ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 6e-65
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
3dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se... 46 0.10
8gb|AC023245.5|AC023245 Homo sapiens chromosome 8, clone RP11-25D... 44 0.40
9emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chr... 42 1.6
10gb|AC016157.2|AC016157 Drosophila melanogaster, chromosome 3R, r... 42 1.6
11gb|AC007645.4|AC007645 Drosophila melanogaster, chromosome 3R, r... 42 1.6
12gb|AE003689.2| Drosophila melanogaster chromosome 3R, section 27... 42 1.6
13gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, co... 40 6.2
14gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete... 40 6.2
15gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, compl... 40 6.2
16gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, comp... 40 6.2
17gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, comple... 40 6.2
18gb|AC110530.10| Mus musculus chromosome 9, clone RP23-414K12, co... 40 6.2
19gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosom... 40 6.2
20emb|AL929028.29| Zebrafish DNA sequence from clone CH211-13F6 in... 40 6.2
21gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequ... 40 6.2
22emb|AJ632322.1| Cotesia congregata virus complete genome, segmen... 40 6.2
23gb|AC110760.3| Homo sapiens BAC clone RP11-44F21 from 4, complet... 40 6.2
24gb|U40420.1| Caenorhabditis elegans cosmid F40F4, complete sequence 40 6.2
25gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome ... 40 6.2
26gb|AC154804.2| Mus musculus BAC clone RP24-506H9 from chromosome... 40 6.2
27gb|AY910577.1| Homo sapiens ATP-binding cassette, sub-family B (... 40 6.2
28emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 40 6.2

>dbj|AK066363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064D24, full
           insert sequence
          Length = 1655

 Score =  256 bits (129), Expect = 6e-65
 Identities = 291/345 (84%)
 Strand = Plus / Plus

                                                                       
Query: 112 tcttgtgagcaattctggtgatgtttctacatttcttagaaagctaattgaccaaggaaa 171
           |||||||||||| || |||||||| ||||||  |||||||||||||||||||||||||| 
Sbjct: 619 tcttgtgagcaactcgggtgatgtctctacagctcttagaaagctaattgaccaaggaat 678

                                                                       
Query: 172 agttagtattggtgatatacaatcagaactgggtctctcatctgaatccttggaagctgc 231
            |||| | ||||||||||| |||||||| ||||| | || || ||||| |||||||||||
Sbjct: 679 ggttaatgttggtgatatagaatcagaattgggtgtgtcttcagaatctttggaagctgc 738

                                                                       
Query: 232 tcttgtgcctgaaacatcgaccttctcccctggtctgaagttgaaaatcatcaagttgct 291
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 739 tctcgtgcctgaaacatcgaccttctcccctggtctgaagttgaaaataatcaagttact 798

                                                                       
Query: 292 gcaaaactctattcacgtgcctcctgttcaagtgaaatctctaaaagagggttctgtggc 351
           ||||||| | ||||  || ||| ||||||||| ||| | |   |||||||||||| ||||
Sbjct: 799 gcaaaacaccattcgtgtaccttctgttcaagagaagtgttctaaagagggttctttggc 858

                                                                       
Query: 352 accggaaggtccattggatagaagtgaaagtaagaacgtaactgatttacaacttggctc 411
           ||   ||||| |  ||  || | |||| ||||||| | ||||||||  |||| || ||||
Sbjct: 859 actacaaggtactgtgtttacaggtgagagtaagagcttaactgatacacaaatttgctc 918

                                                        
Query: 412 agaacttgaggaaggcatttcttcatttgatcattgttttccaga 456
           |||||| ||||||||||| ||||| ||||||||||| | ||||||
Sbjct: 919 agaactggaggaaggcatctcttcgtttgatcattgctgtccaga 963



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                           
Query: 238     gcctgaaacatcgaccttctcccctggtctgaagttgaaaatcatcaagttgctgcaaaa 297
               |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 5592332 gcctgaaacatcgaccttctcccctggtctgaagttgaaaataatcaagttactgcaaaa 5592273

                                                                       
Query: 298     ctctattcacgtgcctcctgttcaagtgaaatctctaaaagagggttctgtggcac 353
               | | ||||  || ||| ||||||||| ||| | |   |||||||||||| ||||||
Sbjct: 5592272 caccattcgtgtaccttctgttcaagagaagtgttctaaagagggttctttggcac 5592217



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 153     agctaattgaccaaggaaaagttagtattggtgatatacaatcagaactgggtctctcat 212
               ||||||||||||||||||  |||| | ||||||||||| |||||||| ||||| | || |
Sbjct: 5592923 agctaattgaccaaggaatggttaatgttggtgatatagaatcagaattgggtgtgtctt 5592864

                                     
Query: 213     ctgaatccttggaagctgctct 234
               | ||||| ||||||||||||||
Sbjct: 5592863 cagaatctttggaagctgctct 5592842



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                           
Query: 375     gtgaaagtaagaacgtaactgatttacaacttggctcagaacttgaggaaggcatttctt 434
               |||| ||||||| | ||||||||  |||| || |||||||||| ||||||||||| ||||
Sbjct: 5591014 gtgagagtaagagcttaactgatacacaaatttgctcagaactggaggaaggcatctctt 5590955

