>ATXR5_ARATH (Q8VZJ1) Histone-lysine N-methyltransferase ATXR5 (EC 2.1.1.43)|
           (Trithorax-related protein 5) (TRX-related protein 5)
           (Protein SET DOMAIN GROUP 15)
          Length = 352

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 92  PLVREAEDLRRRREMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWL 268
           P+V + E+       +  C++CG       LL C  C+    H  CL  I   + +  WL
Sbjct: 49  PVVEQEEEEDEDSYSNVTCEKCGSGEGDDELLLCDKCDRGF-HMKCLRPIVVRVPIGTWL 107

Query: 269 CSDC 280
           C DC
Sbjct: 108 CVDC 111

>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing|
           protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD
           and RING finger domains protein 2) (Np95-like ring
           finger protein) (Nuclear zinc finger protein Np97)
           (NIRF)
          Length = 803

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 146 CDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE--WLCSDCIPKHSEAI 304
           C +CG+    ++ L C  C N A H YCL      +  E  W C  C    SE +
Sbjct: 348 CHKCGEKRDPNMQLLCDEC-NMAYHIYCLSPPLDKVPEEEYWYCPSCKTDSSEVV 401

>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)|
           (Protein GYMNOS)
          Length = 1384

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 89  DPLVREAEDLRRRREMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE-W 265
           D    + E + R    ++ C  CG+   S  L+ C+ C  A  H  CL     D +VE W
Sbjct: 33  DRTFEQVEAIVRTDAKENACQACGE---STNLVSCNTCTYAF-HAKCLVPPLKDASVENW 88

Query: 266 LCSDCIPKHSE 298
            C +C+   +E
Sbjct: 89  RCPECVSPLNE 99

>ATXR6_ARATH (Q9FNE9) Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43)|
           (Trithorax-related protein 6) (TRX-related protein 6)
           (Protein SET DOMAIN GROUP 34)
          Length = 349

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = +2

Query: 131 EMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDC----IPK 289
           + D VC+EC        LL C  C+    H +CL  I   +    W C  C    IPK
Sbjct: 30  DWDTVCEECSSGKQPAKLLLCDKCDKGF-HLFCLRPILVSVPKGSWFCPSCSKHQIPK 86

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 143  VCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDCI 283
            VC+ CG       LL C +C + + H YCLD     +    W C  C+
Sbjct: 1154 VCEVCGQASDPSRLLLCDDC-DISYHTYCLDPPLLTVPKGGWKCKWCV 1200

>BAZ1A_XENLA (Q8UVR5) Bromodomain adjacent to zinc finger domain 1A|
           (ATP-utilizing chromatin assembly and remodely factor 1)
           (xACF1) (Fragment)
          Length = 627

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 146 CDECGDVGYSHLLLRCSNCNNAARHRYCL-DEINFDLAVEWLCSDCIPK 289
           C  C   G    ++ C  C+    H YC+  ++ +    +W C +C PK
Sbjct: 225 CKVCRKKGDGESMVLCDGCDRG-HHIYCVRPKLKYVPEGDWFCPECHPK 272

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 143  VCDECGDVGYSHLLLRCSNCNNAARHRYCLD-EINFDLAVEWLCSDCI 283
            VC+ CG       LL C +C + + H YCLD  +       W C  C+
Sbjct: 1002 VCEACGKATDPGRLLLCDDC-DISYHTYCLDPPLQTVPKGGWKCKWCV 1048

>TIF1A_HUMAN (O15164) Transcription intermediary factor 1-alpha (TIF1-alpha)|
           (Tripartite motif protein 24) (RING finger protein 82)
          Length = 1050

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 191 CSNC-NNAARHRYCLDEINFDLAVEWLCSDCIPKH 292
           C++C +NA  + +C++       VEWLC  CI  H
Sbjct: 163 CTSCEDNAEANGFCVE------CVEWLCKTCIRAH 191

>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa polypeptide (EC|
            2.7.7.6) (C128) (RNA polymerase III subunit 2)
          Length = 1149

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 140  DVCDECGDVGYSHLLLRCSNCNN 208
            DVCD+CG +GYS     C +  N
Sbjct: 1093 DVCDKCGLMGYSGWCTTCKSAEN 1115

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 143  VCDECGDVGYSHLLLRCSNCNNAARHRYCLD-EINFDLAVEWLCSDCI 283
            VC+ CG       LL C +C + + H YCLD  +       W C  C+
Sbjct: 1009 VCEACGKATDPGRLLLCDDC-DISYHTYCLDPPLQTVPKGGWKCKWCV 1055

>TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (TIF1-alpha)|
           (Tripartite motif protein 24)
          Length = 1051

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 191 CSNC-NNAARHRYCLDEINFDLAVEWLCSDCIPKH 292
           C++C +NA  + +C++       VEWLC  CI  H
Sbjct: 163 CTSCEDNAEANGFCVE------CVEWLCKTCIRAH 191

