Clone Information

BLAST Search Result

Clone Name	bastl40b01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor	32	0.41
2	HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)	32	0.41
3	OLEO3_MAIZE (P21641) Oleosin Zm-II (Oleosin 18 kDa) (Lipid body-...	32	0.53
4	KCAB3_HUMAN (O43448) Voltage-gated potassium channel beta-3 subu...	32	0.53
5	EMIL1_MOUSE (Q99K41) EMILIN-1 precursor (Elastin microfibril int...	31	0.69
6	FILA_HUMAN (P20930) Filaggrin	31	0.91
7	PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS5...	30	1.2
8	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	30	1.2
9	IF2_LEIXX (Q6AG49) Translation initiation factor IF-2	30	1.2
10	ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3	30	1.2
11	DPOA2_RAT (O89043) DNA polymerase alpha subunit B (DNA polymeras...	30	2.0
12	HOL3_HOLDI (Q25055) Holotricin-3 precursor	30	2.0
13	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	30	2.0
14	DPOA2_HUMAN (Q14181) DNA polymerase alpha subunit B (DNA polymer...	30	2.0
15	RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/in...	30	2.0
16	HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)	29	2.6
17	RL3_PSEAE (Q9HWD5) 50S ribosomal protein L3	29	2.6
18	ZN580_HUMAN (Q9UK33) Zinc finger protein 580 (LDL-induced EC pro...	29	2.6
19	PNRC2_MOUSE (Q9CR73) Proline-rich nuclear receptor coactivator 2	29	2.6
20	PKND_CHLMU (Q9PK92) Serine/threonine-protein kinase pknD (EC 2.7...	29	2.6
21	HXD3_CHICK (O93353) Homeobox protein Hox-D3	29	3.4
22	HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3	29	3.4
23	CD5R2_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precu...	29	3.4
24	BRC4_DROME (Q24206) Broad-complex core-protein isoform 6	29	3.4
25	SOX8_MOUSE (Q04886) Transcription factor SOX-8	29	3.4
26	DHN3_PEA (P28641) Dehydrin DHN3	29	3.4
27	DHN2_PEA (P28640) Dehydrin DHN2	29	3.4
28	V70K_TYMVA (P20131) 69 kDa protein	29	3.4
29	KRA61_RABIT (Q02957) Keratin, glycine/tyrosine-rich of hair	29	3.4
30	KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3...	28	4.5
31	HORN_HUMAN (Q86YZ3) Hornerin	28	4.5
32	WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...	28	4.5
33	DPOA2_MOUSE (P33611) DNA polymerase alpha subunit B (DNA polymer...	28	5.9
34	SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro...	28	5.9
35	CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel al...	28	5.9
36	MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)	28	5.9
37	INVS_CANFA (Q6JAN1) Inversin (Inversion of embryo turning protei...	28	5.9
38	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	28	5.9
39	BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch...	28	5.9
40	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	28	5.9
41	FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)	28	5.9
42	DHN1_PEA (P28639) Dehydrin DHN1	28	5.9
43	FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)	28	5.9
44	FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog...	28	5.9
45	IF2_BURPS (Q63TP8) Translation initiation factor IF-2	28	7.7
46	IF2_BURP1 (Q3JSY9) Translation initiation factor IF-2	28	7.7
47	IF2_BURMA (Q62KK9) Translation initiation factor IF-2	28	7.7
48	L52_ADEG1 (Q64753) Late L1 52 kDa protein	28	7.7
49	DED1_NEUCR (Q9P6U9) ATP-dependent RNA helicase ded-1 (EC 3.6.1.-)	28	7.7
50	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	28	7.7
51	ATKC_MYXXA (Q93MV4) Potassium-transporting ATPase C chain (EC 3....	28	7.7
52	FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger prote...	28	7.7
53	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	28	7.7

>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor|
          Length = 1029