                                     
Query: 435     catttgatcattgttttccaga 456
               | ||||||||||| | ||||||
Sbjct: 5590954 cgtttgatcattgctgtccaga 5590933



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 112     tcttgtgagcaattctggtgatgtttctacatttcttagaaag 154
               |||||||||||| || |||||||| ||||||  ||||||||||
Sbjct: 5593045 tcttgtgagcaactcgggtgatgtctctacagctcttagaaag 5593003



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>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score =  111 bits (56), Expect = 2e-21
 Identities = 101/116 (87%)
 Strand = Plus / Minus

                                                                          
Query: 238    gcctgaaacatcgaccttctcccctggtctgaagttgaaaatcatcaagttgctgcaaaa 297
              |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 139240 gcctgaaacatcgaccttctcccctggtctgaagttgaaaataatcaagttactgcaaaa 139181

                                                                      
Query: 298    ctctattcacgtgcctcctgttcaagtgaaatctctaaaagagggttctgtggcac 353
              | | ||||  || ||| ||||||||| ||| | |   |||||||||||| ||||||
Sbjct: 139180 caccattcgtgtaccttctgttcaagagaagtgttctaaagagggttctttggcac 139125



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                          
Query: 153    agctaattgaccaaggaaaagttagtattggtgatatacaatcagaactgggtctctcat 212
              ||||||||||||||||||  |||| | ||||||||||| |||||||| ||||| | || |
Sbjct: 139831 agctaattgaccaaggaatggttaatgttggtgatatagaatcagaattgggtgtgtctt 139772

                                    
Query: 213    ctgaatccttggaagctgctct 234
              | ||||| ||||||||||||||
Sbjct: 139771 cagaatctttggaagctgctct 139750



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                          
Query: 375    gtgaaagtaagaacgtaactgatttacaacttggctcagaacttgaggaaggcatttctt 434
              |||| ||||||| | ||||||||  |||| || |||||||||| ||||||||||| ||||
Sbjct: 137922 gtgagagtaagagcttaactgatacacaaatttgctcagaactggaggaaggcatctctt 137863

                                    
Query: 435    catttgatcattgttttccaga 456
              | ||||||||||| | ||||||
Sbjct: 137862 cgtttgatcattgctgtccaga 137841



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 112    tcttgtgagcaattctggtgatgtttctacatttcttagaaag 154
              |||||||||||| || |||||||| ||||||  ||||||||||
Sbjct: 139953 tcttgtgagcaactcgggtgatgtctctacagctcttagaaag 139911



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                            
Query: 153      agctaattgaccaaggaaaagttagtattggtgatatacaatcagaactgggtctctcat 212
                |||||||||| |||||||| |||||| |||||||| ||  ||| ||| ||||| | || |
Sbjct: 32407172 agctaattgatcaaggaaaggttagtgttggtgatgtagcatctgaagtgggtatttctt 32407231

                                          
Query: 213      ctgaatccttggaagctgctcttgtg 238
                | ||||| ||||||||||||||||||
Sbjct: 32407232 cagaatctttggaagctgctcttgtg 32407257



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>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1767_D02
          Length = 139145

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                         
Query: 153   agctaattgaccaaggaaaagttagtattggtgatatacaatcagaactgggtctctcat 212
             |||||||||| |||||||| |||||| |||||||| ||  ||| ||| ||||| | || |
Sbjct: 68685 agctaattgatcaaggaaaggttagtgttggtgatgtagcatctgaagtgggtatttctt 68744

                                       
Query: 213   ctgaatccttggaagctgctcttgtg 238
             | ||||| ||||||||||||||||||
Sbjct: 68745 cagaatctttggaagctgctcttgtg 68770



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>dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1079_F11
          Length = 122402

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                         
Query: 153   agctaattgaccaaggaaaagttagtattggtgatatacaatcagaactgggtctctcat 212
             |||||||||| |||||||| |||||| |||||||| ||  ||| ||| ||||| | || |
Sbjct: 10565 agctaattgatcaaggaaaggttagtgttggtgatgtagcatctgaagtgggtatttctt 10624

                                       
Query: 213   ctgaatccttggaagctgctcttgtg 238
             | ||||| ||||||||||||||||||
Sbjct: 10625 cagaatctttggaagctgctcttgtg 10650



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>gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete sequence
          Length = 165682

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 288    tgctgcaaaactctattcacgtg 310
              |||||||||||||||||||||||
Sbjct: 155713 tgctgcaaaactctattcacgtg 155691



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>gb|AC023245.5|AC023245 Homo sapiens chromosome 8, clone RP11-25D10, complete sequence
          Length = 175205

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 433   ttcatttgatcattgttttcca 454
             ||||||||||||||||||||||
Sbjct: 87640 ttcatttgatcattgttttcca 87661



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>emb|AL357894.6| Human DNA sequence from clone RP11-576P23 on chromosome Xp11.21-11.23
              Contains a novel gene and a CpG island, complete sequence
          Length = 154847