>EGFR_DROME (P04412) Epidermal growth factor receptor precursor (EC 2.7.10.1)|
           (Egfr) (Gurken receptor) (Protein torpedo) (Drosophila
           relative of ERBB)
          Length = 1426

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 128 REMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPKHSE 298
           R+   +C+ C + GY   +  CS C +  R   C  E   D   +    +C  +H E
Sbjct: 738 RKCHPLCELCTNYGYHEQV--CSKCTHYKRREQCETECPADHYTDEEQRECFQRHPE 792

>ESR1_ICTPU (Q9YHZ7) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)|
          Length = 617

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = -3

Query: 155 TRRTHHPSRGAS--SDLP--PPGLEDHPKP 78
           T  THHPS G++  +DLP  PPG    P P
Sbjct: 588 TTTTHHPSNGSTCPADLPSNPPGPGQSPSP 617

>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)|
           (dPKC53E(EY)) (Protein INAC) (Inactivation no
           after-potential C protein) (Photoreceptor-specific PKC)
           (Eye-PKC)
          Length = 700

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 146 CDECGDV--GYSHLLLRCSNCNNAARH 220
           CDECG +  G +H  ++C NCN    H
Sbjct: 150 CDECGLLLHGVAHQGVKCENCNLNVHH 176

>JHD1_CANAL (Q5A847) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 478

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query: 185 LRCSNCNNAARHRYCLD--EINFDLAVEWLCSDCIPKHSEA 301
           ++CS C     H +CLD      D  V + C +C+PK+ E+
Sbjct: 33  IQCSKCK-VWYHVHCLDLPTDEIDQIVIYHCPECVPKYGES 72

>PRH_PETCR (P48786) Pathogenesis-related homeodomain protein (PRHP)|
          Length = 1088

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
 Frame = +2

Query: 113 DLRRRREMDDV-CDECG--DVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE-----WL 268
           D R   + +D+ C +CG  DV  S+ ++ C    +   H++CLD       +      WL
Sbjct: 569 DSRGEIDSEDIFCAKCGSKDVTLSNDIILCDGACDRGFHQFCLDPPLLKEYIPPDDEGWL 628

Query: 269 CSDC 280
           C  C
Sbjct: 629 CPGC 632

>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
           (ATP-dependent helicase Chd3)
          Length = 892

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 137 DDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDCIPKHSEA 301
           ++ C  C D G    LL C +C +   HR CL      +   +W+C  CIP   +A
Sbjct: 35  EEYCKVCSDGGD---LLCCDSCPSVY-HRTCLSPPLKSIPKGDWICPRCIPLPGKA 86

>BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain protein 1A|
            (ATP-utilizing chromatin assembly and remodeling factor
            1) (hACF1) (ATP-dependent chromatin remodelling protein)
            (Williams syndrome transcription factor-related chromatin
            remodeli
          Length = 1556

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 146  CDECGDVGYSHLLLRCSNCNNAARHRYCL-DEINFDLAVEWLCSDCIPK 289
            C  C   G +  ++ C  C+    H YC+  ++      +W C +C PK
Sbjct: 1151 CKICRKKGDAENMVLCDGCDRG-HHTYCVRPKLKTVPEGDWFCPECRPK 1198

>PHF10_XENLA (Q63ZP1) PHD finger protein 10|
          Length = 417

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 167 GYSHLLLRCSNCNNAARHRYCLDEINFDLAV----EWLCSDC 280
           G S  L+ CS C+N+  H  CLD     +AV     W C +C
Sbjct: 312 GRSERLIHCSQCDNSG-HPSCLDMSAELVAVIKKYPWQCMEC 352

>LIN49_CAEEL (Q20318) Protein lin-49 (Abnormal cell lineage protein 49)|
          Length = 1042

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 131 EMDDVCDEC--GDVGYSHLLLRCSNCNNAARHRYC 229
           E+DDVC+ C  GD    + ++ C  CN +  H+ C
Sbjct: 193 ELDDVCNICLDGDTSNCNQIVYCDRCNLSV-HQDC 226

>ATX2_ARATH (Q9MA43) Histone-lysine N-methyltransferase ATX2 (EC 2.1.1.43)|
           (Trithorax-homolog protein 2) (TRX-homolog protein 2)
           (Protein SET DOMAIN GROUP 30)
          Length = 1193

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 140 DVCDECG-DVGY-SHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIP 286
           D C+ C  D  Y ++L L+C  C     H  C  ++     + WLC+ C P
Sbjct: 589 DKCNVCHMDEEYENNLFLQCDKCRMMV-HTRCYGQLEPHNGILWLCNLCRP 638

>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)|
          Length = 2813

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 131  EMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPKHSEAI 304
            E  DVC  C D+  S + LR + C+       CL    + L     C  C+P   E +
Sbjct: 2446 EACDVCT-CTDLEDSVMGLRVAQCSQKPCEDNCLSGFTYVLHEGECCGRCLPSACEVV 2502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,138,644
Number of Sequences: 219361
Number of extensions: 442540
Number of successful extensions: 1589
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)