Clone Name | bastl40b04 |
---|---|
Clone Library Name | barley_pub |
>gb|BC073264.1| Xenopus laevis MGC80627 protein, mRNA (cDNA clone MGC:80627 IMAGE:5506375), complete cds Length = 3061 Score = 44.1 bits (22), Expect = 0.32 Identities = 28/30 (93%) Strand = Plus / Minus Query: 281 agttcagggaggaggtggagatcatggagg 310 ||||||||| | |||||||||||||||||| Sbjct: 1073 agttcagggtgaaggtggagatcatggagg 1044
>ref|XM_415674.1| PREDICTED: Gallus gallus similar to fetal Alzheimer antigen isoform 2; bromodomain and PHD domain transcription factor; nucleosome remodeling factor, large subunit; fetal Alz-50 reactive clone 1 (LOC417422), mRNA Length = 8802 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagga 314 ||||||| |||||||||||||||||| Sbjct: 241 gaggaggaggagatcatggaggagga 266
>ref|XM_390271.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10095.1) partial mRNA Length = 4200 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gtagttcgtgaggatgatggag 243 |||||||||||||||||||||| Sbjct: 1202 gtagttcgtgaggatgatggag 1181
>gb|AF470350.1| Tortula ruralis WD40 mRNA, complete cds Length = 1628 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagga 314 |||||||||||||| ||||||||||| Sbjct: 124 gaggaggtggagatgatggaggagga 149
>ref|NM_001031238.1| Gallus gallus similar to hypothetical protein (LOC423926), mRNA Length = 2305 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggaggtggagatcatggaggaggaaggcggcggc 324 ||||| ||||| |||||||||||| ||||||||| Sbjct: 146 ggaggaggagagcatggaggaggagggcggcggc 179
>emb|AJ719355.1| Gallus gallus mRNA for hypothetical protein, clone 1j9 Length = 2305 Score = 44.1 bits (22), Expect = 0.32 Identities = 31/34 (91%) Strand = Plus / Plus Query: 291 ggaggtggagatcatggaggaggaaggcggcggc 324 ||||| ||||| |||||||||||| ||||||||| Sbjct: 146 ggaggaggagagcatggaggaggagggcggcggc 179
>emb|AL669848.12| Mouse DNA sequence from clone RP23-209F17 on chromosome X, complete sequence Length = 114708 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 281 agttcagggaggaggtggagat 302 |||||||||||||||||||||| Sbjct: 37921 agttcagggaggaggtggagat 37942
>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete sequence Length = 99318 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 288 ggaggaggtggagatcatggaggaggaag 316 ||||||||||||||| |||||||||||| Sbjct: 18316 ggaggaggtggagatggtggaggaggaag 18288
>ref|XM_715624.1| Candida albicans SC5314 putative activator of forkhead-like transcription factor (CaO19_11757), mRNA Length = 894 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 tttcatcaacatcagtagatt 64 ||||||||||||||||||||| Sbjct: 103 tttcatcaacatcagtagatt 83
>ref|XM_715496.1| Candida albicans SC5314 putative activator of forkhead-like transcription factor (CaO19_4281), mRNA Length = 894 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 tttcatcaacatcagtagatt 64 ||||||||||||||||||||| Sbjct: 103 tttcatcaacatcagtagatt 83
>gb|AC148237.7| Medicago truncatula clone mth2-1o14, complete sequence Length = 116678 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 ggtggagatcatggaggagga 314 ||||||||||||||||||||| Sbjct: 114776 ggtggagatcatggaggagga 114796
>gb|AC027449.6| Homo sapiens chromosome 18, clone RP11-535A5, complete sequence Length = 149660 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 atctttagcactgtagttcgtgagg 234 ||||||| ||||||||||||||||| Sbjct: 76736 atctttaacactgtagttcgtgagg 76712
>ref|NM_164827.1| Drosophila melanogaster CG17834-RC, transcript variant C (CG17834), mRNA Length = 1865 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagg 313 ||||||| ||||||||||||||||| Sbjct: 1022 gaggaggaggagatcatggaggagg 1046
>ref|NM_135398.2| Drosophila melanogaster CG17834-RA, transcript variant A (CG17834), mRNA Length = 2055 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagg 313 ||||||| ||||||||||||||||| Sbjct: 1212 gaggaggaggagatcatggaggagg 1236
>gb|AC092234.1|AC092234 Drosophila melanogaster, chromosome 2L, region 29C-29D, BAC clone BACR02I15, complete sequence Length = 186490 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagg 313 ||||||| ||||||||||||||||| Sbjct: 162790 gaggaggaggagatcatggaggagg 162814
>gb|AC008330.3|AC008330 Drosophila melanogaster, chromosome 2L, region 29D-29E, BAC clone BACR23B08, complete sequence Length = 161927 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagg 313 ||||||| ||||||||||||||||| Sbjct: 75538 gaggaggaggagatcatggaggagg 75562