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 109 PRQRRPKSSLLGPARRGDDDVHGGPRRVGHQLDQAGHG-YSPRPRRGEVSTGGAAASGTD 285
           P  R PK     P RRGD    GGP   G + ++   G   PR   GEV + GA      
Sbjct: 424 PGPRGPKGE---PGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRGL 480

Query: 286 LGGRG 300
            G RG
Sbjct: 481 PGPRG 485

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>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)|
          Length = 443

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           PP+PP   P A  PP   SP +     P PA
Sbjct: 109 PPQPPAPTPAAPPPPSSVSPPQSANSNPTPA 139

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>OLEO3_MAIZE (P21641) Oleosin Zm-II (Oleosin 18 kDa) (Lipid body-associated|
           protein L2)
          Length = 187

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 151 RRGDDDVHGGPRRVGHQLDQAGH-----GYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
           +R  D V    RR+     QAGH     G + + R  E  TGG A +G   GGR  +
Sbjct: 131 QRTPDYVEEARRRMAEAAAQAGHKTAQAGQAIQGRAQEAGTGGGAGAGAGGGGRASS 187

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>KCAB3_HUMAN (O43448) Voltage-gated potassium channel beta-3 subunit (K(+)|
           channel beta-3 subunit) (Kv-beta-3)
          Length = 404

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +1

Query: 106 NPRQRRPKSSLLGPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRR----GEVSTGGAAA 273
           N R R  +  L GP R G    +GGP   GH     G G  P+ R     G  + GGA  
Sbjct: 11  NLRSRSSEDRLCGP-RPGPGGGNGGPAGGGHGNPPGGGGSGPKARAAVVPGPPAPGGAVR 69

Query: 274 SGTDLG 291
             T  G
Sbjct: 70  ESTGRG 75

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>EMIL1_MOUSE (Q99K41) EMILIN-1 precursor (Elastin microfibril interface-located|
           protein 1) (Elastin microfibril interfacer 1)
          Length = 1017

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +1

Query: 130 SSLLGPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGR 297
           +S LGP+   + +  GGP R+GH L  A       P R E   G  A    +LGGR
Sbjct: 416 NSTLGPSEEQEKNWPGGPGRLGHWLPAA-------PGRLEKLEGLLANVSRELGGR 464

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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +1

Query: 172  HGGPRRVGHQLDQAGHGYSPR------PRRGEVSTGGAAASGTD 285
            HG      HQ D+A HG+S         R  E S+GG AAS  +
Sbjct: 1628 HGSRNPRSHQEDRASHGHSAESSRQSGTRHAETSSGGQAASSQE 1671



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +1

Query: 172  HGGPRRVGHQLDQAGHGYS------PRPRRGEVSTGGAAAS 276
            HG      H  D+AGHG+S         R  E S+GG AAS
Sbjct: 3249 HGSRHPRSHHEDRAGHGHSADRSRQSGTRHAETSSGGQAAS 3289



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = +1

Query: 172  HGGPRRVGHQLDQAGHGYSPRPRR------GEVSTGGAAAS 276
            HG      H  D+AGHG+S    R       E S+GG AAS
Sbjct: 980  HGSRHPRSHHEDRAGHGHSADSSRQSGTPHAETSSGGQAAS 1020



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRR------GEVSTGGAAAS 276
            G A+    D    PR   H  D+AGHG+S    R       E S+GG AAS
Sbjct: 2269 GSAQEQSRDGSRHPR--SHHEDRAGHGHSAESSRQSGTHHAENSSGGQAAS 2317

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>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor|
          Length = 1901

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +1

Query: 142 GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           GP   G    HGG    G  L   G G +     G+   GGA + G  LGG GG
Sbjct: 251 GPGATGGTGGHGGVGGDGGWLAPGGAGGAG----GQGGAGGAGSDGGALGGTGG 300



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
            G    GD++ +GG    G Q  Q G G +       ++  G A      GG+GGA
Sbjct: 1106 GAGGAGDNNFNGGQGGAGGQGGQGGLGGASTT---SINANGGAGGNGGTGGKGGA 1157