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    caaggaaaagttagtattggt 184
              |||||||||||||||||||||
Sbjct: 147954 caaggaaaagttagtattggt 147974



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>gb|AC016157.2|AC016157 Drosophila melanogaster, chromosome 3R, region 86C-86D, BAC clone
              BACR48M22, complete sequence
          Length = 161549

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    tcaagttgctgcaaaactcta 302
              |||||||||||||||||||||
Sbjct: 148227 tcaagttgctgcaaaactcta 148207



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>gb|AC007645.4|AC007645 Drosophila melanogaster, chromosome 3R, region 86C-86D, BAC clone
             BACR04L09, complete sequence
          Length = 165136

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   tcaagttgctgcaaaactcta 302
             |||||||||||||||||||||
Sbjct: 66820 tcaagttgctgcaaaactcta 66800



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>gb|AE003689.2| Drosophila melanogaster chromosome 3R, section 27 of 118 of the complete
              sequence
          Length = 215899

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    tcaagttgctgcaaaactcta 302
              |||||||||||||||||||||
Sbjct: 159314 tcaagttgctgcaaaactcta 159294



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>gb|AC121121.13| Mus musculus chromosome 9, clone RP23-401G21, complete sequence
          Length = 226672

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   gaggaaggcatttcttcatt 438
             ||||||||||||||||||||
Sbjct: 57115 gaggaaggcatttcttcatt 57096



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>gb|AC002457.2| Homo sapiens BAC clone CTB-60P12 from 7, complete sequence
          Length = 177380

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    gtgatgtttctacatttctt 148
              ||||||||||||||||||||
Sbjct: 136352 gtgatgtttctacatttctt 136371



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>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 122    aattctggtgatgtttctacatttctta 149
              ||||||| |||||||| |||||||||||
Sbjct: 132880 aattctgttgatgtttttacatttctta 132853



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>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence
          Length = 155731

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   gtgatgtttctacatttctt 148
             ||||||||||||||||||||
Sbjct: 93507 gtgatgtttctacatttctt 93488



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>gb|AC121580.3| Mus musculus BAC clone RP23-255J21 from 9, complete sequence
          Length = 200282

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   gaggaaggcatttcttcatt 438
             ||||||||||||||||||||
Sbjct: 50876 gaggaaggcatttcttcatt 50895



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>gb|AC110530.10| Mus musculus chromosome 9, clone RP23-414K12, complete sequence
          Length = 207312

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   tcaagtgaaatctctaaaag 338
             ||||||||||||||||||||
Sbjct: 14363 tcaagtgaaatctctaaaag 14382



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>gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosome 16, complete
             sequence
          Length = 183111

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   tgaggaaggcatttcttcat 437
             ||||||||||||||||||||
Sbjct: 42560 tgaggaaggcatttcttcat 42579



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>emb|AL929028.29| Zebrafish DNA sequence from clone CH211-13F6 in linkage group 20,
            complete sequence
          Length = 182372

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 426  gcatttcttcatttgatcattgtt 449
            ||||||||||||||| ||||||||
Sbjct: 1407 gcatttcttcatttgttcattgtt 1430



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>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence
          Length = 95814

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gttgttgatcagtctacagg 102
             ||||||||||||||||||||
Sbjct: 69346 gttgttgatcagtctacagg 69327



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>emb|AJ632322.1| Cotesia congregata virus complete genome, segment Circle20
          Length = 19161

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 53   gaaagtcaacaagttcaatg 72
            ||||||||||||||||||||
Sbjct: 2160 gaaagtcaacaagttcaatg 2141



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>gb|AC110760.3| Homo sapiens BAC clone RP11-44F21 from 4, complete sequence
          Length = 171632

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   ttctggtgatgtttctacat 143
             ||||||||||||||||||||
Sbjct: 37910 ttctggtgatgtttctacat 37891



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>gb|U40420.1| Caenorhabditis elegans cosmid F40F4, complete sequence
          Length = 33677

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   gatcattgttttccagatgg 459
             ||||||||||||||||||||
Sbjct: 25513 gatcattgttttccagatgg 25494



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>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence
          Length = 256130

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     cctcaacatgtgctgtcaga 46
              ||||||||||||||||||||
Sbjct: 248454 cctcaacatgtgctgtcaga 248473



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>gb|AC154804.2| Mus musculus BAC clone RP24-506H9 from chromosome 16, complete sequence
          Length = 176299

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    cctcaacatgtgctgtcaga 46
             ||||||||||||||||||||
Sbjct: 49985 cctcaacatgtgctgtcaga 50004



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>gb|AY910577.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 1
             (ABCB1) gene, complete cds
          Length = 213010

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   gtgatgtttctacatttctt 148
             ||||||||||||||||||||
Sbjct: 14495 gtgatgtttctacatttctt 14476



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>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     acaagttcaatgcacaaata 80
              ||||||||||||||||||||
Sbjct: 129789 acaagttcaatgcacaaata 129770


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,835,781
Number of Sequences: 3902068
Number of extensions: 4835781
Number of successful extensions: 93516
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93417
Number of HSP's gapped (non-prelim): 96
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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