ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 212 8e-52
2dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic D... 212 8e-52
3dbj|AP005615.3| Oryza sativa (japonica cultivar-group) genomic D... 212 8e-52
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 151 2e-33
6emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa... 151 2e-33
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
8emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4,... 145 2e-31
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
10dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
11emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 i... 44 0.41
12ref|XM_471030.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
13gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
14emb|BX927275.8| Zebrafish DNA sequence from clone DKEY-108P14 in... 42 1.6
15gb|AC103560.2| Homo sapiens chromosome 3 clone RP11-673E20, comp... 42 1.6
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19dbj|AP005779.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
20dbj|AP003931.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
21dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
23emb|AL928949.12| Mouse DNA sequence from clone RP23-226K16 on ch... 42 1.6
24gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
25ref|XM_544534.2| PREDICTED: Canis familiaris similar to kelch-li... 40 6.5
26emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chr... 40 6.5
27emb|CR381637.5| Zebrafish DNA sequence from clone DKEY-225P19 in... 40 6.5
28gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-3... 40 6.5
29gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-30... 40 6.5
30gb|AC025198.12| Homo sapiens chromosome 17, clone RP11-766H1, co... 40 6.5
31gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 6.5
32gb|AC024909.28| Homo sapiens 12 BAC RP11-823E8 (Roswell Park Can... 40 6.5
33gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 6.5
34dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 6.5
35gb|AC154356.2| Mus musculus BAC clone RP23-189C20 from 13, compl... 40 6.5
36gb|AC098597.2| Homo sapiens BAC clone RP11-521C6 from 4, complet... 40 6.5 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  212 bits (107), Expect = 8e-52
 Identities = 224/263 (85%)
 Strand = Plus / Plus

                                                                            
Query: 93       accctgaaacccaagctttttatgacttgttgagagatgcagacgtacctttgtggaatg 152
                ||||||||||||||||||| | ||||||  | ||||| || |||  |||||| |||   |
Sbjct: 20250698 accctgaaacccaagctttctttgacttaattagagaggccgaccaacctttttggccgg 20250757

                                                                            
Query: 153      ggtgtgaactatcaaaactttctttccttgtgcttctgttcaacataaaatccactaaca 212
                | |||||||| ||||||||||| |||||||||||| ||||| | | |||||||| |||||
Sbjct: 20250758 gatgtgaactttcaaaactttcattccttgtgcttttgttccatagaaaatccattaaca 20250817

                                                                            
Query: 213      agtggagcaataaatctataaatgatttgctagcagttctgcagcaagcaattccaaatg 272
                ||||||||||||||||  | ||||||||||||||| || |||| |||||||| |||||||
Sbjct: 20250818 agtggagcaataaatcattgaatgatttgctagcaattttgcaacaagcaatcccaaatg 20250877

                                                                            
Query: 273      gcaataatttacctggaacttttgccgaggctaagaagatcattggaaagcttgggctta 332
                | |  ||| ||||| |||| ||| ||||||||| |||||| |||||||| ||||||||||
Sbjct: 20250878 gtagcaatatacctagaacattttccgaggctaggaagataattggaaaacttgggctta 20250937

                                       
Query: 333      gttatgagagaattcatgtttgt 355
                ||||||||| |||||||||||||
Sbjct: 20250938 gttatgagaaaattcatgtttgt 20250960



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 365     tgtcagcttttttggaaagagaagg 389
               |||||||| ||||||||||||||||
Sbjct: 1500592 tgtcagctgttttggaaagagaagg 1500616
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>dbj|AP004877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0472F10
          Length = 136076

 Score =  212 bits (107), Expect = 8e-52
 Identities = 224/263 (85%)
 Strand = Plus / Plus

                                                                          
Query: 93     accctgaaacccaagctttttatgacttgttgagagatgcagacgtacctttgtggaatg 152
              ||||||||||||||||||| | ||||||  | ||||| || |||  |||||| |||   |
Sbjct: 124004 accctgaaacccaagctttctttgacttaattagagaggccgaccaacctttttggccgg 124063

                                                                          
Query: 153    ggtgtgaactatcaaaactttctttccttgtgcttctgttcaacataaaatccactaaca 212
              | |||||||| ||||||||||| |||||||||||| ||||| | | |||||||| |||||
Sbjct: 124064 gatgtgaactttcaaaactttcattccttgtgcttttgttccatagaaaatccattaaca 124123