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
            G    GD++ +GG    G Q  Q G G +       ++  G A      GG+GGA
Sbjct: 905  GAGGAGDNNFNGGQGGAGGQGGQGGLGGASTT---SINANGGAGGNGGTGGKGGA 956



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
            G    GD  + GG    G    Q G G       G  STG A+A+  D GG GGA
Sbjct: 1729 GAGADGDPSIDGGQGGAGGHGGQGGKG-------GLNSTGLASAASGD-GGNGGA 1775



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
            G    GD  + GG    G    Q G G       G  STG A+A+  D GG GGA
Sbjct: 1524 GAGADGDPSIDGGQGGAGGHGGQGGKG-------GLNSTGLASAASGD-GGNGGA 1570



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
            G    GD  + GG    G    Q G G       G  STG A+A+  D GG GGA
Sbjct: 1319 GAGADGDPSIDGGQGGAGGHGGQGGKG-------GLNSTGLASAASGD-GGNGGA 1365

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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           APP PP   P + APPV  SP       P P
Sbjct: 195 APPVPPSPAPPSPAPPVPPSPAPPSPPSPAP 225



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           APP PP   P + +PPV  SP       P P
Sbjct: 143 APPLPPSPAPPSPSPPVPPSPSPPVPPSPAP 173



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           APP PP   P + +PP   SP       P PA
Sbjct: 224 APPSPPSPAPPSPSPPAPPSPVPPSPAPPSPA 255



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           +PP PP   P + APPV  SP       P P
Sbjct: 182 SPPVPPSPAPPSPAPPVPPSPAPPSPAPPVP 212



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           APP P   VP + +PPV  SP       P P+
Sbjct: 151 APPSPSPPVPPSPSPPVPPSPAPPSPTPPSPS 182



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           +PP PP   P + APP+  SP       P P
Sbjct: 130 SPPAPPSPSPPSPAPPLPPSPAPPSPSPPVP 160



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           APP PP   P + +PP   SP       P P
Sbjct: 117 APPSPPSPAPPSPSPPAPPSPSPPSPAPPLP 147

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>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2|
          Length = 916

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
 Frame = +1

Query: 88  SSRKFPNPRQRRPKSSLLGPARRGDDDVHGGPRRVGHQL--DQAGHGYSPRPRRGEVSTG 261
           S    P P   RP S  +G  R G     GG  R G Q     AG G     +R     G
Sbjct: 193 SPSNIPRPAPPRPGSPRIGAPRPGGGQRQGGGGRPGFQQRPGSAGGGAGGGLQR----PG 248

Query: 262 GAAA---SGTDLGGRGG 303
           GA A   SG   GG GG
Sbjct: 249 GAGAGGFSGPRTGGGGG 265

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>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3|
          Length = 404

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
 Frame = +1

Query: 115 QRRPKSSLLGPAR---RGDDDVHGGPRRVG------HQLDQAGHGYSPRPRRGEVSTGGA 267
           ++R +  LL PAR   RG++   GG  ++G      +  ++ G    PRP R E  +GG 
Sbjct: 11  RKRGRPQLLPPARPAARGEE-ADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGG 69

Query: 268 AASGTDLGGRGG 303
             S   LGG  G
Sbjct: 70  GGS-AGLGGPAG 80

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>DPOA2_RAT (O89043) DNA polymerase alpha subunit B (DNA polymerase alpha 70|
           kDa subunit) (DNA polymerase subunit II)
          Length = 600

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 223 YSPRPRRGEVSTGGAAASGTDLGGRGGA 306
           YS R  RGEV T   +A G    GRGG+
Sbjct: 161 YSSRTNRGEVVTTFGSAQGVSWSGRGGS 188

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>HOL3_HOLDI (Q25055) Holotricin-3 precursor|
          Length = 104

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 172 HGGPRRVGHQLDQAG-HGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           HGG    GH   Q G HG+ P    G    GG    G   GG GG
Sbjct: 31  HGGGHGGGHGNGQGGGHGHGPGGGFGGGHGGGHGGGGRGGGGSGG 75

