ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40b06 |
|---|---|
| Clone Library Name | barley_pub |
>RSU1_HUMAN (Q15404) Ras suppressor protein 1 (Rsu-1) (RSP-1)| Length = 276 Score = 36.2 bits (82), Expect = 0.043 Identities = 15/41 (36%), Positives = 27/41 (65%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDLG 466 +PP +A+L L L +NN + + +P Q+S L +++H +LG Sbjct: 54 VPPNIAELKNLEVLNFFNNQI-EELPTQISSLQKLKHLNLG 93
>RSU1_MOUSE (Q01730) Ras suppressor protein 1 (Rsu-1) (RSP-1)| Length = 276 Score = 35.8 bits (81), Expect = 0.056 Identities = 15/41 (36%), Positives = 27/41 (65%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDLG 466 +PP +A+L L L +NN + + +P Q+S L +++H +LG Sbjct: 54 VPPNVAELKNLEVLNFFNNQI-EELPTQISSLQKLKHLNLG 93
>LAP1_DROME (Q9V780) Protein lap1| Length = 849 Score = 33.5 bits (75), Expect = 0.28 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 +PPQL GL L + +NNL ++IP + L ++QH DL Sbjct: 55 LPPQLFYCQGLRVLHVNSNNL-ESIPQAIGSLRQLQHLDL 93
>RPK1_IPONI (P93194) Receptor-like protein kinase precursor (EC 2.7.11.1)| Length = 1109 Score = 33.5 bits (75), Expect = 0.28 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 IPP L +L + + L +N L+ +IP +L L +++H +L Sbjct: 515 IPPSLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNL 554
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 IPP++ +L L L L N+L +P LS LP++ + DL Sbjct: 105 IPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDL 144 Score = 33.1 bits (74), Expect = 0.36 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 IP +L + L+E+ L NN+L+ IP LSRL + DL Sbjct: 596 IPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDL 635
>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1| precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) Length = 615 Score = 32.7 bits (73), Expect = 0.47 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +2 Query: 353 QLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 QL L L L LY+NN+ IP QL L + DL Sbjct: 87 QLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDL 123 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 IP L L L LRL NN+L+ IP L+ + +Q DL Sbjct: 132 IPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDL 171
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 32.3 bits (72), Expect = 0.62 Identities = 22/81 (27%), Positives = 36/81 (44%) Frame = +2 Query: 221 AEIPPPLARSLATPDGALRPASQCRRQAHQPXXXXXXXXXXIPPQLADLSGLLELRLYNN 400 + PP + S + +G++ P RQ H IP L+ ++ L L L +N Sbjct: 532 SSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHN 591 Query: 401 NLADAIPHQLSRLPRIQHFDL 463 NL+ IP L +L + F + Sbjct: 592 NLSGNIPPSLVKLSFLSTFSV 612 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRL 439 IPP L L+ L L L NN IPH L+ L Sbjct: 465 IPPWLGSLNSLFYLDLSNNTFIGEIPHSLTSL 496
>CCNK_MOUSE (O88874) Cyclin-K| Length = 554 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/55 (32%), Positives = 21/55 (38%) Frame = +1 Query: 31 P*NPGQWPPGSRYATTMPPSRSRIPLPHTHAPHRTTEQHEHMDAVALPYSSQPTP 195 P PG PP Y PP R+P H PH + LP +S P P Sbjct: 475 PPTPGYPPPPPTYNPNFPPPPPRLPPTHAVPPHPP-------PGLGLPPASYPPP 522