>gb|AE003621.3| Drosophila melanogaster chromosome 2L, section 30 of 83 of the complete sequence Length = 308031 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagg 313 ||||||| ||||||||||||||||| Sbjct: 178952 gaggaggaggagatcatggaggagg 178976
>emb|AJ249493.1|DME249493 Drosophila melanogaster mRNA for hypothetical protein (anon-29Da gene) alternatively spliced form Length = 1705 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggaggtggagatcatggaggagg 313 ||||||| ||||||||||||||||| Sbjct: 863 gaggaggaggagatcatggaggagg 887
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 252 ggagagcccgcagccggtggcgtgggac 279 ||||||||||| ||||||| |||||||| Sbjct: 1733179 ggagagcccgccgccggtgacgtgggac 1733152
>ref|XM_529349.1| PREDICTED: Pan troglodytes LOC450763 (LOC450763), mRNA Length = 1669 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 atcatggaggaggaaggcggcggc 324 ||||||||||| |||||||||||| Sbjct: 570 atcatggaggaagaaggcggcggc 547
>gb|AC149676.2| Bos taurus BAC CH240-43C16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 168416 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 27203 tagcatagcatagcatagag 27222
>gb|AC105324.11| Mus musculus chromosome 15, clone RP24-311E18, complete sequence Length = 171004 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gctagcatagcatagcatag 123 |||||||||||||||||||| Sbjct: 163267 gctagcatagcatagcatag 163286
>gb|AC150881.4| Bos taurus BAC CH240-354J15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 174996 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 115170 tagcatagcatagcatagag 115189
>gb|AC149762.2| Bos taurus BAC CH240-123C23 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 187366 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 128479 tagcatagcatagcatagag 128460
>ref|XM_863353.1| PREDICTED: Canis familiaris hypothetical protein LOC611621 (LOC611621), mRNA Length = 714 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tggaggtggcggtggagagc 258 |||||||||||||||||||| Sbjct: 93 tggaggtggcggtggagagc 74
>emb|CR956423.7| Pig DNA sequence from clone CH242-20D9 on chromosome 6, complete sequence Length = 69319 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tagagagaagatctttagca 219 |||||||||||||||||||| Sbjct: 65509 tagagagaagatctttagca 65528
>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence Length = 121026 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 gggaggaggtggagatcatggaggagga 314 |||||||| ||||||| ||||||||||| Sbjct: 107505 gggaggagatggagatgatggaggagga 107478
>gb|AC147434.12| Medicago truncatula clone mth2-28h7, complete sequence Length = 127300 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gtggagatcatggaggagga 314 |||||||||||||||||||| Sbjct: 89497 gtggagatcatggaggagga 89516
>emb|AL136967.5| Human DNA sequence from clone RP1-149M18 on chromosome 6 Contains the NCR2 gene for natural cytotoxicity triggering receptor 2 and four CpG islands, complete sequence Length = 115295 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 ggagatcatggaggaggaag 316 |||||||||||||||||||| Sbjct: 18457 ggagatcatggaggaggaag 18476
>emb|AL021921.1|HS357I16 Human DNA sequence from clone RP3-357I16 on chromosome 1p36.13, complete sequence Length = 134506 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 gggcagagcagagcaggacc 194 |||||||||||||||||||| Sbjct: 125223 gggcagagcagagcaggacc 125204
>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis Length = 265677 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 ggtggcggtggagagcccgcagcc 266 |||||||||||||||||| ||||| Sbjct: 7397 ggtggcggtggagagccctcagcc 7420
>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence Length = 265677 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 ggtggcggtggagagcccgcagcc 266 |||||||||||||||||| ||||| Sbjct: 7397 ggtggcggtggagagccctcagcc 7420
>gb|AC112657.2| Homo sapiens X BAC RP11-647I17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116810 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 5067 tagcatagcatagcatagag 5048
>gb|AC160655.2| Pan troglodytes BAC clone CH251-26F13 from chromosome unknown, complete sequence Length = 197508 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 ggagatcatggaggaggaag 316 |||||||||||||||||||| Sbjct: 171308 ggagatcatggaggaggaag 171289