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSP 243
           PP PP S+P+ AAP +++SP
Sbjct: 778 PPPPPPSMPQQAAPAMKSSP 797

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>DPOA2_HUMAN (Q14181) DNA polymerase alpha subunit B (DNA polymerase alpha 70|
           kDa subunit)
          Length = 598

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 223 YSPRPRRGEVSTGGAAASGTDLGGRGGA 306
           Y+ R  RGEV T    A G    GRGGA
Sbjct: 161 YNSRSNRGEVVTSFGLAQGVSWSGRGGA 188

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>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference|
           protein 3)
          Length = 980

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           PPRP  + P+A +P  + SPRR     P P
Sbjct: 254 PPRPTPATPDATSPTSKGSPRRPPPPPPLP 283

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>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)|
          Length = 443

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 299 PRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           P+PP   P A  PP   SP +     P PA
Sbjct: 109 PQPPAPTPAAPPPPSSASPPQNASNNPTPA 138

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>RL3_PSEAE (Q9HWD5) 50S ribosomal protein L3|
          Length = 211

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 162 VAATRGPQERGFGSTLPRIGEFATGNFGCGLGIWE-GCGEERRASG 28
           V  T G + R    T  + G FA  N   G G+WE   GEE+ A+G
Sbjct: 49  VQVTAG-ERRASRVTKAQAGHFAKANVAAGRGVWEFRLGEEQYAAG 93

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>ZN580_HUMAN (Q9UK33) Zinc finger protein 580 (LDL-induced EC protein)|
          Length = 172

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 290 PRSVPEAAAPPVETSPRRGRGEYPCP 213
           PR  P+  APP E  PR+G   Y CP
Sbjct: 73  PRGPPQREAPPGEPGPRKG---YSCP 95

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>PNRC2_MOUSE (Q9CR73) Proline-rich nuclear receptor coactivator 2|
          Length = 140

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 103 PNPRQRRPKSSLLGPARRGDDDVHGGPRRVGHQLDQAGHGYSP 231
           P+P+ R    +     R+   D +    ++ H+  + GHGY+P
Sbjct: 10  PDPQSRNASKNQEQQNRQKSKDQNSSQTKIAHKKKERGHGYNP 52

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>PKND_CHLMU (Q9PK92) Serine/threonine-protein kinase pknD (EC 2.7.11.1)|
          Length = 934

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 177 SVNIIVAATRGPQERGFGSTLPRIGEFATGNFGCGLGIW 61
           SV +  + T+   + G G   P   E   G F CG G+W
Sbjct: 351 SVRVECSVTKSSVQEGVGIFFPPSKEADKGEFYCGYGLW 389

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>HXD3_CHICK (O93353) Homeobox protein Hox-D3|
          Length = 413

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           APP+PP +      PP   SP +     P PA
Sbjct: 89  APPQPPPAPQAQPPPPSSASPSQNASSNPAPA 120

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>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3|
          Length = 413

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           APP+PP +      PP   SP +     P PA
Sbjct: 89  APPQPPPAPQAQPPPPSSASPSQNASSNPAPA 120

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>CD5R2_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precursor (CDK5|
           activator 2) (Cyclin-dependent kinase 5 regulatory
           subunit 2) (P39) (P39I)
          Length = 369

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSPRR 237
           PP PP   P+AA P   +SPRR
Sbjct: 155 PPPPPPPAPQAAPPAPGSSPRR 176

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>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6|
          Length = 880

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +1

Query: 196 HQLDQAG----HGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           H L +AG    H +    RR  +S  GA +S +  GGRGG
Sbjct: 634 HALARAGSPMEHHHLLHHRRASLSPSGAVSSASGAGGRGG 673

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>SOX8_MOUSE (Q04886) Transcription factor SOX-8|
          Length = 464