>SHOC2_MOUSE (O88520) Leucine-rich repeat protein SHOC-2 (Ras-binding protein| Sur-8) Length = 582 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/59 (25%), Positives = 27/59 (45%) Frame = +2 Query: 230 PPPLARSLATPDGALRPASQCRRQAHQPXXXXXXXXXXIPPQLADLSGLLELRLYNNNL 406 P P R ++ ++ ++CR + +PP + +L+ L EL LY+N L Sbjct: 77 PAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPPSVKELTQLTELYLYSNKL 135 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Frame = +2 Query: 362 DLSGL--LELRLYNNNLADAIPHQLSRLPRIQHFDL 463 D+SGL LE+ + +NNL +PH L L +++ DL Sbjct: 420 DVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDL 455
>CLV1_ARATH (Q9SYQ8) Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1)| Length = 980 Score = 30.8 bits (68), Expect = 1.8 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 IP +L + + L+ NNL IP + LP+++ F++ Sbjct: 305 IPQSFINLGNITLINLFRNNLYGQIPEAIGELPKLEVFEV 344
>SHOC2_HUMAN (Q9UQ13) Leucine-rich repeat protein SHOC-2 (Ras-binding protein| Sur-8) Length = 582 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Frame = +2 Query: 362 DLSGL--LELRLYNNNLADAIPHQLSRLPRIQHFDL 463 D+SGL LE+ + +NNL +PH L L +++ DL Sbjct: 420 DVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDL 455
>TM55A_HUMAN (Q8N4L2) Transmembrane protein 55A (EC 3.1.3.-) (Type II| phosphatidylinositol 4,5-bisphosphate 4-phosphatase) (PtdIns-4,5-P2 4-Ptase II) Length = 257 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = +2 Query: 185 NQRPTDRPAV----PRAEIPPPLARSLATPDGALRPASQCR 295 N PT P + PRAE+PPP ++A+PD + P CR Sbjct: 20 NVTPTAPPYLQESSPRAELPPPYT-AIASPDASGIPVINCR 59
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 30.4 bits (67), Expect = 2.3 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 IPP L+ L+ L+ L L N L +IP +++L ++ +L Sbjct: 228 IPPSLSRLTSLVNLDLTFNQLTGSIPSWITQLKTVEQIEL 267 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 I L L +RL NN L+ IPH LPR+ +L Sbjct: 395 ISNNLGKCKSLTRVRLSNNKLSGQIPHGFWGLPRLSLLEL 434
>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C| repair-complementing complex 58 kDa protein) (p58) Length = 409 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = +2 Query: 110 PTLTRRTAPPNNTSTWTQWRFHTRVNQRPTDRPAVPRAEIPPPLARSLATPDGALRPASQ 289 P T+++AP + T+ + T V Q PT PA+ P + + AT PAS Sbjct: 85 PATTQQSAPASTTAVTSSTT--TTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 142 Query: 290 CRRQ 301 +++ Sbjct: 143 AKQE 146
>DRL30_ARATH (Q9LZ25) Probable disease resistance protein At5g04720| Length = 811 Score = 30.0 bits (66), Expect = 3.1 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 +P L+ L L LRLY + +++P ++ LPR+++ D+ Sbjct: 691 LPKNLSKLKALQLLRLYACHELNSLPVEICELPRLKYVDI 730
>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor| (Polygalacturonase-inhibiting protein) Length = 330 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +2 Query: 344 IPPQLADLSGLLELRLYNNNLADAIPHQLSRLPRI 448 +P L+ L L L L NNL AIP LS LP + Sbjct: 135 VPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNL 169
>PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor| (Polygalacturonase-inhibiting protein) (PGIP-1) Length = 330 Score = 30.0 bits (66), Expect = 3.1 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = +2 Query: 245 RSLATPDGALRPASQCRRQAHQPXXXXXXXXXXIPPQLADLSGLLELRLYNNNLADAIPH 424 R L+ G ++P + IP ++ L L L L N+L+ +IP Sbjct: 102 RKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPS 161 Query: 425 QLSRLPRIQHFDL 463 LS LP+I +L Sbjct: 162 SLSTLPKILALEL 174
