>NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 741

 Score = 34.7 bits (78), Expect = 0.094
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 245 HVIAISPLHCICACDVKRFWFLP--RPPLLFVVASTQECVRWTNLS 376
           H++   PL C     ++ FW +P    P +  + ST EC+ W  LS
Sbjct: 451 HILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSTYECLIWPLLS 496

>MSHR_MOUSE (Q01727) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 315

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 206 LLWSRFFTYSI*FHVIAISPLHCICACDVKRF-WFLPRPPLLFVVASTQECVRWTNLSR* 382
           L W  FF + +   +I + P H  C+C  K F  FL    LL V++ST + + +   S+ 
Sbjct: 250 LCWGPFFLHLL---LIVLCPQHPTCSCIFKNFNLFL----LLIVLSSTVDPLIYAFRSQE 302

Query: 383 PRISARTILFCT 418
            R++ + +L C+
Sbjct: 303 LRMTLKEVLLCS 314

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 245 HVIAISPLHCICACDVKRFWFLP--RPPLLFVVASTQECV 358
           H++   PL C     ++ FW +P    P +  + ST EC+
Sbjct: 452 HILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSTYECL 491

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 245 HVIAISPLHCICACDVKRFWFLP--RPPLLFVVASTQECV 358
           H++   PL C     ++ FW +P    P +  + ST EC+
Sbjct: 452 HILCTKPLPCRQPAPIRGFWIVPDILGPTMICITSTYECL 491

>RS11_MYCPA (Q73S45) 30S ribosomal protein S11|
          Length = 138

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 121 PVKGGAASPKQGIQTQEKEPPSAPH 195
           P K  AA+PK+G +T+ +E  + PH
Sbjct: 3   PAKKAAAAPKKGQKTRRREKKNVPH 27

>LNT_CHLCV (Q824Q5) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 541

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 115 FFPVKGGAASPKQGIQTQEKEPPSAPHCSFLALVSLLYLFDLVPCDCHFS 264
           FF + G A     G+     EP  +P  S+  L SLL+L+ +     HFS
Sbjct: 24  FFSLLGSAVG--YGLLWYSLEPQKSPKLSWRQLTSLLFLWSVTVYGVHFS 71

>TYRO_AGABI (O42713) Tyrosinase (EC 1.14.18.1) (Monophenol monooxygenase)|
           (Phenolase) (Monophenol oxidase) (Cresolase)
          Length = 556

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 174 FFLCLDPLLWTCSTTLDREKMLWSA 100
           FF   DP+ W   T +DR   LW A
Sbjct: 270 FFAAFDPIFWLHHTNVDRLLSLWKA 294

>LEU3_MYCPA (Q73VI1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 336

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 101 ADQSIFSLSRVVLQVQSKGSRHRKKSLLVHR----TAASLLWSR 220
           +  + F + RVV+    +  R RK   LVH+    T A  LWSR
Sbjct: 148 SQNTAFGVRRVVVDAFERARRRRKHLTLVHKTNVLTFAGKLWSR 191


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,160,249
Number of Sequences: 219361
Number of extensions: 1148470
Number of successful extensions: 2908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)