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 RVGHQLDQAGHGYSPRPRRGEVSTGGAAA-SGTDLGGRGG 303
           RV H+ D   + Y PR RR  V TG + + SGT+LG   G
Sbjct: 156 RVQHKKDHPDYKYQPR-RRKSVKTGRSDSDSGTELGHHPG 194

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>DHN3_PEA (P28641) Dehydrin DHN3|
          Length = 232

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +1

Query: 142 GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRG 300
           G   RG D   G     G        GY  +P  G  +TG    +GT  GG G
Sbjct: 61  GQQHRGVDQTTGYGTHTG-----GVGGYGTKPEYGSTNTGSGYGTGTGYGGSG 108

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>DHN2_PEA (P28640) Dehydrin DHN2|
          Length = 232

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/53 (32%), Positives = 20/53 (37%)
 Frame = +1

Query: 142 GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRG 300
           G   RG D   G     G        GY  +P  G  +TG    +GT  GG G
Sbjct: 59  GQQHRGVDQTTGYGTHTG-----GVGGYGTKPEYGSTNTGSGYGTGTGYGGSG 106

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>V70K_TYMVA (P20131) 69 kDa protein|
          Length = 628

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSPRRGRGEYP 219
           PP PPR +P  A PP   SP R  G  P
Sbjct: 435 PPPPPRRLPSPATPP--QSPLRDLGRTP 460

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>KRA61_RABIT (Q02957) Keratin, glycine/tyrosine-rich of hair|
          Length = 79

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 99 FATGNFGCGLGIWEGCGEERRASG 28
          +  G  GCGLG + GCG  R   G
Sbjct: 23 YGYGGLGCGLGSYYGCGYRRLGCG 46

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>KTNA1_STRPU (O61577) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin)
          Length = 516

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +1

Query: 115 QRRPKSSLLGPARRGDDDVHGGPRRVGHQLDQAGHGYSPR--PRRGEVSTGGAAASGTDL 288
           Q   K +   PAR  D DV   P  V H+        + +  PRR E S     A G D 
Sbjct: 98  QHAAKPAAAEPAR--DPDVWPPPTPVDHRPSPPYQRAARKDPPRRSEPSKPANRAPGNDR 155

Query: 289 GGRG 300
           GGRG
Sbjct: 156 GGRG 159



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 103 PNPRQRRPKSSLLGPARRGDDDVHGGPRRVGHQL---DQAGHGYSPRPRRGEVSTGGAAA 273
           P P   RP       AR+ D      P +  ++    D+ G G  P  RRG+  +GG   
Sbjct: 118 PTPVDHRPSPPYQRAARK-DPPRRSEPSKPANRAPGNDRGGRG--PSDRRGDARSGG--- 171

Query: 274 SGTDLGGRGGA 306
                GGRGGA
Sbjct: 172 -----GGRGGA 177

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>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +1

Query: 91  SRKFPNPRQRRPKSSLLGPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAA 270
           SR   + R  R  SS    +  G     G  + +GH    +G G SP P RG   +G   
Sbjct: 496 SRSGQSSRGERQGSSAGSSSSYGQHG-SGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQ 554

Query: 271 ASGTDLGGRG 300
           +S     G G
Sbjct: 555 SSSYGPHGYG 564



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 175  GGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRG 300
            G  + +GH    +G G SP P RG   +G   +S     G G
Sbjct: 2399 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSG 2440



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 175  GGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRG 300
            G  + +GH    +G G SP P RG   +G   +S     G G
Sbjct: 1459 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSG 1500



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 175  GGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRG 300
            G  + +GH    +G G SP P RG   +G   +S     G G
Sbjct: 1929 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSG 1970

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>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
           APP PP   P AA PP   S R G G  P P
Sbjct: 309 APPPPPSRAPTAAPPPPPPS-RPGVGAPPPP 338



 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 305 APPRPPRSVPEAAAPPVETSPRRGRGEYPCPA 210
           APP PP   P    PP    P  G  + P PA
Sbjct: 372 APPPPPPPPPPPGPPPPPGLPSDGDHQVPTPA 403

