ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40c05 |
|---|---|
| Clone Library Name | barley_pub |
>VPP1_MOUSE (Q9Z1G4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 839 Score = 80.1 bits (196), Expect = 3e-15 Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%) Frame = +2 Query: 203 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVS 382 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC E+ Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 383 RKLRFFKEQMSKAGIQVPPM---PITETPLDFDDME 481 RKLRF ++++ KA I + P P D D+E Sbjct: 63 RKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98
>VPP1_BOVIN (Q29466) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 838 Score = 80.1 bits (196), Expect = 3e-15 Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%) Frame = +2 Query: 203 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVS 382 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC E+ Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 383 RKLRFFKEQMSKAGIQVPPM---PITETPLDFDDME 481 RKLRF ++++ KA I + P P D D+E Sbjct: 63 RKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98
>VPP1_PONPY (Q5R422) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) Length = 837 Score = 80.1 bits (196), Expect = 3e-15 Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%) Frame = +2 Query: 203 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVS 382 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC E+ Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 383 RKLRFFKEQMSKAGIQVPPM---PITETPLDFDDME 481 RKLRF ++++ KA I + P P D D+E Sbjct: 63 RKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98
>VPP1_HUMAN (Q93050) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 837 Score = 80.1 bits (196), Expect = 3e-15 Identities = 40/96 (41%), Positives = 61/96 (63%), Gaps = 3/96 (3%) Frame = +2 Query: 203 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVS 382 +L RSE M L Q+ + +E+A+ VS LG+LG +QF+DLN D + FQR + +++RC E+ Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 383 RKLRFFKEQMSKAGIQVPPM---PITETPLDFDDME 481 RKLRF ++++ KA I + P P D D+E Sbjct: 63 RKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98
>VPP3_HUMAN (Q13488) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 3 (V-ATPase 116-kDa isoform a3) (Osteoclastic proton pump 116 kDa subunit) (OC-116 kDa) (OC116) (T-cell immune regulator 1) (T cell immune response cDNA7 protein) (TIRC7) Length = 830 Score = 78.2 bits (191), Expect = 1e-14 Identities = 33/78 (42%), Positives = 54/78 (69%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 + RSE + L+Q+ +PT +A+ VS LG+LGL++F+DLNA S FQR + + RC E+ + Sbjct: 4 MFRSEEVALVQLFLPTAAAYTCVSRLGELGLVEFRDLNASVSAFQRRFVVDVWRCEELEK 63 Query: 386 KLRFFKEQMSKAGIQVPP 439 F +E++ +AG+ +PP Sbjct: 64 TFTFLQEEVRRAGLVLPP 81
>VPP1_RAT (P25286) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase su Length = 838 Score = 77.0 bits (188), Expect = 2e-14 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 3/96 (3%) Frame = +2 Query: 203 DLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVS 382 +L RSE M L Q+ + +E+A+ VS L +LG +QF+DLN D + FQR + +++RC E+ Sbjct: 3 ELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMD 62 Query: 383 RKLRFFKEQMSKAGIQVPPM---PITETPLDFDDME 481 RKLRF ++++ KA I + P P D D+E Sbjct: 63 RKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLE 98
