ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl40e08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483606.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3172 Score = 125 bits (63), Expect = 1e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 281 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcaccaatggc 340 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 299 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctccaatggc 358 Query: 341 gccgaggatgccgcggagc 359 ||||| ||| ||| ||||| Sbjct: 359 gccgacgatcccggggagc 377
>dbj|AK066525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072L17, full insert sequence Length = 3173 Score = 125 bits (63), Expect = 1e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 281 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcaccaatggc 340 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 299 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctccaatggc 358 Query: 341 gccgaggatgccgcggagc 359 ||||| ||| ||| ||||| Sbjct: 359 gccgacgatcccggggagc 377
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 2e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 281 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcaccaatggc 340 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 27209477 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctccaatggc 27209418 Query: 341 gccga 345 ||||| Sbjct: 27209417 gccga 27209413
>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1521_G02 Length = 117964 Score = 121 bits (61), Expect = 2e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 281 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcaccaatggc 340 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 110510 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctccaatggc 110451 Query: 341 gccga 345 ||||| Sbjct: 110450 gccga 110446
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0623F08 Length = 154540 Score = 121 bits (61), Expect = 2e-24 Identities = 64/65 (98%) Strand = Plus / Minus Query: 281 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcaccaatggc 340 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 32680 gccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgctccaatggc 32621 Query: 341 gccga 345 ||||| Sbjct: 32620 gccga 32616
>gb|AY111306.1| Zea mays CL10099_1 mRNA sequence Length = 649 Score = 115 bits (58), Expect = 1e-22 Identities = 138/165 (83%) Strand = Plus / Plus Query: 277 ggaggccgcggcggcgcgcaaggagtggcgcgccgtccccgacgccccgctccgcaccaa 336 |||| |||||| |||||||||||||||||||||| ||||||| || |||||||| |||| Sbjct: 242 ggagcccgcgggcgcgcgcaaggagtggcgcgccgnccccgactcctcgctccgctccaa 301 Query: 337 tggcgccgaggatgccgcggagcgcatgaagatggcgcagtccgagggcagggccatcta 396 ||||||||||||||||||||||| | |||| ||| |||||| |||| | || ||||| Sbjct: 302 tggcgccgaggatgccgcggagcacgggaagctggggcagtcggaggaacgagctatcta 361 Query: 397 ccaggatgagtcgggagggctggacgacttctgctcgatcaccat 441 | |||| | | |||| || ||||| ||||||||| | |||||||| Sbjct: 362 cgaggaaggggcgggtggactggaggacttctgcgccatcaccat 406
>gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8q24.3 , complete sequence Length = 134215 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tccccccatcggcctccagcc 156 ||||||||||||||||||||| Sbjct: 120748 tccccccatcggcctccagcc 120768
>gb|AF235100.4| Homo sapiens chromosome 8 clone RP11-98A24 map 8q24.3 , complete sequence Length = 129619 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tccccccatcggcctccagcc 156 ||||||||||||||||||||| Sbjct: 17626 tccccccatcggcctccagcc 17646
>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence Length = 223552 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 ggcatcccgccgcctcctctc 46 ||||||||||||||||||||| Sbjct: 113989 ggcatcccgccgcctcctctc 114009
>emb|Y18319.1|SLAP18319 Homo sapiens SLAP gene, clone SEQ.A1 Length = 2939 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 tccccccatcggcctccagcc 156 ||||||||||||||||||||| Sbjct: 842 tccccccatcggcctccagcc 822
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 acggaggccgcggcggcgcg 294 |||||||||||||||||||| Sbjct: 8454 acggaggccgcggcggcgcg 8435
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 acggaggccgcggcggcgcg 294 |||||||||||||||||||| Sbjct: 47681 acggaggccgcggcggcgcg 47662
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ccatcggcctccagccggcg 160 |||||||||||||||||||| Sbjct: 831695 ccatcggcctccagccggcg 831676
>ref|XM_366100.1| Magnaporthe grisea 70-15 hypothetical protein (MG10320.4) partial mRNA Length = 2169 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gcatcccgccgcctcctctc 46 |||||||||||||||||||| Sbjct: 46 gcatcccgccgcctcctctc 65
>gb|AY650399.1| Homo sapiens cell division cycle 34 (CDC34) gene, complete cds Length = 14358 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 tggcgcagtccgagggcagggcca 392 |||| ||||||||||||||||||| Sbjct: 563 tggcacagtccgagggcagggcca 586
>gb|AC130551.4| Mus musculus BAC clone RP24-538J2 from chromosome 9, complete sequence Length = 189707 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccctagcccctccccccatc 145 |||||||||||||||||||| Sbjct: 188108 ccctagcccctccccccatc 188127
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atcggcctccagccggcgct 162 |||||||||||||||||||| Sbjct: 119368 atcggcctccagccggcgct 119349
>gb|AC100550.7| Mus musculus chromosome 9, clone RP23-152P11, complete sequence Length = 188119 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 ccctagcccctccccccatc 145 |||||||||||||||||||| Sbjct: 8133 ccctagcccctccccccatc 8152
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ccatcggcctccagccggcg 160 |||||||||||||||||||| Sbjct: 145232 ccatcggcctccagccggcg 145213
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ccatcggcctccagccggcg 160 |||||||||||||||||||| Sbjct: 164327 ccatcggcctccagccggcg 164308
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 atggcgccgaggatgccgcg 355 |||||||||||||||||||| Sbjct: 2772107 atggcgccgaggatgccgcg 2772126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 cggaggccgcggcggcgcgc 295 |||||||||||||||||||| Sbjct: 435310 cggaggccgcggcggcgcgc 435291
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 agccccgccgccagatcccg 229 |||||||||||||||||||| Sbjct: 1991878 agccccgccgccagatcccg 1991859
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 acggaggccgcggcggcgcg 294 |||||||||||||||||||| Sbjct: 21454598 acggaggccgcggcggcgcg 21454579
>gb|AC011531.7|AC011531 Homo sapiens chromosome 19 clone LLNLR-231G5, complete sequence Length = 36377 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 tggcgcagtccgagggcagggcca 392 |||| ||||||||||||||||||| Sbjct: 19784 tggcacagtccgagggcagggcca 19807
>gb|U77912.1|MBU77912 Mycobacterium bovis MBE50a gene, partial cds; and MBE50b, MBE50c, preprotein translocase SecY subunit (secY), adenylate kinase (adk), methionine aminopeptidase (map), RNA polymerase ECF sigma factor (sigE50), MBE50d, and MBE50e genes, complete cds Length = 7163 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ccatcggcctccagccggcg 160 |||||||||||||||||||| Sbjct: 6961 ccatcggcctccagccggcg 6942
>gb|AF478411.1| Chlamydomonas reinhardtii iron transporter Ftr1 (FTR1) mRNA, complete cds Length = 2833 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cggcctccagccggcgcttc 164 |||||||||||||||||||| Sbjct: 619 cggcctccagccggcgcttc 600 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,462,625 Number of Sequences: 3902068 Number of extensions: 2462625 Number of successful extensions: 55501 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55058 Number of HSP's gapped (non-prelim): 443 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