                                                                          
Query: 213    agtggagcaataaatctataaatgatttgctagcagttctgcagcaagcaattccaaatg 272
              ||||||||||||||||  | ||||||||||||||| || |||| |||||||| |||||||
Sbjct: 124124 agtggagcaataaatcattgaatgatttgctagcaattttgcaacaagcaatcccaaatg 124183

                                                                          
Query: 273    gcaataatttacctggaacttttgccgaggctaagaagatcattggaaagcttgggctta 332
              | |  ||| ||||| |||| ||| ||||||||| |||||| |||||||| ||||||||||
Sbjct: 124184 gtagcaatatacctagaacattttccgaggctaggaagataattggaaaacttgggctta 124243

                                     
Query: 333    gttatgagagaattcatgtttgt 355
              ||||||||| |||||||||||||
Sbjct: 124244 gttatgagaaaattcatgtttgt 124266
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>dbj|AP005615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBb0006J22
          Length = 145271

 Score =  212 bits (107), Expect = 8e-52
 Identities = 224/263 (85%)
 Strand = Plus / Plus

                                                                        
Query: 93   accctgaaacccaagctttttatgacttgttgagagatgcagacgtacctttgtggaatg 152
            ||||||||||||||||||| | ||||||  | ||||| || |||  |||||| |||   |
Sbjct: 1503 accctgaaacccaagctttctttgacttaattagagaggccgaccaacctttttggccgg 1562

                                                                        
Query: 153  ggtgtgaactatcaaaactttctttccttgtgcttctgttcaacataaaatccactaaca 212
            | |||||||| ||||||||||| |||||||||||| ||||| | | |||||||| |||||
Sbjct: 1563 gatgtgaactttcaaaactttcattccttgtgcttttgttccatagaaaatccattaaca 1622

                                                                        
Query: 213  agtggagcaataaatctataaatgatttgctagcagttctgcagcaagcaattccaaatg 272
            ||||||||||||||||  | ||||||||||||||| || |||| |||||||| |||||||
Sbjct: 1623 agtggagcaataaatcattgaatgatttgctagcaattttgcaacaagcaatcccaaatg 1682

                                                                        
Query: 273  gcaataatttacctggaacttttgccgaggctaagaagatcattggaaagcttgggctta 332
            | |  ||| ||||| |||| ||| ||||||||| |||||| |||||||| ||||||||||
Sbjct: 1683 gtagcaatatacctagaacattttccgaggctaggaagataattggaaaacttgggctta 1742

                                   
Query: 333  gttatgagagaattcatgtttgt 355
            ||||||||| |||||||||||||
Sbjct: 1743 gttatgagaaaattcatgtttgt 1765
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  151 bits (76), Expect = 2e-33
 Identities = 199/240 (82%)
 Strand = Plus / Minus

                                                                            
Query: 195      acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
                ||||||||||   |||||||||||| ||||||||  ||||||||||||||||| |  |||
Sbjct: 22002395 acataaaatcagttaacaagtggagtaataaatcattaaatgatttgctagcaatcttgc 22002336

                                                                            
Query: 255      agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
                | ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |
Sbjct: 22002335 aacaagcaattccaaatggtaagaatttacctggaacatttgctgaagctaagaagataa 22002276

                                                                            
Query: 315      ttggaaagcttgggcttagttatgagagaattcatgtttgtgaaaaagattgtcagcttt 374
                | ||||||||||| |||| |||||  | |||||||||||||  |||  | || |||||||
Sbjct: 22002275 taggaaagcttggacttaattatgtcaaaattcatgtttgtccaaataactgccagcttt 22002216

                                                                            
Query: 375      tttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaaa 434
                 | ||||||  ||||| |  ||||||||||| |||  ||||||  | |||||||||||||
Sbjct: 22002215 ataggaaagctaaggcaaacgatgacttttgttcaaaatgtggtacttcaaggtggaaaa 22002156
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  151 bits (76), Expect = 2e-33
 Identities = 199/240 (82%)
 Strand = Plus / Minus

                                                                            
Query: 195      acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
                ||||||||||   |||||||||||| ||||||||  ||||||||||||||||| |  |||
Sbjct: 21930740 acataaaatcagttaacaagtggagtaataaatcattaaatgatttgctagcaatcttgc 21930681

                                                                            
Query: 255      agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
                | ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |
Sbjct: 21930680 aacaagcaattccaaatggtaagaatttacctggaacatttgctgaagctaagaagataa 21930621

                                                                            
Query: 315      ttggaaagcttgggcttagttatgagagaattcatgtttgtgaaaaagattgtcagcttt 374
                | ||||||||||| |||| |||||  | |||||||||||||  |||  | || |||||||
Sbjct: 21930620 taggaaagcttggacttaattatgtcaaaattcatgtttgtccaaataactgccagcttt 21930561