>Y483_CHLPN (Q9Z868) Hypothetical protein CPn_0483/CP0271/CPj0483/CpB0503| Length = 1043 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +2 Query: 179 RVNQRPTDRPAVPRAEIPPPLARSLATPDGALRPASQ 289 +V ++P D+ P E PPP R +ATP LRP+SQ Sbjct: 133 KVPKQPADKKPTPPPEAPPPPVR-VATP-MPLRPSSQ 167
>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (mDomino) Length = 3072 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +2 Query: 134 PPNNTSTWTQWRFHTRVNQRPTDRPAVPRAEIPPPLARSLATPDG--ALRPASQCRRQA 304 PP Q + + Q+P P P +P P A S TP G A++P Q + QA Sbjct: 2460 PPQQQQQQQQQQQQQQQQQQPPPPPQQPPPPVPQPQAASSQTPAGQPAVQPQPQPQVQA 2518
>BRL2_ARATH (Q9ZPS9) Serine/threonine-protein kinase BRI1-like 2 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) Length = 1143 Score = 29.6 bits (65), Expect = 4.0 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +2 Query: 344 IPPQLADLSGLLE-LRLYNNNLADAIPHQLSRLPRIQHFDL 463 IPP++ D L+ LRL NN IP LS +Q DL Sbjct: 268 IPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDL 308 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Frame = +2 Query: 224 EIPPPLAR---------SLATPDGALRPASQCRRQAHQPXXXXXXXXXXIPPQLADLSGL 376 EIPP +++ SL +G + P ++ Q IPP++ L L Sbjct: 390 EIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNL 449 Query: 377 LELRLYNNNLADAIPHQLSRLPRIQ 451 +L L NN L IP + I+ Sbjct: 450 KDLILNNNQLTGEIPPEFFNCSNIE 474 Score = 28.9 bits (63), Expect = 6.8 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%) Frame = +2 Query: 227 IPPPLARSLAT------PD----GALRPA-SQCRRQAHQPXXXXXXXXXXIPPQLADLSG 373 IPP L A+ PD G + PA SQC + IPP++ +L Sbjct: 366 IPPDLCPGAASLEELRLPDNLVTGEIPPAISQCS-ELRTIDLSLNYLNGTIPPEIGNLQK 424 Query: 374 LLELRLYNNNLADAIPHQLSRLPRIQ 451 L + + NN+A IP ++ +L ++ Sbjct: 425 LEQFIAWYNNIAGEIPPEIGKLQNLK 450
>ENW1_HUMAN (Q9UQF0) HERV-W_7q21.2 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-7q Envelope protein) (HERV-W envelope protein) (Syncytin) (Syncytin-1) (Enverin) (Env-W) [Contains: Surface protein (SU); Transmembrane protein (T Length = 538 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = +2 Query: 176 TRVNQRPTDRPAVPRAEI-----PPPLARSLATPDGALRPAS 286 T++ +RP DRPA PR+++ PP S A P LRP S Sbjct: 495 TKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQP--LLRPNS 534
>ENW1_GORGO (P61561) ERV-W1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (ERVWE1 envelope protein) (Syncytin) (Syncytin-1) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 538 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = +2 Query: 176 TRVNQRPTDRPAVPRAEI-----PPPLARSLATPDGALRPAS 286 T++ +RP DRPA PR+++ PP S A P LRP S Sbjct: 495 TKIYRRPLDRPASPRSDVNDIKCTPPEEISTAQP--LLRPNS 534
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 29.6 bits (65), Expect = 4.0 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = +1 Query: 31 P*NPGQWPPGSRYATTMPPSRSRIPLPHTHAPHR---TTEQHEHMDAVALPYSSQPTPH 198 P + G PP + TT PPSR +P P HAP R H H+ P P PH Sbjct: 44 PSSIGLSPPSA--PTTTPPSRGHVPSPR-HAPPRHAYPPPSHGHLP----PSVGGPPPH 95 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/48 (35%), Positives = 20/48 (41%) Frame = +1 Query: 52 PPGSRYATTMPPSRSRIPLPHTHAPHRTTEQHEHMDAVALPYSSQPTP 195 PP T PPSR P P TH T +H P + QP+P Sbjct: 208 PPTHVQPTPSPPSRGHQPQPPTHRHAPPTHRH-------APPTHQPSP 248
