ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABI1_HUMAN (Q8IZP0) Abl interactor 1 (Abelson interactor 1) (Abi... 29 2.8
2RAVR1_HUMAN (Q8IY67) Protein raver-1 29 3.7

>ABI1_HUMAN (Q8IZP0) Abl interactor 1 (Abelson interactor 1) (Abi-1) (Spectrin|
           SH3 domain-binding protein 1) (Eps8 SH3 domain-binding
           protein) (Eps8-binding protein) (e3B1) (Nap1-binding
           protein) (Nap1BP) (Abl-binding protein 4) (AblBP4)
          Length = 507

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 251 SSSPRTPLTSFSSLGGARTWXXXXXXXXXRPLLVARPSPASLGRRIVSTPTASAA 87
           +S  + P T   S GG+ +           P+ V  PSP ++G   +S P  S A
Sbjct: 229 ASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPENISVPPPSGA 283



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>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -3

Query: 161 PLLVARPSPASLGRRIVSTPTASAATRR 78
           P    RPSPA       STP ASAAT R
Sbjct: 576 PTCCPRPSPAQKAAMWASTPRASAATTR 603


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,315,935
Number of Sequences: 219361
Number of extensions: 244987
Number of successful extensions: 921
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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