>PER_DROWI (Q03297) Period circadian protein (Fragment)|
          Length = 1093

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
 Frame = -1

Query: 321  CCRSIVLWPP*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 175
            C ++I LWPP ++ I       S + A    SF+ +H  L+ +  + P+ +     S+T+
Sbjct: 803  CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSSTN 861

Query: 174  WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 73
             NP    K      S E PS  Q   A   P+++
Sbjct: 862  TNPNRPHKHAHVHSSSEKPSTSQA-AAATMPLQY 894

>C5AP_STRP6 (Q5X9R0) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1184

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +1

Query: 250 DIEAGTVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 426
           DI+A TV  D+ ++ +  +   T  P + S E  S K TKT +  DD ++ V +   D+
Sbjct: 28  DIKANTVTEDTPATEQAVE---TPQPTAVSEEAPSSKETKTPQTPDDAEETVADKANDL 83

>PER_DROPV (P91698) Period circadian protein (Fragment)|
          Length = 396

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
 Frame = -1

Query: 321 CCRSIVLWPP*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 175
           C ++I LWPP ++ I       S + A    SF+ +H  L+ +  + P+ +     S+T+
Sbjct: 280 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSSTN 338

Query: 174 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 73
            NP    K      S E PS  Q   A   P+++
Sbjct: 339 TNPNRPHKHAHVHNSSEKPSTSQA-AAATMPLQY 371

>PER_DROPU (P91697) Period circadian protein (Fragment)|
          Length = 396

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
 Frame = -1

Query: 321 CCRSIVLWPP*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 175
           C ++I LWPP ++ I       S + A    SF+ +H  L+ +  + P+ +     S+T+
Sbjct: 280 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSSTN 338

Query: 174 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 73
            NP    K      S E PS  Q   A   P+++
Sbjct: 339 TNPNRPHKHAHVHNSSEKPSTSQA-AAATMPLQY 371

>PER_DROEQ (P92203) Period circadian protein (Fragment)|
          Length = 395

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
 Frame = -1

Query: 321 CCRSIVLWPP*TIRI-------SDYRA----SFNIRHLHLYLSGQFSPSVLIPREISATD 175
           C ++I LWPP ++ I       S + A    SF+ +H  L+ +  + P+ +     S T+
Sbjct: 279 CTQNINLWPPFSVGITTPTSVLSSHTAVPPSSFSPQH-SLFPTFYYIPASIAASSPSGTN 337

Query: 174 WNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 73
            NP    K      S E PS  Q   A   P+++
Sbjct: 338 TNPNRPHKHAHVHNSSEKPSTSQA-AAATMPLQY 370

>C5AP_STRP1 (P58099) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1181

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 250 DIEAGTVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 426
           DI+A TV  D+ ++ +  +   T  P + S E  S K TKT +  DD ++ + +   D+
Sbjct: 28  DIKANTVTEDTPATEQAVE---TPQPTAVSEEAPSSKETKTPQTPDDAEETIADDANDL 83

>PER_DROIN (P91613) Period circadian protein (Fragment)|
          Length = 391

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
 Frame = -1

Query: 339 TSTVWDCCRSIVLWPP*TIRISD-----------YRASFNIRHLHLYLSGQFSPSVLIPR 193
           T +   C ++I LWPP ++ I+             ++SF+ +H  L+ +  + P+ +   
Sbjct: 269 TQSGLSCTQNINLWPPFSVGITTPTSVLSSHTAVAQSSFSPQH-SLFPTFYYIPASIAAS 327

Query: 192 EISATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPIEH 73
             S T  NP    K      S E PS  Q   A   P+++
Sbjct: 328 SPSGTSPNPNRPHKHAHVHSSSEKPSTSQA-AAATMPLQY 366

>TNC6B_HUMAN (Q9UPQ9) Trinucleotide repeat-containing 6B protein|
          Length = 1723

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -1

Query: 174 WN-----PEHLSKFHQEEKSKENPSPPQPNCAGA 88
           WN     P   +K HQ+++  + P PPQP  +G+
Sbjct: 806 WNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGS 839

>RAB3C_HUMAN (Q96E17) Ras-related protein Rab-3C|
          Length = 227

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 144 QEEKSKENPSPPQPNCA 94
           Q  + KE P PPQPNCA
Sbjct: 210 QNTRLKETPPPPQPNCA 226

>IE0_NPVAC (P41710) Immediate-early protein IE-0 (Immediate early 0 protein)|
           (Immediate early transactivator 0)
          Length = 261

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 80  LNTDESFLEPKRTRESA--NQCCIYRW 6
           ++TDE FL+PK   E A  N CC+  W
Sbjct: 218 ISTDERFLKPKECCEYAICNACCVNMW 244

>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 186 SATDWNPEHLSKFHQEEKSKENPSPPQPNCAGANPI 79
           S T+  P+  + F +EE+ +  P+PP P+ + A P+
Sbjct: 411 SGTEPEPKPYNPFEEEEEEEGEPAPPVPSPSLAPPV 446

>YV03_HUMAN (Q9H4I3) Protein PP2447|
          Length = 376

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 244 MPDIEAGTVVTDSDSSRRPQ-DNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITL 420
           + D++A  ++ +    RR Q  N   T+    + +GS      T  F DD    VV+   
Sbjct: 37  LSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIR 96

Query: 421 DIQRDSVSIQM 453
           ++Q D V +++
Sbjct: 97  EVQPDVVVVEL 107

>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:|
            [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38);
            [Acyl-carrier-protein] S-malonyltransferase (EC
            2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC
            2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2511

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = -1

Query: 246  HLHLYLSGQFSPSVLIPREISATDWNPEHLS------KFHQEEKSKENPSPPQPNCAGA 88
            HL+  + G  SP  L+    +ATD +P+ L       + H   + + +P+ P P+  G+
Sbjct: 1251 HLYSRIPGLLSPHPLLQLSYTATDRHPQALEAAQAELQQHDVAQGQWDPADPAPSALGS 1309

>WRKY1_ARATH (Q9SI37) WRKY transcription factor 1 (WRKY DNA-binding protein 1)|
           (Zinc-dependent activator protein 1) (Transcription
           factor ZAP1)
          Length = 487

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 277 DSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVV 408
           + D+++ PQ +T  +I     +E    K TKT  F+   D G V
Sbjct: 385 EGDANKTPQSSTLQSITKDQHVEDHLRKKTKTNGFEKSLDQGPV 428

>SCPA1_STRPY (P15926) C5a peptidase precursor (EC 3.4.21.-) (SCP)|
          Length = 1167

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 250 DIEAGTVVTDSDSSRRPQDNTATTIPNSGSLEGSSHKTTKTTRFKDDGDDGVVEITLDI 426
           DI+A TV  D+  + +  +   T  P + S E  S K TKT +  DD ++ + +   D+
Sbjct: 28  DIKANTVTEDTPVTEQAVE---TPQPTAVSEEVPSSKETKTPQTPDDAEETIADDANDL 83

>SUFE_PHOLL (Q7N3U6) Cysteine desulfuration protein sufE|
          Length = 138

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 217 FSFCLNPERDFSH*LEPGASLEIPPRRKEQRKPES 113
           FS C N E  + + +E GA L  PP   EQR+PE+
Sbjct: 14  FSRCRNWEERYLYMIELGAKL--PPLTDEQRQPEN 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,575,258
Number of Sequences: 219361
Number of extensions: 1296279
Number of successful extensions: 3951
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3947
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)