>AMPN_HUMAN (P15144) Aminopeptidase N (EC 3.4.11.2) (hAPN) (Alanyl| aminopeptidase) (Microsomal aminopeptidase) (Aminopeptidase M) (gp150) (Myeloid plasma membrane glycoprotein CD13) (CD13 antigen) Length = 966 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -3 Query: 166 PLRPCARVVRWCGAARECGEEEYDYDLEASSSRTGIPEA 50 P+ P R +C A + GEEE+D+ E + T + EA Sbjct: 786 PIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEA 824
>DSDC_ECOLI (P46068) HTH-type transcriptional regulator dsdC (D-serine| deaminase activator) Length = 311 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = -1 Query: 354 CGGMEQQQHEEEDEG---WCAWRRHWLAGRSAPSGVASDRARGGGISARGTAGRSVGR 190 C + +Q D G W +W +H+ SG+ DR+ I+A G ++GR Sbjct: 198 CTLLHDRQAWSNDSGTDEWHSWAQHYAVNLPTSSGIGFDRSDLAVIAAMNHIGVAMGR 255
>LRIG3_MOUSE (Q6P1C6) Leucine-rich repeats and immunoglobulin-like domains| protein 3 precursor Length = 1117 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +2 Query: 368 SGLLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 S LL L+L N N AIP ++ +LP++QH +L Sbjct: 192 STLLVLKL-NRNRISAIPPKMFKLPQLQHLEL 222
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Frame = +2 Query: 134 PPNNTSTWTQWRFHTRVNQRPTDRPAVPRAEIP-PPLARSLATP 262 PPN T + HT + Q PT P PR P PPL A P Sbjct: 784 PPNQTQSTVAPAAHTHIQQAPTLHP--PRLPSPHPPLQPMTAPP 825
>RL3_CORGL (Q8NT09) 50S ribosomal protein L3| Length = 218 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 303 AWRRHWLAGRSAPSGVASDRARGGGISARGTAGR 202 A +RH AG+ A G + R GGI A T GR Sbjct: 126 AMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGR 159
>RL3_COREF (Q8FS80) 50S ribosomal protein L3| Length = 218 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 303 AWRRHWLAGRSAPSGVASDRARGGGISARGTAGR 202 A +RH AG+ A G + R GGI A T GR Sbjct: 126 AMKRHGFAGQGAGHGNQAAHRRVGGIGAAATPGR 159
>RNP3_HALMA (Q5V2X5) Ribonuclease P protein component 3 (EC 3.1.26.5) (RNase P| component 3) Length = 235 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 121 RECGEEEYDYDLEASSSRTGIPEATGPGFRAD 26 R G+E+ DYD +A S G+ A G RAD Sbjct: 33 RNHGDEQADYDADAISDAYGVDVAAGIEVRAD 64
>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) Length = 5085 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/45 (28%), Positives = 17/45 (37%) Frame = +1 Query: 160 AVALPYSSQPTPHXXXXXXXXXXXXXXXXXXXHPRRRAPSRQPMP 294 A A+P S QPTP P++ PS+Q P Sbjct: 585 AAAIPSSPQPTPKAATAPTATASKSPVPSQQASPKKEPPSKQDSP 629
>ATI2_HHV1F (P08314) Alpha trans-inducing factor 77 kDa protein| Length = 715 Score = 28.9 bits (63), Expect = 6.8 Identities = 22/71 (30%), Positives = 28/71 (39%) Frame = +2 Query: 101 FLFPTLTRRTAPPNNTSTWTQWRFHTRVNQRPTDRPAVPRAEIPPPLARSLATPDGALRP 280 F P R APP + T R H V + P RPA P + P+A P A +P Sbjct: 459 FSGPARQRAPAPPPTSPTLDP-RGHPAVPEAPRGRPAPPLPDADDPVAE---PPGCAAQP 514 Query: 281 ASQCRRQAHQP 313 A+ P Sbjct: 515 ATYYTHMGEVP 525
>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region| Length = 153 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/73 (24%), Positives = 23/73 (31%) Frame = +1 Query: 79 MPPSRSRIPLPHTHAPHRTTEQHEHMDAVALPYSSQPTPHXXXXXXXXXXXXXXXXXXXH 258 + PS + + H PH H H P++ PTPH H Sbjct: 7 LTPSSMQYSDIYIHTPHPHPHPHPHTPTHTHPHTPTPTPH------------------PH 48 Query: 259 PRRRAPSRQPMPT 297 P P P PT Sbjct: 49 PHTPHPHTTPTPT 61
