPY 195 Query: 137 PKNEMPWLLFVCF 99 P+ +MP F+ + Sbjct: 196 PQRDMPIQAFLLY 208
>RAD50_HUMAN (Q92878) DNA repair protein RAD50 (EC 3.6.-.-) (hRAD50)| Length = 1312 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%) Frame = +2 Query: 263 EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWL--------SLQESFDKLN 418 +D D D + IR +K + +DE+ + N ++ DWL ++ KLN Sbjct: 543 KDKADKDEQ----IRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLN 598 Query: 419 KQL 427 K+L Sbjct: 599 KEL 601
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/45 (35%), Positives = 18/45 (40%) Frame = -1 Query: 254 NSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMP 120 NS HH HH H+ Q PPPPQ P P + P Sbjct: 41 NSHHPQHHHHHHH---HHHPPPPAPQPPPPPPQQQQQPPPAPQPP 82
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.5 bits (62), Expect = 8.1 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Frame = -1 Query: 338 SSHHCACPSTSESHDGSQYQSRHCPLYANSG-----SWTHHDPHHQLLIFHYRSLVLTQS 174 SS S S S D ++ P G HH HHQ + + Q Sbjct: 699 SSSESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQM--QQAPAPVPQQ 756 Query: 173 RPPPPQSHCLPVPKNE 126 PPPPQ P P + Sbjct: 757 PPPPPQQPPPPPPPQQ 772
>SSRP_MYCLE (O32881) SsrA-binding protein| Length = 160 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = -1 Query: 281 QSRHCPLYANSGSWTHHDP-HHQLLIFHYRSL 189 ++ H P Y + GSWT+HDP ++ L+ H R + Sbjct: 64 RNMHIPEYQH-GSWTNHDPRRNRKLLLHRRQI 94
>GAT1_YEAST (P43574) Transcriptional regulatory protein GAT1| Length = 510 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = +2 Query: 263 EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWL--SLQESFD 409 +D DD D E+H ++ S D ND A+ NA ++L S SFD Sbjct: 152 DDDDDDDVETHSIVHS--DLLNDMDSASQRASHNASGFPNFLDTSCSSSFD 200
>YOW5_CAEEL (P30651) Hypothetical protein ZK643.5| Length = 487 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Frame = +2 Query: 197 DSEKSEAGDGGRDVSKNRYLHREDSDDSD--TESHRVIRSLKDKRNDEMKATADQMRNAM 370 D + EAGD + K + E+ DD D + R K R D ++ ++ N Sbjct: 68 DENEDEAGDDELESEKEELDYDEEEDDEDRRERTSRYTSEKKGSRKDSVEGDENKKENGQ 127 Query: 371 KINDWLSLQESFDK 412 + FDK Sbjct: 128 DETKRSGIPSLFDK 141
>ERF1_DILMA (Q5CD96) Eukaryotic peptide chain release factor subunit 1 (eRF1)| (Eukaryotic release factor 1) Length = 436 Score = 28.5 bits (62), Expect = 8.1 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Frame = +2 Query: 203 EKSEAGDGGRDVSKNRY---LHREDS-DDSDTESHRVIRSLKDKRNDEMKATADQMRNAM 370 +K E + R V R +H+ D+ S T +I + KD+ N MK D++ A Sbjct: 3 DKDEDAEYERSVEMFRLKKLIHKLDNLKGSGTSMISLIINYKDQINPFMKMLVDEVGKAS 62 Query: 371 KINDWLSLQESFDKLNKQLEKVVRVN 448 I ++ Q D L +EK+ N Sbjct: 63 NIKSRVTRQNVTDALTSTMEKLKLYN 88
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = +2 Query: 197 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 376 D ++ E+ S+ R +SD+SD E R K K + + K + + R Sbjct: 68 DDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSS 127 Query: 377 NDWLSLQESFDKLNKQLEK 433 D S +E K K+ +K Sbjct: 128 EDEDSDEEREQKSKKKSKK 146
>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 629 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/60 (25%), Positives = 33/60 (55%) Frame = +2 Query: 266 DSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWLSLQESFDKLNKQLEKVVRV 445 D DD + S+ + +D+ ++E ++T+D + I+ ++ +E F +L +Q K + V Sbjct: 192 DEDDEEESSNADVEDNEDEEDNESESTSDSSDSDNSIDPEVA-REKFQQLREQHSKTLAV 250 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,036,905 Number of Sequences: 219361 Number of extensions: 951054 Number of successful extensions: 4864 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4836 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