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gcgtgggaccagttcaggga 290 |||||||||||||||||||| Sbjct: 3510063 gcgtgggaccagttcaggga 3510044
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 ggcggtggagagcccgcagccggtggcg 273 |||||||| |||||||||||||| |||| Sbjct: 175009 ggcggtggcgagcccgcagccggcggcg 174982
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 19396218 tagcatagcatagcatagag 19396237
>gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, region 49E-49F, BAC clone BACR30D19, complete sequence Length = 163052 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gaggtggcggtggagagccc 260 |||||||||||||||||||| Sbjct: 150183 gaggtggcggtggagagccc 150202
>gb|AF200339.1|AF200339 Gallus gallus cone-type transducin alpha subunit mRNA, complete cds Length = 1614 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gaggatgatggaggtggcgg 250 |||||||||||||||||||| Sbjct: 921 gaggatgatggaggtggcgg 902
>ref|NM_204690.1| Gallus gallus cone-type transducin alpha subunit (LOC395425), mRNA Length = 1614 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gaggatgatggaggtggcgg 250 |||||||||||||||||||| Sbjct: 921 gaggatgatggaggtggcgg 902
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ggtggcggtggagagcccgc 262 |||||||||||||||||||| Sbjct: 310827 ggtggcggtggagagcccgc 310846
>gb|AC160057.2| Pan troglodytes BAC clone CH251-416M4 from chromosome unknown, complete sequence Length = 168684 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 ggagatcatggaggaggaag 316 |||||||||||||||||||| Sbjct: 125550 ggagatcatggaggaggaag 125569
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 100991 tagcatagcatagcatagag 101010
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 14627 tagcatagcatagcatagag 14646
>gb|U95738.1|HSU95738 Human chromosome 16p13.11 BAC clone CIT987SK-29B12 complete sequence Length = 171368 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gggcagagcagagcaggacc 194 |||||||||||||||||||| Sbjct: 20750 gggcagagcagagcaggacc 20769
>dbj|AK102224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087M22, full insert sequence Length = 2187 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 2014 tagcatagcatagcatagag 1995
>ref|NM_211443.1| Eremothecium gossypii AGL286Cp (AGL286C), mRNA Length = 993 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 246 ggcggtggagagcccgcagccggtggcg 273 |||||||| |||||||||||||| |||| Sbjct: 519 ggcggtggcgagcccgcagccggcggcg 546
>gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30 of 73 of the complete sequence Length = 263912 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 gaggtggcggtggagagccc 260 |||||||||||||||||||| Sbjct: 219395 gaggtggcggtggagagccc 219414
>emb|CR942525.2| Xenopus tropicalis finished cDNA, clone TEgg062a19 Length = 3164 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 283 ttcagggaggaggtggagatcatggagg 310 ||||||| | |||||||||||||||||| Sbjct: 1031 ttcagggtgaaggtggagatcatggagg 1004
>dbj|AP004981.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT13N17, TM0436b, complete sequence Length = 43428 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 gatgatggaggtggcggtgg 253 |||||||||||||||||||| Sbjct: 21074 gatgatggaggtggcggtgg 21055
>emb|AL845548.7| Mouse DNA sequence from clone RP23-307N14 on chromosome 2, complete sequence Length = 142263 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gctagcatagcatagcatag 123 |||||||||||||||||||| Sbjct: 39453 gctagcatagcatagcatag 39472
>emb|AL627105.13| Mouse DNA sequence from clone RP23-383D12 on chromosome 4, complete sequence Length = 190882 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gacctaggctagagagaaga 210 |||||||||||||||||||| Sbjct: 70799 gacctaggctagagagaaga 70780
>dbj|AB028186.1| Oryza sativa mRNA for OsNAC7 protein, complete cds Length = 1179 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tagcatagcatagcatagag 125 |||||||||||||||||||| Sbjct: 1125 tagcatagcatagcatagag 1106 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,620,207 Number of Sequences: 3902068 Number of extensions: 3620207 Number of successful extensions: 87042 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86780 Number of HSP's gapped (non-prelim): 262 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)