ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40e09 |
|---|---|
| Clone Library Name | barley_pub |
>CR1FA_BACTA (Q03746) Pesticidal crystal protein cry1Fa (Insecticidal| delta-endotoxin CryIF(a)) (Crystaline entomocidal protoxin) (134 kDa crystal protein) Length = 1174 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +2 Query: 323 DPRPRSRALGDPLLL-GPFGAPHLLVGV 403 DPRP R L DP+ + G FG PH ++G+ Sbjct: 351 DPRPFYRTLSDPVFVRGGFGNPHYVLGL 378
>CR1FB_BACTM (O66377) Pesticidal crystal protein cry1Fb (Insecticidal| delta-endotoxin CryIF(b)) (Crystaline entomocidal protoxin) (132 kDa crystal protein) Length = 1169 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = +2 Query: 323 DPRPRSRALGDPLLL-GPFGAPHLLVGV 403 DPRP R L DP+ + G FG PH ++G+ Sbjct: 351 DPRPFYRTLSDPVFVRGGFGNPHYVLGL 378
>ATS19_MOUSE (P59509) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 19) (ADAM-TS 19) (ADAM-TS19) Length = 1210 Score = 30.4 bits (67), Expect = 1.7 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = +3 Query: 279 CAAGVCARRQPSLPWTPVHAAGLWATPCSSDRSAPPTCSS 398 C AG C RR P+ P H AG W+ S RS SS Sbjct: 623 CKAGECTRRTPA----PEHLAGEWSPWSSCSRSCSSGVSS 658
>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Glial factor 1) (GF-1) Length = 993 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -1 Query: 400 SDEQVGGAERSEEQGVAQSPAAWTGVQGREGWRRAHTPAAQGGRKPVAREM 248 S E G+ + + + + TG Q +EG + A PA QG +KP + + Sbjct: 652 SHENSQGSSHAATKPQGPATSTRTGSQRQEGGQEAAAPARQGRKKPAGKSL 702
>SYE_METKA (Q8TXB7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 571 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +1 Query: 19 GERLVSLHPRNPIARSLLSG 78 GER++ LHP N +AR+LL G Sbjct: 439 GERVLILHPENGVARALLDG 458
>TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 homolog| (Intermediate chain 1) Length = 837 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 18/63 (28%) Frame = -1 Query: 385 GGAERSE------EQGVAQSPAAWTGVQGREGW------------RRAHTPAAQGGRKPV 260 GG E++E E+ A+ PAA +G Q EG ++A P A+GG KP Sbjct: 654 GGEEQTEQPAGEGEEQQAEQPAAESGEQQAEGGEPATETATEGGEQQAEQPPAEGGEKPA 713 Query: 259 ARE 251 E Sbjct: 714 EEE 716
>YPC2_ECOLI (P18128) Hypothetical 26.4 kDa protein (ORF 245)| Length = 245 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 5/32 (15%) Frame = +3 Query: 264 GFRPPCAAGVCARRQPSLP-----WTPVHAAG 344 G RPPC A V P+LP W H AG Sbjct: 76 GIRPPCRAPVLCGNPPTLPGAGAVWESAHLAG 107
>PLDP2_ARATH (Q9M9W8) Phospholipase D p2 (EC 3.1.4.4) (AtPLDp2) (Phospholipase| D2 PHOX and PX containing domain) (Phospholipase D zeta 2) (PLDzeta2) Length = 1046 Score = 28.9 bits (63), Expect = 5.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +3 Query: 300 RRQPSLPWTPVHAAGLWATPC 362 R+ P +PW VH A LW PC Sbjct: 542 RKYPRMPWHDVHCA-LWGPPC 561
>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) Length = 2254 Score = 28.9 bits (63), Expect = 5.0 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 4/27 (14%) Frame = +3 Query: 240 PRSIS----RATGFRPPCAAGVCARRQ 308 P SIS + G RPPC+ GVC RR+ Sbjct: 2185 PPSISIDPPESQGSRPPCSPGVCLRRR 2211
>JPH2_MOUSE (Q9ET78) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -1 Query: 346 SPAAWTGVQGREGWRRAHTPAAQGGRKPVAR 254 SP +W G G EG R A TP+ GR+ AR Sbjct: 501 SPGSWNGEPGGEGSRPA-TPSDGAGRRSPAR 530
>PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC| 3.6.1.-) Length = 1211 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 337 AWTGVQGREGWRRAHTPAAQGGRKPVAREMDRGTG 233 AW Q E R+ AA GG + + E+DR +G Sbjct: 178 AWKQKQAAERERKQREAAAAGGARSILEEIDRKSG 212
>HOX3_XENLA (P50476) Homeobox protein XHOX-3| Length = 388 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 291 VCARRQPSLPWTPVHAAGLWATPCS 365 +CA R PS+ +P H G +PCS Sbjct: 306 LCAFRHPSIYASPAHGLGSGGSPCS 330
>PLDP1_ARATH (Q9LRZ5) Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase| D1 PHOX and PX containing domain) (Phospholipase D zeta 1) (PLDzeta1) Length = 1096 Score = 28.1 bits (61), Expect = 8.6 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +3 Query: 300 RRQPSLPWTPVHAAGLWATPC 362 ++ P +PW VH A LW PC Sbjct: 547 KKHPRMPWHDVHCA-LWGPPC 566 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,119,484 Number of Sequences: 219361 Number of extensions: 508417 Number of successful extensions: 2145 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2054 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2143 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