>VGNM_RCMV (P13561) Genome polyprotein M (RNA2 polyprotein) [Contains:| Movement protein (MP); Large coat protein (LCP) (Coat protein VP37); Small coat protein (SCP) (Coat protein VP23)] Length = 996 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -1 Query: 261 GVASDRARGGGISARGTAGRSVGRWLTRVWKRHCVHVLV-LFGGAVRR 121 G+ +D G ++A T ++ R T WKR +HV V +FG V+R Sbjct: 819 GITTDSNTGWNLTALNTPVANLLR--TAAWKRGTIHVQVAMFGSTVKR 864
>RL3_CORDI (P60453) 50S ribosomal protein L3| Length = 218 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 303 AWRRHWLAGRSAPSGVASDRARGGGISARGTAGR 202 A +RH AG+ A G + R GGI A T GR Sbjct: 126 AMKRHGFAGQGAAHGNQAAHRRVGGIGACATPGR 159
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 25.4 bits (54), Expect(2) = 8.4 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = +1 Query: 25 CRP*NPGQWPPGSRYATTMPPSRSRIPLPHTHAPHRTTEQ 144 C P +P P + TT S SR+PLP H+PH ++ Sbjct: 464 CDPESP---TPTLGHKTT---SLSRLPLPPPHSPHSAQDR 497 Score = 21.6 bits (44), Expect(2) = 8.4 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = +2 Query: 197 TDRPAVPRAEIPPPLARSLAT 259 TD P PR P P + SL T Sbjct: 534 TDPPTTPRQLSPSPSSLSLRT 554
>UVRB_PSEU2 (Q4ZV05) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 671 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -3 Query: 274 ERAVGGGERPSERRGDFSSRHGRPVSGALVDSS--MEAPLRPCARVVRWCGAARECGEEE 101 ERA+G ER E++ F+ HG G D + ME P +R + G A+ EE Sbjct: 560 ERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPGSRSKKRKGMAK-AAEEN 618 Query: 100 YDYDLEASS 74 Y+ E S Sbjct: 619 ARYENELRS 627
>UVRB_PSESM (Q884C9) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 671 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -3 Query: 274 ERAVGGGERPSERRGDFSSRHGRPVSGALVDSS--MEAPLRPCARVVRWCGAARECGEEE 101 ERA+G ER E++ F+ HG G D + ME P +R + G A+ EE Sbjct: 560 ERAIGETERRREKQIAFNLEHGITPKGVFKDVADIMEGATVPGSRSKKRKGMAK-AAEES 618 Query: 100 YDYDLEASS 74 Y+ E S Sbjct: 619 ARYENELRS 627
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 28 RP*NPGQWPPGSRYATTMPPSRSRIPLPHTHAP 126 RP P PPGS + PP+RS IP+ P Sbjct: 754 RPPPPMGKPPGSIVRPSAPPARSSIPMTRPPVP 786
>LRIG3_HUMAN (Q6UXM1) Leucine-rich repeats and immunoglobulin-like domains| protein 3 precursor (LIG-3) Length = 1119 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +2 Query: 374 LLELRLYNNNLADAIPHQLSRLPRIQHFDL 463 LL L+L N N AIP ++ +LP++QH +L Sbjct: 194 LLVLKL-NRNRISAIPPKMFKLPQLQHLEL 222
>ENW1_PANTR (P61563) ERV-W1 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (ERVWE1 envelope protein) (Syncytin) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 538 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = +2 Query: 176 TRVNQRPTDRPAVPRAEI-----PPPLARSLATPDGALRPAS 286 T++ +RP DRPA PR+++ PP + T LRP S Sbjct: 495 TKIYRRPLDRPASPRSDVNDIKGTPP--EEILTAQPLLRPNS 534
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 339 QQQHEEEDEGWCAWRRHWLAGRSAPSGVASDRARGGGISARGTAG 205 QQQ +++ + ++H L+ SA S S + GG +S G G Sbjct: 768 QQQQQQQQQQSLGQQQHCLSSPSAGSLTPSSSSGGGSVSGGGVGG 812 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,377,445 Number of Sequences: 219361 Number of extensions: 1082663 Number of successful extensions: 4982 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 4512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4964 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
