ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40d02 |
|---|---|
| Clone Library Name | barley_pub |
>KINH_STRPU (P35978) Kinesin heavy chain| Length = 1031 Score = 32.0 bits (71), Expect = 0.44 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -3 Query: 197 HRSPPPGAEPGVRDGGLRYARGGGRP 120 H P PG G+R GG RGGG P Sbjct: 925 HPPPSPGGSTGIRGGGYSGIRGGGSP 950
>CTND1_XENLA (Q8AXM9) Catenin delta-1 (p120 catenin) (p120(ctn)) (Xp120(ctn))| Length = 859 Score = 31.6 bits (70), Expect = 0.58 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Frame = -3 Query: 194 RSPPPGAEPGVRDGGLRYARG---GGRPACLRDGMGLDSARRSQAGVRACESYGDQTDRE 24 R P G +P VR GGL ++ GR D GL+ RRS G Y T R Sbjct: 179 RGPGYGPQPQVRGGGLGGSQSDLLSGRIYGSEDAYGLEDDRRSLGGFIDGPDYA-TTGRR 237 Query: 23 GDDSGD 6 G + GD Sbjct: 238 GANGGD 243
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 31.2 bits (69), Expect = 0.75 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 19/75 (25%) Frame = -3 Query: 194 RSPPPGAEPGVRDGGL----RYARGGGRPACLR---------------DGMGLDSARRSQ 72 +SP PGA PG R GG AR G RP R GMG S RS+ Sbjct: 173 KSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRRTGAPRPGNNPFASSQGMG-QSRHRSE 231 Query: 71 AGVRACESYGDQTDR 27 G R+ S Q +R Sbjct: 232 GGQRSGGSRSGQGER 246
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 31.2 bits (69), Expect = 0.75 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Frame = -3 Query: 209 LPNTHRSPPPGAEPGVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACESYG-DQT 33 LP PPP P R RGGG P R G RR G A + ++ Sbjct: 284 LPPPPPPPPPPQPPPAGGSARRRRRGGGPPG--RGGRRRGGKRRRAEGTEAAAADAEEEE 341 Query: 32 DREGDDSGD 6 D +GD+ D Sbjct: 342 DGDGDEDED 350
>CTGE6_HUMAN (Q86UF2) Protein cTAGE-6 (cTAGE family member 6)| Length = 732 Score = 29.6 bits (65), Expect = 2.2 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = -3 Query: 227 SPRRAYL-PNTHRSPPPGAEPGVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACE 51 S RA+L P T P G P + +GG R RG G P LD ++ G +C+ Sbjct: 486 SETRAFLSPQTLLEDPLGLSPVLPEGGGRGPRGPGNP--------LDHQITNERGEPSCD 537 Query: 50 SYGDQTDREGDDSGDL 3 D R D+G L Sbjct: 538 RLTD-PHRAPSDTGSL 552
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.3 bits (64), Expect = 2.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 227 SPRRAYLPNTHRSPPPGAEPGVRDGGLRYARGGGRPACLRDG 102 +PR + N ++P PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.3 bits (64), Expect = 2.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 227 SPRRAYLPNTHRSPPPGAEPGVRDGGLRYARGGGRPACLRDG 102 +PR + N ++P PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 29.3 bits (64), Expect = 2.9 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 227 SPRRAYLPNTHRSPPPGAEPGVRDGGLRYARGGGRPACLRDG 102 +PR + N ++P PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 29.3 bits (64), Expect = 2.9 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +3 Query: 69 RLAPPRRVQSHPIAQTGRPPATARISEASITNPGLRTRRR 188 R PP V+ HP + RPPA A I+ P R RRR Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163
>CD320_HUMAN (Q9NPF0) CD320 antigen precursor (8D6 antigen) (FDC-signaling| molecule 8D6) (FDC-SM-8D6) Length = 282 Score = 28.9 bits (63), Expect = 3.7 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Frame = +3 Query: 9 STVVSLPICLISITLARTHTRLAPPRRVQSHPIA----------QTGRPPATARISEASI 158 +T + P+ L S+T R T + PP ++S P Q+G P A I+ A++ Sbjct: 178 ATTMGPPVTLESVTSLRNATTMGPPVTLESVPSVGNATSSSAGDQSGSPTAYGVIAAAAV 237 Query: 159 TNPGLRT 179 + L T Sbjct: 238 LSASLVT 244
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 28.5 bits (62), Expect = 4.9 Identities = 21/58 (36%), Positives = 24/58 (41%) Frame = -3 Query: 188 PPPGAEPGVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACESYGDQTDREGDD 15 P PG P R GG A GG P DG G S ++ Q G R + D DD Sbjct: 413 PRPGGAP--RPGGFGGAPGG-MPVPGADGRGDQSKKKRQKGRRTVDFQADGPRGRSDD 467
>COTE1_HUMAN (P81408) COTE1 protein| Length = 669 Score = 28.5 bits (62), Expect = 4.9 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 6 ISTVVSLPICLISITLARTHTRLAPPRRVQS--HPIAQTGRPPA 131 I T+ ++ C+ +L HT+LAP R V P+ T PPA Sbjct: 187 ICTLSAIVCCIQIFSLDLVHTQLAPERSVSGPLGPLGCTSPPPA 230