                                                                            
Query: 375      tttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaaa 434
                 | ||||||  ||||| |  ||||||||||| |||  ||||||  | |||||||||||||
Sbjct: 21930560 ataggaaagctaaggcaaacgatgacttttgttcaaaatgtggtacttcaaggtggaaaa 21930501
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>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 138308

 Score =  151 bits (76), Expect = 2e-33
 Identities = 199/240 (82%)
 Strand = Plus / Minus

                                                                          
Query: 195    acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
              ||||||||||   |||||||||||| ||||||||  ||||||||||||||||| |  |||
Sbjct: 108523 acataaaatcagttaacaagtggagtaataaatcattaaatgatttgctagcaatcttgc 108464

                                                                          
Query: 255    agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
              | ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |
Sbjct: 108463 aacaagcaattccaaatggtaagaatttacctggaacatttgctgaagctaagaagataa 108404

                                                                          
Query: 315    ttggaaagcttgggcttagttatgagagaattcatgtttgtgaaaaagattgtcagcttt 374
              | ||||||||||| |||| |||||  | |||||||||||||  |||  | || |||||||
Sbjct: 108403 taggaaagcttggacttaattatgtcaaaattcatgtttgtccaaataactgccagcttt 108344

                                                                          
Query: 375    tttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaaa 434
               | ||||||  ||||| |  ||||||||||| |||  ||||||  | |||||||||||||
Sbjct: 108343 ataggaaagctaaggcaaacgatgacttttgttcaaaatgtggtacttcaaggtggaaaa 108284
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score =  145 bits (73), Expect = 2e-31
 Identities = 200/241 (82%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                          
Query: 195    acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
              |||||||||||| |||||||||||| ||||||||| ||||||||||||||||  | ||||
Sbjct: 830707 acataaaatccattaacaagtggagtaataaatctttaaatgatttgctagcgatcctgc 830766

                                                                          
Query: 255    agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
              | ||||||||||||||||| || | ||||||| |||| ||||  ||||| | |||||| |
Sbjct: 830767 aacaagcaattccaaatggtaagagtttacctagaacatttgttgaggccaggaagataa 830826

                                                                          
Query: 315    ttggaaagcttgggcttagttatgagagaattcatgtttgt-gaaaaagattgtcagctt 373
              | ||||||||||| |||| |||||  |  ||||||||||||  ||||| | ||||| |||
Sbjct: 830827 tgggaaagcttggacttaattatgtcaagattcatgtttgtccaaaaaaactgtcaactt 830886

                                                                          
Query: 374    ttttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaa 433
              |   ||||||| ||||| |  ||||||||||| |||  ||||||| | ||||||||||||
Sbjct: 830887 tacaggaaagacaaggcaaatgatgacttttgttcaaaatgtggaacttcaaggtggaaa 830946

               
Query: 434    a 434
              |
Sbjct: 830947 a 830947
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>emb|AL606992.3|OSJN00116 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L13,
             complete sequence
          Length = 143386

 Score =  145 bits (73), Expect = 2e-31
 Identities = 200/241 (82%), Gaps = 1/241 (0%)
 Strand = Plus / Plus

                                                                         
Query: 195   acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
             |||||||||||| |||||||||||| ||||||||| ||||||||||||||||  | ||||
Sbjct: 51368 acataaaatccattaacaagtggagtaataaatctttaaatgatttgctagcgatcctgc 51427

                                                                         
Query: 255   agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
             | ||||||||||||||||| || | ||||||| |||| ||||  ||||| | |||||| |
Sbjct: 51428 aacaagcaattccaaatggtaagagtttacctagaacatttgttgaggccaggaagataa 51487

                                                                         
Query: 315   ttggaaagcttgggcttagttatgagagaattcatgtttgt-gaaaaagattgtcagctt 373
             | ||||||||||| |||| |||||  |  ||||||||||||  ||||| | ||||| |||
Sbjct: 51488 tgggaaagcttggacttaattatgtcaagattcatgtttgtccaaaaaaactgtcaactt 51547

                                                                         
Query: 374   ttttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaa 433
             |   ||||||| ||||| |  ||||||||||| |||  ||||||| | ||||||||||||
Sbjct: 51548 tacaggaaagacaaggcaaatgatgacttttgttcaaaatgtggaacttcaaggtggaaa 51607