>VPP1_CAEEL (P30628) Probable vacuolar proton translocating ATPase 116 kDa| subunit a (Uncoordinated protein 32) Length = 905 Score = 76.6 bits (187), Expect = 3e-14 Identities = 36/89 (40%), Positives = 58/89 (65%) Frame = +2 Query: 194 PSMDLMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCA 373 P + RSE M L Q+ + +++++ V+ LG+LGL+QF+DLN D S FQR Y +++RC Sbjct: 12 PQPGIYRSEQMCLAQLYLQSDASYQCVAELGELGLVQFRDLNPDVSSFQRKYVNEVRRCD 71 Query: 374 EVSRKLRFFKEQMSKAGIQVPPMPITETP 460 E+ RKLR+ + ++ K Q+P + E P Sbjct: 72 EMERKLRYLEREIKKD--QIPMLDTGENP 98
>VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform) Length = 833 Score = 75.5 bits (184), Expect = 7e-14 Identities = 37/86 (43%), Positives = 55/86 (63%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 + RSE M L QV + E+A+ V+ LG+LGL+QFKDLNA+ + FQR + +++RC + R Sbjct: 4 VFRSEEMCLSQVFLQVEAAYCCVAELGELGLVQFKDLNANVNSFQRKFVNEVRRCESLER 63 Query: 386 KLRFFKEQMSKAGIQVPPMPITETPL 463 LRF +++M + P ETPL Sbjct: 64 ILRFLEDEMQNEILIQVPEKDAETPL 89
>VPP4_HUMAN (Q9HBG4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 4 (V-ATPase 116-kDa isoform a4) (Vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform) Length = 840 Score = 68.9 bits (167), Expect = 6e-12 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 2/94 (2%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 + RSE M L Q+ + E+A+ V+ LG+LGL+QFKDLN + + FQR + +++RC + R Sbjct: 4 VFRSEEMCLSQLFLQVEAAYCCVAELGELGLVQFKDLNMNVNSFQRKFVNEVRRCESLER 63 Query: 386 KLRFFKEQMSKAGI--QVPPMPITETPLDFDDME 481 LRF +++M + + P+T P + +E Sbjct: 64 ILRFLEDEMQNEIVVQLLEKSPLTPLPREMITLE 97
>VPP2_MOUSE (P15920) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (Immune suppressor factor J6B7) Length = 856 Score = 67.4 bits (163), Expect = 2e-11 Identities = 31/77 (40%), Positives = 53/77 (68%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 L RSE+M L Q+ + + +A+ +S LG+ GL+QF+DLN + S FQR + ++KRC E+ R Sbjct: 4 LFRSESMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELER 63 Query: 386 KLRFFKEQMSKAGIQVP 436 L + +++++A I +P Sbjct: 64 ILVYLVQEITRADIPLP 80
>VPP2_HUMAN (Q9Y487) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 2 (V-ATPase 116-kDa isoform a2) (TJ6) Length = 856 Score = 67.0 bits (162), Expect = 2e-11 Identities = 31/77 (40%), Positives = 52/77 (67%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 L RSE M L Q+ + + +A+ +S LG+ GL+QF+DLN + S FQR + ++KRC E+ R Sbjct: 4 LFRSETMCLAQLFLQSGTAYECLSALGEKGLVQFRDLNQNVSSFQRKFVGEVKRCEELER 63 Query: 386 KLRFFKEQMSKAGIQVP 436 L + +++++A I +P Sbjct: 64 ILVYLVQEINRADIPLP 80
>VPP2_BOVIN (O97681) Vacuolar proton translocating ATPase 116 kDa subunit A| isoform 2 (V-ATPase 116-kDa isoform a2) Length = 854 Score = 66.2 bits (160), Expect = 4e-11 Identities = 30/77 (38%), Positives = 52/77 (67%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 L RSE M L Q+ + + +A+ +S LG+ GL++F+DLN + S FQR + ++KRC E+ R Sbjct: 4 LFRSETMCLAQLFLQSGTAYECLSVLGEKGLVEFRDLNQNVSSFQRKFVGEVKRCEELER 63 Query: 386 KLRFFKEQMSKAGIQVP 436 L + +++++A I +P Sbjct: 64 ILAYLVQEINRADIPLP 80
>VPH1_NEUCR (Q01290) Vacuolar ATP synthase 98 kDa subunit (Vacuolar ATPase 98| kDa subunit) Length = 856 Score = 65.9 bits (159), Expect = 5e-11 Identities = 32/72 (44%), Positives = 45/72 (62%) Frame = +2 Query: 212 RSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSRKL 391 RS M ++Q+ I E + LG+LGL+ F+DLN++ S FQR + I+R V R+L Sbjct: 10 RSADMSMVQLYISNEIGREVCNALGELGLVHFRDLNSELSAFQRAFTQDIRRLDNVERQL 69 Query: 392 RFFKEQMSKAGI 427 R+F QM KAGI Sbjct: 70 RYFHSQMEKAGI 81
>VPH1_YEAST (P32563) Vacuolar ATP synthase subunit a, vacuolar isoform (EC| 3.6.3.14) (V-ATPase a subunit) (Vacuolar proton pump a subunit) (V-ATPase 95 kDa subunit) (Vacuolar pH protein 1) Length = 839 Score = 58.9 bits (141), Expect = 7e-09 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 + RS M L+Q IP E + + LG LGL+QF+DLN+ FQRT+ +I+R V R Sbjct: 7 IFRSAEMALVQFYIPQEISRDSAYTLGQLGLVQFRDLNSKVRAFQRTFVNEIRRLDNVER 66 Query: 386 KLRFFKEQMSKAGIQV 433 + R+F + K I++ Sbjct: 67 QYRYFYSLLKKHDIKL 82
