ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184948.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.99
2gb|AF550415.2| Citrobacter freundii plasmid pCTX-M3, complete se... 42 0.99
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.99
4ref|XM_848640.1| PREDICTED: Canis familiaris similar to dachsous... 42 0.99
5gb|AY422214.1| Erwinia amylovora strain LebB66 plasmid pEL60 com... 42 0.99
6gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A... 42 0.99
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
8dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, com... 42 0.99
9dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.99
10gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, comp... 40 3.9
11dbj|AK138487.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 3.9
12gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, com... 40 3.9
13gb|AF294265.1|AF294265 Mus musculus galanin receptor-1 (Galr1) g... 40 3.9
14gb|AC136605.2| Homo sapiens chromosome 5 clone RP11-1380A14, com... 40 3.9
15gb|AY107095.1| Zea mays PCO131316 mRNA sequence 40 3.9
16gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, compl... 40 3.9
17gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, comple... 40 3.9

>ref|NM_184948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1341

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 64  cccgcagcgccagcgccagcg 84
           |||||||||||||||||||||
Sbjct: 268 cccgcagcgccagcgccagcg 248



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>gb|AF550415.2| Citrobacter freundii plasmid pCTX-M3, complete sequence
          Length = 89468

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    catctcccgcagcgccagcgc 79
             |||||||||||||||||||||
Sbjct: 16345 catctcccgcagcgccagcgc 16325



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 64       cccgcagcgccagcgccagcg 84
                |||||||||||||||||||||
Sbjct: 20233525 cccgcagcgccagcgccagcg 20233545



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>ref|XM_848640.1| PREDICTED: Canis familiaris similar to dachsous 1 precursor
            (LOC476837), mRNA
          Length = 10065

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 61   tctcccgcagcgccagcgccagcgg 85
            ||||| |||||||||||||||||||
Sbjct: 4486 tctccggcagcgccagcgccagcgg 4462



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>gb|AY422214.1| Erwinia amylovora strain LebB66 plasmid pEL60 complete sequence
          Length = 60145

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    catctcccgcagcgccagcgc 79
             |||||||||||||||||||||
Sbjct: 12904 catctcccgcagcgccagcgc 12884



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>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
             sequence
          Length = 156929

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    cccgcagcgccagcgccagcg 84
             |||||||||||||||||||||
Sbjct: 28832 cccgcagcgccagcgccagcg 28852



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 64       cccgcagcgccagcgccagcg 84
                |||||||||||||||||||||
Sbjct: 20226554 cccgcagcgccagcgccagcg 20226574



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>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds
          Length = 1471

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 64  cccgcagcgccagcgccagcg 84
           |||||||||||||||||||||
Sbjct: 164 cccgcagcgccagcgccagcg 144



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>dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P13, full
           insert sequence
          Length = 1929

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 64  cccgcagcgccagcgccagcg 84
           |||||||||||||||||||||
Sbjct: 248 cccgcagcgccagcgccagcg 228



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>gb|AC117825.9| Mus musculus chromosome 18, clone RP24-80J4, complete sequence
          Length = 198559

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ccgcagcgccagcgccagcg 84
             ||||||||||||||||||||
Sbjct: 71493 ccgcagcgccagcgccagcg 71512



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>dbj|AK138487.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
          enriched library, clone:A330038E02 product:galanin
          receptor 1, full insert sequence
          Length = 2571

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 65 ccgcagcgccagcgccagcg 84
          ||||||||||||||||||||
Sbjct: 28 ccgcagcgccagcgccagcg 47



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>gb|AC157548.7| Mus musculus chromosome 18, clone RP24-310H1, complete sequence
          Length = 177509

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgcagcgccagcgccagcg 84
              ||||||||||||||||||||
Sbjct: 156194 ccgcagcgccagcgccagcg 156175



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>gb|AF294265.1|AF294265 Mus musculus galanin receptor-1 (Galr1) gene, promoter and 5' UTR
          Length = 3918

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   ccgcagcgccagcgccagcg 84
            ||||||||||||||||||||
Sbjct: 3271 ccgcagcgccagcgccagcg 3290



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>gb|AC136605.2| Homo sapiens chromosome 5 clone RP11-1380A14, complete sequence
          Length = 171395

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tccccgcacacccaccttct 46
             ||||||||||||||||||||
Sbjct: 11466 tccccgcacacccaccttct 11447



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>gb|AY107095.1| Zea mays PCO131316 mRNA sequence
          Length = 1042

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 65  ccgcagcgccagcgccagcg 84
           ||||||||||||||||||||
Sbjct: 176 ccgcagcgccagcgccagcg 157



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>gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, complete sequence
          Length = 179443

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     tccccgcacacccaccttct 46
              ||||||||||||||||||||
Sbjct: 137770 tccccgcacacccaccttct 137789



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>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence
          Length = 184981

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   tccccgcacacccaccttct 46
            ||||||||||||||||||||
Sbjct: 6996 tccccgcacacccaccttct 7015


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,017,076
Number of Sequences: 3902068
Number of extensions: 1017076
Number of successful extensions: 22864
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22822
Number of HSP's gapped (non-prelim): 42
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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