              
Query: 434   a 434
             |
Sbjct: 51608 a 51608
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  135 bits (68), Expect = 1e-28
 Identities = 197/240 (82%)
 Strand = Plus / Plus

                                                                            
Query: 195      acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
                ||||||||||   ||||||||| |  ||||||||  ||||||||||||||||| |  |||
Sbjct: 32402921 acataaaatcagttaacaagtgaaataataaatcattaaatgatttgctagcaatcttgc 32402980

                                                                            
Query: 255      agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
                | ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |
Sbjct: 32402981 aacaagcaattccaaatggtaagaatttacctggaacatttgctgaagctaagaagataa 32403040

                                                                            
Query: 315      ttggaaagcttgggcttagttatgagagaattcatgtttgtgaaaaagattgtcagcttt 374
                | ||||||||||| |||| |||||  | |||||||||||||  |||  | || |||||||
Sbjct: 32403041 taggaaagcttggacttaattatgtcaaaattcatgtttgtccaaataactgccagcttt 32403100

                                                                            
Query: 375      tttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaaa 434
                 | ||||||  ||||| |  ||||||||||| |||  ||||||  | |||||||||||||
Sbjct: 32403101 ataggaaagctaaggcaaacgatgacttttgttcaaaatgtggtacttcaaggtggaaaa 32403160
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1143G03
          Length = 137770

 Score =  135 bits (68), Expect = 1e-28
 Identities = 197/240 (82%)
 Strand = Plus / Plus

                                                                         
Query: 195   acataaaatccactaacaagtggagcaataaatctataaatgatttgctagcagttctgc 254
             ||||||||||   ||||||||| |  ||||||||  ||||||||||||||||| |  |||
Sbjct: 82418 acataaaatcagttaacaagtgaaataataaatcattaaatgatttgctagcaatcttgc 82477

                                                                         
Query: 255   agcaagcaattccaaatggcaataatttacctggaacttttgccgaggctaagaagatca 314
             | ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| |
Sbjct: 82478 aacaagcaattccaaatggtaagaatttacctggaacatttgctgaagctaagaagataa 82537

                                                                         
Query: 315   ttggaaagcttgggcttagttatgagagaattcatgtttgtgaaaaagattgtcagcttt 374
             | ||||||||||| |||| |||||  | |||||||||||||  |||  | || |||||||
Sbjct: 82538 taggaaagcttggacttaattatgtcaaaattcatgtttgtccaaataactgccagcttt 82597

                                                                         
Query: 375   tttggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaaa 434
              | ||||||  ||||| |  ||||||||||| |||  ||||||  | |||||||||||||
Sbjct: 82598 ataggaaagctaaggcaaacgatgacttttgttcaaaatgtggtacttcaaggtggaaaa 82657
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>emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 in linkage group 7,
             complete sequence
          Length = 124192

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 244   agcagttctgcagcaagcaatt 265
             ||||||||||||||||||||||
Sbjct: 35927 agcagttctgcagcaagcaatt 35906
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>ref|XM_471030.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2406

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 378 ggaaagagaaggctacggatgacttttgctcagtatgtggagcatcaaggtggaaaa 434
           ||||||| ||||| |  ||||||||||| |||  ||||||| | |||||||||||||
Sbjct: 743 ggaaagacaaggcaaatgatgacttttgttcaaaatgtggaacttcaaggtggaaaa 799
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>gb|AC090441.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0052C09, complete sequence
          Length = 139468

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 365   tgtcagcttttttggaaagagaagg 389
             |||||||| ||||||||||||||||
Sbjct: 37624 tgtcagctgttttggaaagagaagg 37600
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>emb|BX927275.8| Zebrafish DNA sequence from clone DKEY-108P14 in linkage group 23,
             complete sequence
          Length = 133912

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 171   tttctttccttgtgcttctgt 191
             |||||||||||||||||||||
Sbjct: 83378 tttctttccttgtgcttctgt 83358
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>gb|AC103560.2| Homo sapiens chromosome 3 clone RP11-673E20, complete sequence
          Length = 186241

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   tctgttcaacataaaatccac 207
             |||||||||||||||||||||
Sbjct: 86213 tctgttcaacataaaatccac 86193
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 365     tgtcagcttttttggaaagagaagg 389
               |||||||| ||||||||||||||||
Sbjct: 9685099 tgtcagctgttttggaaagagaagg 9685075
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 365      tgtcagcttttttggaaagagaagg 389
                |||||||| ||||||||||||||||
Sbjct: 17041189 tgtcagctgttttggaaagagaagg 17041213
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 365     tgtcagcttttttggaaagagaagg 389
               |||||||| ||||||||||||||||
Sbjct: 6190393 tgtcagctgttttggaaagagaagg 6190369
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>dbj|AP005779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0042J07
          Length = 126938

