ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TR140_MOUSE (Q7TQA4) Taste receptor type 2 member 140 (T2R140) (... 32 0.78
2MYCB_XENLA (P15171) Myc-B protein (Myc II protein) (C-Myc II) 32 1.0
3SEC7_YEAST (P11075) Protein transport protein SEC7 30 2.3
4MYC1_XENLA (P06171) Myc-A protein (Myc I protein) (C-Myc I) 30 2.9
5VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B) 29 6.6
6ASPG_DIRIM (Q9U518) L-asparaginase (EC 3.5.1.1) (L-asparagine am... 29 6.6
7PMP12_CHLPN (Q9Z3D6) Probable outer membrane protein pmp12 precu... 29 6.6
8XERD_LISMO (Q8Y5V0) Tyrosine recombinase xerD 28 8.6
9XERD_LISIN (Q92A53) Tyrosine recombinase xerD 28 8.6
10UBID_ECO57 (P58194) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase... 28 8.6

>TR140_MOUSE (Q7TQA4) Taste receptor type 2 member 140 (T2R140) (T2R40) (T2R8)|
           (T2R13) (mT2r64) (Taste receptor family B member 3)
           (mTRB3) (mTRB5)
          Length = 312

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = +3

Query: 75  QIWLLISLQELGIL*AIL-VMFLHFLES*LTKEKLVLVIYNQNW--VSHLNPWKLLLCL 242
           QI+  +++  L  + ++L V+F   L S L   + VL+I+N +W  ++H N W L  CL
Sbjct: 46  QIFTALAISRLAFVWSLLTVLFTSELYSALMTTRKVLIIFNNSWTVINHFNIW-LATCL 103



to top

>MYCB_XENLA (P15171) Myc-B protein (Myc II protein) (C-Myc II)|
          Length = 420

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 252 VDVSGTRAASKDSDERPSSDCISPILTFPWSISFLRNVETSP 127
           +++ GT  +S +  + PSSDC+ P + FP+ ++   +  +SP
Sbjct: 165 LNLGGTNRSSHEFLQDPSSDCVDPSVVFPYPLNDSISNASSP 206



to top

>SEC7_YEAST (P11075) Protein transport protein SEC7|
          Length = 2009

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +3

Query: 36   VLSEAWKVNKFNA----QIWLLISLQELGIL*AILVMFLHFLES 155
            VLS+ W+VN+FN+     +WL  +L  +  L  ++ +F H+ ES
Sbjct: 1592 VLSKHWEVNQFNSHDDLSVWLSTTL--IQALRNLIALFTHYFES 1633



to top

>MYC1_XENLA (P06171) Myc-A protein (Myc I protein) (C-Myc I)|
          Length = 419

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 252 VDVSGTRAASKDSDERPSSDCISPILTFPWSISFLRNVETSP 127
           + + GT  +S    + PSSDC+ P + FP+ ++   +  +SP
Sbjct: 166 LSLGGTHRSSHGFLQDPSSDCVDPSVVFPYPLNDSISNASSP 207



to top

>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)|
          Length = 588

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 458 HLENNDQMKKCLPQVLSQVVNQLRSYFHFYPMDLPVPQNPLLEISLE 318
           +L N D  +K +  VL + VN  R +  F+P     PQ+ L   S E
Sbjct: 280 YLANQDNKEKLIIAVLHRPVNNPRQFEEFFPAGSQRPQSYLRAFSRE 326



to top

>ASPG_DIRIM (Q9U518) L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase)|
           (DiAsp)
          Length = 590

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 83  VVDQSTGAGNLVSNSGDVSTFLRKLIDQGKVSI 181
           VV Q+ GAGN+ S+  D+   L+K +D+G + I
Sbjct: 264 VVLQTFGAGNMPSHRTDIIDELKKAVDRGCIII 296



to top

>PMP12_CHLPN (Q9Z3D6) Probable outer membrane protein pmp12 precursor|
           (Polymorphic membrane protein 12) (Outer membrane
           protein 13)
          Length = 514

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +2

Query: 290 LQNSIHVPP-VQVKSLK---EGSVAPEGPLDRSESKNVTDLQL----GSELEEGISSF 439
           + NSIH+    Q K+L+   E  V    P+  SES  +TDL +    G E  EG  SF
Sbjct: 264 IHNSIHLQSGAQFKNLRAVSESGVYFYDPISHSESHKITDLVINAPEGKETYEGTISF 321



to top

>XERD_LISMO (Q8Y5V0) Tyrosine recombinase xerD|
          Length = 297

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -3

Query: 422 PQVLSQVVNQLRSYFHFYPMDLPVPQNPLLEISLEQEAR 306
           P+ +++ +  LRS+FH+   D  +  +P+++I   ++A+
Sbjct: 68  PRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQ 106



to top

>XERD_LISIN (Q92A53) Tyrosine recombinase xerD|
          Length = 297

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -3

Query: 422 PQVLSQVVNQLRSYFHFYPMDLPVPQNPLLEISLEQEAR 306
           P+ +++ +  LRS+FH+   D  +  +P+++I   ++A+
Sbjct: 68  PRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQ 106



to top

>UBID_ECO57 (P58194) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)|
           (Polyprenyl p-hydroxybenzoate decarboxylase)
          Length = 497

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 263 GLKLKIIKLLQNSIHVPP----VQVKSLKEGSVAPEGP 364
           G K +++K + N + VP     V    +++G +APEGP
Sbjct: 250 GTKTEVVKCISNDLEVPASAEIVLEGYIEQGEMAPEGP 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,169,730
Number of Sequences: 219361
Number of extensions: 1180756
Number of successful extensions: 3442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3440
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top