ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40c10 |
|---|---|
| Clone Library Name | barley_pub |
>GDF6_MOUSE (P43028) Growth/differentiation factor 6 precursor (GDF-6)| (Growth/differentiation factor 16) Length = 454 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +3 Query: 30 TGSARGGDWLMEPGHRRRRRAHTADEAAAVLRKAWCRLRLSARDPARV 173 +GS G WL PG RRRR A + +K+ RLR S R P V Sbjct: 316 SGSPDAGSWLPSPGRRRRRTAFASRHGKRHGKKS--RLRCS-RKPLHV 360
>WFDC1_MOUSE (Q9ESH5) WAP four-disulfide core domain protein 1 precursor| (Prostate stromal protein ps20) (ps20 growth inhibitor) Length = 211 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%) Frame = -2 Query: 125 PQHRRCLVGGVR-------PPPAAMAWLHQPIASPRAAG 30 P+HRRC G PPP + WL QP PR G Sbjct: 81 PRHRRCCYNGCAYACLEAVPPPPVLDWLVQP--KPRWLG 117
>WFDC1_RAT (O70280) WAP four-disulfide core domain protein 1 precursor| (Prostate stromal protein ps20) (ps20 growth inhibitor) Length = 212 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%) Frame = -2 Query: 125 PQHRRCLVGGVR-------PPPAAMAWLHQPIASPRAAG 30 P+HRRC G PPP + WL QP PR G Sbjct: 82 PRHRRCCYNGCAYACLEAVPPPPVLDWLVQP--KPRWLG 118
>WFDC1_HUMAN (Q9HC57) WAP four-disulfide core domain protein 1 precursor| (Prostate stromal protein ps20) (ps20 growth inhibitor) Length = 220 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 7/39 (17%) Frame = -2 Query: 125 PQHRRCLVGGVR-------PPPAAMAWLHQPIASPRAAG 30 P+HRRC G PPP + WL QP PR G Sbjct: 90 PRHRRCCYNGCAYACLEAVPPPPVLDWLVQP--KPRWLG 126
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -3 Query: 184 SHGGTRAGSRADRRSRHHAFRSTAAASSAVCALRRRRWPGSINQSPPRA 38 S+ G+R+ SR+ RRSR + RS+ + S ++ R R S +S R+ Sbjct: 190 SYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRS 238
>TNI3K_HUMAN (Q59H18) Serine/threonine-protein kinase TNNI3K (EC 2.7.11.1)| (TNNI3-interacting kinase) (Cardiac ankyrin repeat kinase) Length = 936 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/57 (29%), Positives = 22/57 (38%) Frame = +3 Query: 165 ARVPPWDAVVLTAASPEQXXXXXXXXXXXXXXXXFPPSTAALAVPDPDGARIGSGAA 335 AR WD V +TAA +Q P DP GA+IG+G + Sbjct: 32 ARGEFWDIVAITAADEKQELAYNQQLSEKLKRKELPLGVQYHVFVDPAGAKIGNGGS 88
>FPGT_HUMAN (O14772) Fucose-1-phosphate guanylyltransferase (EC 2.7.7.30)| (GDP-L-fucose pyrophosphorylase) (GDP-L-fucose diphosphorylase) Length = 594 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/57 (29%), Positives = 22/57 (38%) Frame = +3 Query: 165 ARVPPWDAVVLTAASPEQXXXXXXXXXXXXXXXXFPPSTAALAVPDPDGARIGSGAA 335 AR WD V +TAA +Q P DP GA+IG+G + Sbjct: 32 ARGEFWDIVAITAADEKQELAYNQQLSEKLKRKELPLGVQYHVFVDPAGAKIGNGGS 88
>GDF6_RAT (Q6HA10) Growth/differentiation factor 6 precursor (GDF-6)| (Growth/differentiation factor 16) Length = 452 Score = 28.5 bits (62), Expect = 4.3 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = +3 Query: 30 TGSARGGDWLMEPGHRRRRRAHTADEAAAVLRKAWCRLRLSARDPARV 173 +G+ G WL PG RRRR A ++ +K+ RLR S R P V Sbjct: 314 SGAPDAGSWLPSPGRRRRRTALSSRHGKRHGKKS--RLRCS-RKPLHV 358
>THYG_BOVIN (P01267) Thyroglobulin precursor| Length = 2769 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = -3 Query: 214 SGLAAVSTTASHGGTRAGSRADRRSRHHAFRSTAAASSAVCALRRRRWPGSINQSPPRA 38 +G A + AS G AG R R +RS +C+++RRRW Q PRA Sbjct: 1225 AGGAILCERASGLGAAAGQRCQLRCSQ-GYRSAFPPEPLLCSVQRRRWESRPPQ--PRA 1280
>GLNE_BORPE (Q7VYQ0) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 941 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 90 AHTADEAAAVLRKAWCRLRLSARDPARVPP 179 A A +A LR+A +LRL D ARVPP Sbjct: 883 ALAAGDAYRTLRRAQHQLRLKGVDKARVPP 912
>GLNE_BORPA (Q7W993) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 941 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 90 AHTADEAAAVLRKAWCRLRLSARDPARVPP 179 A A +A LR+A +LRL D ARVPP Sbjct: 883 ALAAGDAYRTLRRAQHQLRLKGVDKARVPP 912
>GLNE_BORBR (Q7WHH4) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 941 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 90 AHTADEAAAVLRKAWCRLRLSARDPARVPP 179 A A +A LR+A +LRL D ARVPP Sbjct: 883 ALAAGDAYRTLRRAQHQLRLKGVDKARVPP 912
>GPDM_SCHPO (O14400) Glycerol-3-phosphate dehydrogenase, mitochondrial| precursor (EC 1.1.99.5) (GPD-M) (GPDH-M) Length = 649 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 129 AWCRLRLSARDPARVPP 179 AWC +R RDP+ VPP Sbjct: 398 AWCGIRPLVRDPSTVPP 414
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 27.3 bits (59), Expect = 9.7 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 8/50 (16%) Frame = -3 Query: 214 SGLAAVSTT--------ASHGGTRAGSRADRRSRHHAFRSTAAASSAVCA 89 +GL A +TT A+ GGT AG+ AD + A AAA++A A Sbjct: 272 AGLEAAATTTAAPEAGVAAAGGTGAGAAADAAASSSAPSLVAAAAAAAAA 321
>LIMK1_DROME (Q8IR79) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (dLIMK)| Length = 1257 Score = 27.3 bits (59), Expect = 9.7 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = -3 Query: 205 AAVSTTASHGGTRAGSRADRRSRHHAFRSTAAASSAVCALRRRRWPGSINQSPP 44 AA +++ G AG+ A + H S+ +SAV RRR P SPP Sbjct: 1200 AATASSVGGAGCAAGTAAGSLNGHRTIGSSGTPNSAVGERRRRAAP-----SPP 1248
>NORR1_RALEU (Q9K4V0) Nitric oxide reductase transcription regulator norR1| Length = 514 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -3 Query: 124 RSTAAASSAVCALRRRRWPGSINQ 53 RS +++A ALRR RWPG++ + Sbjct: 383 RSLRLSAAAQDALRRYRWPGNVRE 406 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,858,265 Number of Sequences: 219361 Number of extensions: 459075 Number of successful extensions: 1947 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1939 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
