ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_786511.1| PREDICTED: Strongylocentrotus purpuratus simila... 48 0.023
2gb|AC018951.8|AC018951 Homo sapiens chromosome 11, clone RP11-30... 44 0.36
3emb|BX649276.6| Zebrafish DNA sequence from clone CH211-79C14 in... 42 1.4
4gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 5.7
5gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 5.7
6ref|XM_838258.1| Leishmania major strain Friedlin hypothetical p... 40 5.7
7gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 5.7
8emb|AL627256.5| Zebrafish DNA sequence from clone RP71-1L10 in l... 40 5.7
9ref|XM_686107.1| PREDICTED: Danio rerio similar to Ras-related p... 40 5.7
10emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in l... 40 5.7
11dbj|AK016703.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.7
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
13gb|AC098810.3| Papio anubis clone RP41-317I9, complete sequence 40 5.7
14dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.7
15dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
16dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
17gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet... 40 5.7
18gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-d... 40 5.7
19dbj|AP002022.1| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 5.7

>ref|XM_786511.1| PREDICTED: Strongylocentrotus purpuratus similar to bromodomain and
            WD repeat domain containing 2 (LOC586741), mRNA
          Length = 8214

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 5    tacctttggacatgtgttatgatg 28
            ||||||||||||||||||||||||
Sbjct: 2801 tacctttggacatgtgttatgatg 2824



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>gb|AC018951.8|AC018951 Homo sapiens chromosome 11, clone RP11-307P14, complete sequence
          Length = 194547

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 21    ttatgatgccacctgagtaact 42
             ||||||||||||||||||||||
Sbjct: 72431 ttatgatgccacctgagtaact 72410



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>emb|BX649276.6| Zebrafish DNA sequence from clone CH211-79C14 in linkage group 22,
             complete sequence
          Length = 84049

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   caaagcattttttccctgtca 127
             |||||||||||||||||||||
Sbjct: 66552 caaagcattttttccctgtca 66572



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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    gctgttcgtcgtcgcgtcga 344
              ||||||||||||||||||||
Sbjct: 914076 gctgttcgtcgtcgcgtcga 914057



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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 316     gccgccgctgctgttcgtcgtcgc 339
               ||||||||||||| ||||||||||
Sbjct: 1030599 gccgccgctgctgctcgtcgtcgc 1030576



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>ref|XM_838258.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1175)
            partial mRNA
          Length = 6936

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  gccgccgctgctgttcgtcgtcgc 339
            ||||||||||||| ||||||||||
Sbjct: 6594 gccgccgctgctgctcgtcgtcgc 6571



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    cgctgctgttcgtcgtcgcg 340
              ||||||||||||||||||||
Sbjct: 598010 cgctgctgttcgtcgtcgcg 598029



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>emb|AL627256.5| Zebrafish DNA sequence from clone RP71-1L10 in linkage group 8 Contains
             part of a gene for a novel peptide transporter, complete
             sequence
          Length = 169757

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tgtgattgccatttctccac 266
             ||||||||||||||||||||
Sbjct: 18550 tgtgattgccatttctccac 18531



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>ref|XM_686107.1| PREDICTED: Danio rerio similar to Ras-related protein Ral-B
            (LOC562731), mRNA
          Length = 1830

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 247  tgtgattgccatttctccac 266
            ||||||||||||||||||||
Sbjct: 1022 tgtgattgccatttctccac 1003



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>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete
              sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    tgtgattgccatttctccac 266
              ||||||||||||||||||||
Sbjct: 156483 tgtgattgccatttctccac 156502



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>dbj|AK016703.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933406L23 product:unclassifiable, full
            insert sequence
          Length = 1504

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  agacacaggaaaaagagcct 180
            ||||||||||||||||||||
Sbjct: 1168 agacacaggaaaaagagcct 1187



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 46      tcctcacaccatgatctccaggtg 69
               ||||||||||| ||||||||||||
Sbjct: 5321540 tcctcacaccaagatctccaggtg 5321563



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>gb|AC098810.3| Papio anubis clone RP41-317I9, complete sequence
          Length = 166347

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   cactgcagcttccttgcttt 212
             ||||||||||||||||||||
Sbjct: 22986 cactgcagcttccttgcttt 22967



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 317     ccgccgctgctgttcgtcgtcgcg 340
               ||||||||||||||||||| ||||
Sbjct: 4293904 ccgccgctgctgttcgtcggcgcg 4293881



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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     tcctcacaccatgatctccaggtg 69
              ||||||||||| ||||||||||||
Sbjct: 113128 tcctcacaccaagatctccaggtg 113151



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>dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H03, full
           insert sequence
          Length = 514

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 46  tcctcacaccatgatctccaggtg 69
           ||||||||||| ||||||||||||
Sbjct: 294 tcctcacaccaagatctccaggtg 271



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>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   agacacaggaaaaagagcct 180
             ||||||||||||||||||||
Sbjct: 76505 agacacaggaaaaagagcct 76486



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>gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-dependent iron transport
            protein (sfuABC) genes, complete cds
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  gccgccgctgctgttcgtcg 335
            ||||||||||||||||||||
Sbjct: 4082 gccgccgctgctgttcgtcg 4063



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>dbj|AP002022.1| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2198J12, complete
             sequence
          Length = 173933

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   ttttttccctgtcaagggtggtgc 137
             ||||||||| ||||||||||||||
Sbjct: 51001 ttttttcccagtcaagggtggtgc 51024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,915,577
Number of Sequences: 3902068
Number of extensions: 3915577
Number of successful extensions: 69985
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69824
Number of HSP's gapped (non-prelim): 161
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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