>VPH1_SCHPO (O13742) Probable vacuolar ATP synthase 91 kDa subunit (Vacuolar| ATPase 91 kDa subunit) Length = 805 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/55 (41%), Positives = 33/55 (60%) Frame = +2 Query: 272 VSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSRKLRFFKEQMSKAGIQVP 436 +S LG+L I FKDLN D FQR++ +I+R + R LR+ ++ GI VP Sbjct: 1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVP 55
>STV1_YEAST (P37296) Vacuolar ATP synthase subunit a, Golgi isoform (EC| 3.6.3.14) (V-ATPase 101 kDa subunit) (V-ATPase subunit AC115) (Similar to VPH1 protein 1) Length = 890 Score = 45.4 bits (106), Expect = 8e-05 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +2 Query: 206 LMRSEAMQLLQVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSR 385 + RS M +Q+ IP E LG + + DLN D + FQR Y Q++R EV R Sbjct: 7 IFRSADMTYVQLYIPLEVIREVTFLLGKMSVFMVMDLNKDLTAFQRGYVNQLRRFDEVER 66 Query: 386 KLRFFKEQMSK 418 + F E + K Sbjct: 67 MVGFLNEVVEK 77
>FLCN_BOVIN (Q3B7L5) Folliculin| Length = 579 Score = 30.4 bits (67), Expect = 2.5 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -1 Query: 334 RAFVCVEVFELDEAQIAEVGDGEVRGLGGDND---LQELHRLRPHQIHRGAAAPSAA 173 R C EV Q A GDG RG D + +Q R+R H GA+A S++ Sbjct: 17 RTLFCTEVLHAPLPQGAGSGDGAGRGEPADEEEGGIQMSSRIRAHSPAEGASAESSS 73
>ARHG2_MOUSE (Q60875) Rho/Rac guanine nucleotide exchange factor 2 (Lymphoid| blast crisis-like 1) (LBC'S first cousin) (Oncogene LFC) (RHOBIN) Length = 596 Score = 30.0 bits (66), Expect = 3.3 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = +2 Query: 236 QVIIPTESAHLAVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKRCAEVSRKLRFFKE 406 Q + P + + + LGDL + QF NA++ ++TY+ + C+ ++ L+ +KE Sbjct: 304 QALCPGSTRNFVIHRLGDLLISQFSGSNAEQ--MRKTYS---EFCSRHTKALKLYKE 355
>SYA_RALSO (Q8Y193) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 884 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +2 Query: 293 GLIQFKD--LNADKSPFQRTYAAQIKRCAEVSRK 388 G++QFKD L DK P+ R AA ++RC K Sbjct: 41 GMVQFKDVFLGTDKRPYVR--AASVQRCLRAGGK 72
>GIDA_XYLFT (Q87DB3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = +2 Query: 269 AVSHLGDLGLIQFKDLNADKSPFQRT---------YAAQIKRCAEVSRKLRFFKEQM 412 A++H D IQ++ LNA K P R Y A I++ E +L F+ ++ Sbjct: 70 AMAHAADAAGIQWRTLNASKGPAVRATRCQADRSLYRAAIRQMIEGQARLNIFQAEV 126
>GIDA_XYLFA (Q9PBN4) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 9/57 (15%) Frame = +2 Query: 269 AVSHLGDLGLIQFKDLNADKSPFQRT---------YAAQIKRCAEVSRKLRFFKEQM 412 A++H D IQ++ LNA K P R Y A I++ E +L F+ ++ Sbjct: 70 AMAHAADAAGIQWRTLNASKGPAVRATRCQADRALYRAAIRQMIEGQARLNIFQAEV 126
>PSB4_SCHPO (Q9USQ9) Probable proteasome subunit beta type 4 (EC 3.4.25.1)| Length = 262 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -1 Query: 361 DLCSVGALKRAFVCVEVFELDEAQIAEVGDGEVRGLGGD-NDLQELHRL 218 +L S G+L R + D ++ +VGD + G GGD +D Q++ RL Sbjct: 61 NLASYGSLARFY--------DVERLTKVGDNTIVGAGGDISDYQQIQRL 101
>GIDA_XANOR (Q5H6D9) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 269 AVSHLGDLGLIQFKDLNADKSPFQRTYAAQIKR 367 A++H DL IQ++ LNA K P R Q R Sbjct: 70 AMAHAADLAGIQWRTLNASKGPAVRATRCQADR 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,428,388 Number of Sequences: 219361 Number of extensions: 931781 Number of successful extensions: 3138 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3137 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