>U269_DEIRA (Q9RXP1) Protein DR0269| Length = 322 Score = 28.5 bits (62), Expect = 4.9 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -3 Query: 167 GVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACESYGDQT---DREGDDSG 9 G R G RGG RP R G G D R + G R E G+++ DR GD G Sbjct: 138 GFRGGDRGGDRGGFRPREDRGGFGGD---RDRGGFRPREDRGERSFGGDRGGDRGG 190
>RPOD_STRAU (P27785) RNA polymerase sigma factor rpoD| Length = 317 Score = 28.1 bits (61), Expect = 6.4 Identities = 23/68 (33%), Positives = 30/68 (44%) Frame = -3 Query: 206 PNTHRSPPPGAEPGVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACESYGDQTDR 27 P T + GA P D +Y R GR L +D ARR +AG+ A E G D Sbjct: 4 PRTRGAESGGAGPSA-DLFRQYLREIGRIPLLTAAEEVDLARRVEAGLFAEEKLGGAADL 62 Query: 26 EGDDSGDL 3 + + DL Sbjct: 63 DSQLAVDL 70
>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 301 Score = 28.1 bits (61), Expect = 6.4 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Frame = -3 Query: 197 HRSPPPGAEPGVRDGGLRYARGGGRPACLRDGMGLD--SARRSQAGVRACESYGDQTDRE 24 H P A GV DG LR GRP + DG +D G R GD E Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTIDPEDVLGPATGGRKLVVIGDTETTE 216 Query: 23 G 21 G Sbjct: 217 G 217
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 28.1 bits (61), Expect = 6.4 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Frame = -3 Query: 224 PRRAYLPNTHRSPPPG-AEPGVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACES 48 P+ A P PPG A PG AR GG P +R L RR + G +A Sbjct: 736 PKPAEAPMPAEPAPPGPASPGGAPEPPAAARAGGSPTAVRS--ILTKERRPEGGYKAV-W 792 Query: 47 YGDQTDREGD 18 +G+ E D Sbjct: 793 FGEDIGTEAD 802
>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)| Length = 504 Score = 28.1 bits (61), Expect = 6.4 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = -3 Query: 140 ARGGGRPACLRDGMGLDSARRSQAGVRAC 54 ARGG P+ +R G+GL AR S AC Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467
>RESIL_DROME (Q9V7U0) Pro-resilin precursor| Length = 620 Score = 27.7 bits (60), Expect = 8.3 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Frame = -3 Query: 179 GAEPGVRD---GGLRYARGGGRPAC----LRDGMGLDSARRSQAGVRACESYGDQTDREG 21 G PG +D G R GGRP +DG G S R Q G G D +G Sbjct: 556 GGRPGGQDLGRDGYSSGRPGGRPGGNGQDSQDGQGYSSGRPGQGGRNGFGPGGQNGDNDG 615
>OST6_HUMAN (Q96QI5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC| 2.8.2.23) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 6) (Heparan sulfate 3-O-sulfotransferase 6) (h3-OST-6) Length = 342 Score = 27.7 bits (60), Expect = 8.3 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 149 LRYARGGGRPACLRDGMGLDSARRSQAGVRACESY 45 L+ A+GG RP CL G R QA VR + + Sbjct: 289 LKKAQGGSRPRCLGKSKGRPHPRVPQALVRRLQEF 323
>DOCK6_HUMAN (Q96HP0) Dedicator of cytokinesis protein 6| Length = 2047 Score = 27.7 bits (60), Expect = 8.3 Identities = 17/33 (51%), Positives = 17/33 (51%) Frame = -3 Query: 209 LPNTHRSPPPGAEPGVRDGGLRYARGGGRPACL 111 LP T S P GA P V ARG GRPA L Sbjct: 842 LPGTEPSLPDGAPP-VTVQAATLARGSGRPASL 873
>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)| Length = 694 Score = 27.7 bits (60), Expect = 8.3 Identities = 24/68 (35%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Frame = -3 Query: 224 PRRAYLPNTHRSPPPGAEPGVRDGGLRYARGGGR----------PACLRDGMGLDSARRS 75 PRR P PP G+ G G RGGGR PA R G G AR Sbjct: 164 PRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPA--RGGGGGGKARPP 221 Query: 74 QAGVRACE 51 G CE Sbjct: 222 GGGAAPCE 229
>K6PF_CAEEL (Q27483) Probable 6-phosphofructokinase (EC 2.7.1.11)| (Phosphofructokinase) (Phosphohexokinase) Length = 756 Score = 27.7 bits (60), Expect = 8.3 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -3 Query: 167 GVRDGGLRYARGGGRPACLRDGMGLDSARRSQAGVRACESYGDQ 36 GVR L Y++ GG P+C MG+ R+ G+ GD+ Sbjct: 656 GVRITNLGYSQLGGHPSCFDRQMGIRMGVRAFEGIVNPVKMGDR 699 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,292,772 Number of Sequences: 219361 Number of extensions: 744651 Number of successful extensions: 2647 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2476 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2639 length of database: 80,573,946 effective HSP length: 53 effective length of database: 68,947,813 effective search space used: 1654747512 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
