Clone Name | bastl40b02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_786511.1| PREDICTED: Strongylocentrotus purpuratus similar to bromodomain and WD repeat domain containing 2 (LOC586741), mRNA Length = 8214 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Plus Query: 5 tacctttggacatgtgttatgatg 28 |||||||||||||||||||||||| Sbjct: 2801 tacctttggacatgtgttatgatg 2824
>gb|AC018951.8|AC018951 Homo sapiens chromosome 11, clone RP11-307P14, complete sequence Length = 194547 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 21 ttatgatgccacctgagtaact 42 |||||||||||||||||||||| Sbjct: 72431 ttatgatgccacctgagtaact 72410
>emb|BX649276.6| Zebrafish DNA sequence from clone CH211-79C14 in linkage group 22, complete sequence Length = 84049 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 caaagcattttttccctgtca 127 ||||||||||||||||||||| Sbjct: 66552 caaagcattttttccctgtca 66572
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgttcgtcgtcgcgtcga 344 |||||||||||||||||||| Sbjct: 914076 gctgttcgtcgtcgcgtcga 914057
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 gccgccgctgctgttcgtcgtcgc 339 ||||||||||||| |||||||||| Sbjct: 1030599 gccgccgctgctgctcgtcgtcgc 1030576
>ref|XM_838258.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1175) partial mRNA Length = 6936 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 316 gccgccgctgctgttcgtcgtcgc 339 ||||||||||||| |||||||||| Sbjct: 6594 gccgccgctgctgctcgtcgtcgc 6571
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgctgctgttcgtcgtcgcg 340 |||||||||||||||||||| Sbjct: 598010 cgctgctgttcgtcgtcgcg 598029
>emb|AL627256.5| Zebrafish DNA sequence from clone RP71-1L10 in linkage group 8 Contains part of a gene for a novel peptide transporter, complete sequence Length = 169757 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tgtgattgccatttctccac 266 |||||||||||||||||||| Sbjct: 18550 tgtgattgccatttctccac 18531
>ref|XM_686107.1| PREDICTED: Danio rerio similar to Ras-related protein Ral-B (LOC562731), mRNA Length = 1830 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 tgtgattgccatttctccac 266 |||||||||||||||||||| Sbjct: 1022 tgtgattgccatttctccac 1003
>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete sequence Length = 198430 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tgtgattgccatttctccac 266 |||||||||||||||||||| Sbjct: 156483 tgtgattgccatttctccac 156502
>dbj|AK016703.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933406L23 product:unclassifiable, full insert sequence Length = 1504 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 agacacaggaaaaagagcct 180 |||||||||||||||||||| Sbjct: 1168 agacacaggaaaaagagcct 1187
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 tcctcacaccatgatctccaggtg 69 ||||||||||| |||||||||||| Sbjct: 5321540 tcctcacaccaagatctccaggtg 5321563
>gb|AC098810.3| Papio anubis clone RP41-317I9, complete sequence Length = 166347 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cactgcagcttccttgcttt 212 |||||||||||||||||||| Sbjct: 22986 cactgcagcttccttgcttt 22967
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 ccgccgctgctgttcgtcgtcgcg 340 ||||||||||||||||||| |||| Sbjct: 4293904 ccgccgctgctgttcgtcggcgcg 4293881
>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0610E02 Length = 135816 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 tcctcacaccatgatctccaggtg 69 ||||||||||| |||||||||||| Sbjct: 113128 tcctcacaccaagatctccaggtg 113151
>dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H03, full insert sequence Length = 514 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 tcctcacaccatgatctccaggtg 69 ||||||||||| |||||||||||| Sbjct: 294 tcctcacaccaagatctccaggtg 271
>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence Length = 198160 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 agacacaggaaaaagagcct 180 |||||||||||||||||||| Sbjct: 76505 agacacaggaaaaagagcct 76486
>gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-dependent iron transport protein (sfuABC) genes, complete cds Length = 4583 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 gccgccgctgctgttcgtcg 335 |||||||||||||||||||| Sbjct: 4082 gccgccgctgctgttcgtcg 4063
>dbj|AP002022.1| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2198J12, complete sequence Length = 173933 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 ttttttccctgtcaagggtggtgc 137 ||||||||| |||||||||||||| Sbjct: 51001 ttttttcccagtcaagggtggtgc 51024 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,915,577 Number of Sequences: 3902068 Number of extensions: 3915577 Number of successful extensions: 69985 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69824 Number of HSP's gapped (non-prelim): 161 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)