ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40d01 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 95.9 bits (237), Expect = 5e-20 Identities = 45/77 (58%), Positives = 59/77 (76%) Frame = +3 Query: 240 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 419 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F +EATE FFA T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRL 76 Query: 420 FQSKDAGLRRMVYLMIR 470 FQS D LRRM YL I+ Sbjct: 77 FQSNDQTLRRMCYLTIK 93
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 95.5 bits (236), Expect = 6e-20 Identities = 45/77 (58%), Positives = 58/77 (75%) Frame = +3 Query: 240 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 419 +PF +EK AVLQEAR+F++ ++ RRC ++TK+LYLLNQG+ F EATE FFA T+L Sbjct: 17 NPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRL 76 Query: 420 FQSKDAGLRRMVYLMIR 470 FQS D LRRM YL I+ Sbjct: 77 FQSNDQTLRRMCYLTIK 93
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 93.2 bits (230), Expect = 3e-19 Identities = 44/77 (57%), Positives = 57/77 (74%) Frame = +3 Query: 240 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 419 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE FFA TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 420 FQSKDAGLRRMVYLMIR 470 FQS D LRRM YL I+ Sbjct: 77 FQSNDPTLRRMCYLTIK 93
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 93.2 bits (230), Expect = 3e-19 Identities = 44/77 (57%), Positives = 57/77 (74%) Frame = +3 Query: 240 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 419 +PF +EK AVLQEARVF++ ++ R+C ++TK+LYL+NQG+ EATE FFA TKL Sbjct: 17 NPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKL 76 Query: 420 FQSKDAGLRRMVYLMIR 470 FQS D LRRM YL I+ Sbjct: 77 FQSNDPTLRRMCYLTIK 93
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 88.2 bits (217), Expect = 1e-17 Identities = 37/72 (51%), Positives = 57/72 (79%) Frame = +3 Query: 255 IEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 434 ++K +VLQEAR F++ ++AR+CC +++KL+Y++ QG++ + EATE FF TKL+QSKD Sbjct: 18 LDKTSVLQEARAFNETPINARKCCFILSKLIYIIQQGESIGRTEATEAFFGVTKLWQSKD 77 Query: 435 AGLRRMVYLMIR 470 LRRMVYL ++ Sbjct: 78 VSLRRMVYLAVK 89
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 65.9 bits (159), Expect = 5e-11 Identities = 30/77 (38%), Positives = 50/77 (64%) Frame = +3 Query: 240 SPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKL 419 S F + + V Q+AR F+ + R+ ++++K+ YL+ G+ F + +ATE+FF TKL Sbjct: 13 SIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATELFFGITKL 72 Query: 420 FQSKDAGLRRMVYLMIR 470 FQ KD LR+ VY++I+ Sbjct: 73 FQHKDPSLRQFVYIIIK 89
>COPG_YEAST (P32074) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 935 Score = 57.0 bits (136), Expect = 2e-08 Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 1/72 (1%) Frame = +3 Query: 258 EKGAVLQEA-RVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKD 434 +K + Q+ F++ ++++RC +I++LL LL QG+TF + EAT +FF+ +KLFQ ++ Sbjct: 19 DKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQN 78 Query: 435 AGLRRMVYLMIR 470 LR+ VYL I+ Sbjct: 79 DPLRQAVYLAIK 90
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +1 Query: 49 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 135 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +1 Query: 49 SSLAKPRDKDSRELSRRPAPPPFSRHSGR 135 SS PR +DSR RP PP R GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>MTB1_BRUAB (P0C116) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 323 ASPRIKLRVVEDAGLLQDGTLLDAEERR 240 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>MTB1_BRUA2 (Q2YMK2) Modification methylase BabI (EC 2.1.1.72)| (Adenine-specific methyltransferase BabI) (M.BabI) (M.CcrMI) Length = 377 Score = 28.9 bits (63), Expect = 6.9 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -3 Query: 323 ASPRIKLRVVEDAGLLQDGTLLDAEERR 240 A PR+ V +AGLL+ GT+L E RR Sbjct: 284 AEPRVAFTSVMEAGLLRPGTVLCDERRR 311
>ST32C_HUMAN (Q86UX6) Serine/threonine-protein kinase 32C (EC 2.7.11.1) (PKE)| (YANK3) Length = 486 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +1 Query: 73 KDSRELSRRPAPPPFSRHSGRPGRTIRARIAPPQQGP 183 K S++L R P P P SR + P R A P GP Sbjct: 442 KRSQDLPREPLPAPESRDAAEPVEDEAERSALPMCGP 478
>MUTS_NEIMB (Q9JX94) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 407 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 246 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>MUTS_NEIMA (Q9JWT7) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 407 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 246 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125
>MUTS_NEIG1 (Q5F5J4) DNA mismatch repair protein mutS| Length = 864 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -3 Query: 407 SEEYLCGLY-LGKGVTLVEQI*KLGDHLAASPRIKLRVVEDAGLLQDGTLLDAEE 246 +E+YL L LGK V + EQ+ ++G R +R+V G L D LL+ +E Sbjct: 72 AEQYLARLVKLGKSVAICEQVGEVGAGKGPVERKVVRIV-TPGTLTDSALLEDKE 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,597,186 Number of Sequences: 219361 Number of extensions: 926635 Number of successful extensions: 3229 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3068 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3214 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