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 365   tgtcagcttttttggaaagagaagg 389
             |||||||| ||||||||||||||||
Sbjct: 93403 tgtcagctgttttggaaagagaagg 93379
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>dbj|AP003931.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1664_D08
          Length = 128553

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 365   tgtcagcttttttggaaagagaagg 389
             |||||||| ||||||||||||||||
Sbjct: 64948 tgtcagctgttttggaaagagaagg 64924
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 365   tgtcagcttttttggaaagagaagg 389
             |||||||| ||||||||||||||||
Sbjct: 64013 tgtcagctgttttggaaagagaagg 64037
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>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0410E02
          Length = 144294

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 365   tgtcagcttttttggaaagagaagg 389
             |||||||| ||||||||||||||||
Sbjct: 76706 tgtcagctgttttggaaagagaagg 76730
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>emb|AL928949.12| Mouse DNA sequence from clone RP23-226K16 on chromosome 2, complete
             sequence
          Length = 200500

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 431   aaaacaaacctgataaaccat 451
             |||||||||||||||||||||
Sbjct: 34390 aaaacaaacctgataaaccat 34370
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 365     tgtcagcttttttggaaagagaagg 389
               |||||||| ||||||||||||||||
Sbjct: 9691138 tgtcagctgttttggaaagagaagg 9691114
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>ref|XM_544534.2| PREDICTED: Canis familiaris similar to kelch-like ECH-associated
           protein 1 (LOC487409), mRNA
          Length = 3102

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 458 aacagggaaggaaaagcatc 477
           ||||||||||||||||||||
Sbjct: 507 aacagggaaggaaaagcatc 526
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>emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chromosome 1 Contains the 3'
              end of a novel gene, a glyceraldehyde-3-phosphate
              dehydrogenase (GAPD) pseudogene and a CpG island, complete
              sequence
          Length = 178309

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    catcaaggtggaaaacaaac 439
              ||||||||||||||||||||
Sbjct: 108488 catcaaggtggaaaacaaac 108507
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>emb|CR381637.5| Zebrafish DNA sequence from clone DKEY-225P19 in linkage group 21,
              complete sequence
          Length = 171229

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 215    tggagcaataaatctataaatgat 238
              |||| |||||||||||||||||||
Sbjct: 135657 tggatcaataaatctataaatgat 135634
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>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence
          Length = 219769

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cagcttttttggaaagagaa 387
             ||||||||||||||||||||
Sbjct: 62737 cagcttttttggaaagagaa 62756
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>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence
          Length = 213462

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    cagcttttttggaaagagaa 387
              ||||||||||||||||||||
Sbjct: 167298 cagcttttttggaaagagaa 167317
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>gb|AC025198.12| Homo sapiens chromosome 17, clone RP11-766H1, complete sequence
          Length = 198524

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    gggtctcaactgaatgactg 60
             ||||||||||||||||||||
Sbjct: 95191 gggtctcaactgaatgactg 95172
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      gccctccagaacatggacca 91
               ||||||||||||||||||||
Sbjct: 2959044 gccctccagaacatggacca 2959025
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>gb|AC024909.28| Homo sapiens 12 BAC RP11-823E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179151

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   gagcaataaatctataaatgattt 240
             |||| |||||||||||||||||||
Sbjct: 67129 gagctataaatctataaatgattt 67152
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    tttttggaaagagaaggcta 392
              ||||||||||||||||||||
Sbjct: 221838 tttttggaaagagaaggcta 221819
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    aaaatccactaacaagtgga 218
              ||||||||||||||||||||
Sbjct: 785677 aaaatccactaacaagtgga 785658
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>gb|AC154356.2| Mus musculus BAC clone RP23-189C20 from 13, complete sequence
          Length = 201031

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   actttctttccttgtgcttctgtt 192
             ||||||| ||||||||||||||||
Sbjct: 39343 actttctctccttgtgcttctgtt 39366
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>gb|AC098597.2| Homo sapiens BAC clone RP11-521C6 from 4, complete sequence
          Length = 177846

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    atgatttgctagcagttctg 253
              ||||||||||||||||||||
Sbjct: 114270 atgatttgctagcagttctg 114289


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,236,163
Number of Sequences: 3902068
Number of extensions: 5236163
Number of successful extensions: 102009
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101389
Number of HSP's gapped (non-prelim): 610
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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