ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40d03 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 39.7 bits (91), Expect = 0.004 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 10/133 (7%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLLSSDLYREFRDQLAQALLRVEPAILRVL-IEVFRQVAEKDFVKE---- 434 ++ ++ + + + + + A A V+ +L+ L E +R + V Sbjct: 62 RLLTSKDPD---IKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACA 118 Query: 435 ----NSWPELVPQ 461 + WPEL+PQ Sbjct: 119 EIPVSQWPELIPQ 131
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 38.1 bits (87), Expect = 0.011 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 16/139 (11%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLLSSD--LYREFRDQL----AQALLRVEPAILRVL-IEVFRQVAEKDFV 428 K L S D + +++ + A A V+ +L+ L E +R + V Sbjct: 62 K--------NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 Query: 429 KE--------NSWPELVPQ 461 N WPEL+PQ Sbjct: 114 AGIACAEIPVNQWPELIPQ 132
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 36.2 bits (82), Expect = 0.043 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 16/139 (11%) Frame = +3 Query: 93 ELRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD-QGTRIAAAAYL 269 EL ++L T+S D+ ++AA L+R + P F + L V A G+ Q R+AA + Sbjct: 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61 Query: 270 KIFARRNMEGGLLSSD--LYREFRDQL----AQALLRVEPAILRVL-IEVFRQVAEKDFV 428 K L S D + +++ + A A V+ +L+ L E +R + V Sbjct: 62 K--------NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCV 113 Query: 429 KE--------NSWPELVPQ 461 + WPEL+PQ Sbjct: 114 AGIACAEIPVSQWPELIPQ 132
>CP6D3_MUSDO (Q964Q7) Cytochrome P450 6d3 (EC 1.14.-.-) (CYPVID3) (Pyrethroid| resistance cytochrome P450) Length = 520 Score = 33.5 bits (75), Expect = 0.28 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = +3 Query: 270 KIFARRNMEGGLLSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVAEKDF 425 K+F R+ GL+ DLY +F++Q+ L +PA+L E+ RQ+ DF Sbjct: 43 KVF-RKERPFGLVMYDLYEKFQEQVVGIYLFFKPALLIRDAELARQILTSDF 93
>CSE1_PAGMA (Q9PTU3) Importin-alpha re-exporter (Chromosome segregation 1-like| protein) (Cellular apoptosis susceptibility protein) Length = 971 Score = 31.6 bits (70), Expect = 1.1 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Frame = +3 Query: 96 LRSLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKI 275 L L L D T A L+ S G+ +P+ LL + D R+ AA K Sbjct: 11 LTEFLRKALDPDPTVRRPAEKFLE--SVEGNQNYPLLLLTLLEKSQDNVIRVCAAVTFKN 68 Query: 276 FARRNM-----EGGLLSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVAEKDFVKENS 440 + +RN E +S + + +L I + L + + +DF ++ Sbjct: 69 YIKRNWRVIEDEPNKVSDPDRTAIKANIVNLMLSSPEQIQKQLSDAISIIGREDFPQK-- 126 Query: 441 WPELVPQ 461 WP+L+ + Sbjct: 127 WPDLLTE 133
>PKP3_HUMAN (Q9Y446) Plakophilin-3| Length = 797 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -3 Query: 416 LRNLAKNFNQHSKNCRFHSKQSLSKLVAKLPVQIGRQEPPFHV 288 L L +N +++++N S + +S L+ KLP +G + PP V Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEV 717
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%) Frame = +3 Query: 147 AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 263 AA AG +AAGD ++ + AAGDG D GT AAA Sbjct: 933 AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981
>PKP3_MOUSE (Q9QY23) Plakophilin-3| Length = 797 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -3 Query: 416 LRNLAKNFNQHSKNCRFHSKQSLSKLVAKLPVQIGRQEPPFHV 288 L L +N +++++N S + +S L+ KLP +G + PP V Sbjct: 675 LTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKCPPAEV 717
>GIDA_LACJO (Q74H95) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 632 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +3 Query: 294 EGGLLSSDLYREFRDQLAQALLRVEPAILRVLIEVFRQVAE 416 E GL+S D Y+EF+D+ QA+ + AI +V I +V E Sbjct: 457 ELGLISEDRYKEFQDK-KQAISQAMEAIKKVTIHPTDEVQE 496
>PRIM_BUCAI (P57164) DNA primase (EC 2.7.7.-)| Length = 577 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -3 Query: 458 RHKFRPRI----LLDKIFLRNLAKNFNQHSKNCRFH 363 R KF+ RI + K F +N+ KN N S + +FH Sbjct: 351 REKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFH 386 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,850,147 Number of Sequences: 219361 Number of extensions: 655947 Number of successful extensions: 2678 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2677 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