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>DPOA2_MOUSE (P33611) DNA polymerase alpha subunit B (DNA polymerase alpha 70|
           kDa subunit)
          Length = 600

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 223 YSPRPRRGEVSTGGAAASGTDLGGRGGA 306
           Y+ R  RGEV T   +A G    GRGG+
Sbjct: 161 YTSRTNRGEVVTTFGSAQGLSWSGRGGS 188

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>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -2

Query: 305  APPRPPR---SVPEAAAPPVETSPRRGRG 228
            +PP PP    S  +A  PP +T PRR RG
Sbjct: 2823 SPPTPPSQALSSLKAVGPPPQTPPRRHRG 2851

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>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit|
           (Voltage-gated calcium channel alpha subunit Cav2.2)
           (Calcium channel, L type, alpha-1 polypeptide isoform 5)
           (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 299 PRPPRSVPEAAAPPVETSPRRGRGEYP 219
           PRP RS  + AA P E    RGRG  P
Sbjct: 886 PRPHRSHSKEAAGPPEARSERGRGPGP 912

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>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)|
          Length = 1147

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/55 (34%), Positives = 20/55 (36%)
 Frame = +1

Query: 142  GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGGA 306
            GP   G     GGP   G      G    P   RG     GA   G  +GG GGA
Sbjct: 997  GPGMGGPGAGRGGPGMGGPGGPGRGGPGGPGAGRGGPGGPGAGRGGPGMGGPGGA 1051

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>INVS_CANFA (Q6JAN1) Inversin (Inversion of embryo turning protein)|
            (Nephrocystin-2)
          Length = 1081

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
 Frame = +1

Query: 82   KISSRKFPNPRQRRPKSSLLGPARRGD---DDVHGGPRRVGHQLDQ--------AGHGYS 228
            K +S+K      R  + S  G +R G    + VH GP  + H+  +        AG  YS
Sbjct: 788  KCTSQKRRVQELRGGRHSPAGSSRPGSAKGEVVHAGPNALQHRTPRNKTTQDKLAGGIYS 847

Query: 229  PRPRRGEVSTGGAAASGT 282
              P+  EV   G   SGT
Sbjct: 848  DLPQNTEVLRSGVRKSGT 865

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>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/44 (38%), Positives = 18/44 (40%)
 Frame = +1

Query: 172 HGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           +GG RR G      G GYS R   G    GG    G   GG  G
Sbjct: 115 YGGGRREGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEG 158

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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSP 243
           PP PP S+P+  AP +++SP
Sbjct: 780 PPPPPPSMPQQTAPAMKSSP 799

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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +1

Query: 142 GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           GPA+RG    +GGP   G    Q G+G       G+   G     G   GG GG
Sbjct: 231 GPAQRGGPGAYGGPGGGG----QGGYG-------GDYGGGWGQQGGGGQGGWGG 273

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>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 214 GHGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           G+G   R R G +  GG    G+  GGRGG
Sbjct: 366 GNGRGGRGRGGPMGRGGYGGGGSGGGGRGG 395

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>DHN1_PEA (P28639) Dehydrin DHN1|
          Length = 197

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +1

Query: 142 GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLGGRG 300
           G   RG D   G     G        GY   P  G  +TG    +GT  GG G
Sbjct: 60  GQQHRGVDQTTGYGTHTG-----GVGGYGTNPEYGNTNTGSGYGTGTGYGGSG 107

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>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 214 GHGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           G+G   R R G +  GG    G+  GGRGG
Sbjct: 373 GNGRGGRGRGGPMGRGGYGGGGSGGGGRGG 402

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>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 214 GHGYSPRPRRGEVSTGGAAASGTDLGGRGG 303
           G+G   R R G +  GG    G+  GGRGG
Sbjct: 380 GNGRGGRGRGGPMGRGGYGGGGSGGGGRGG 409

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>IF2_BURPS (Q63TP8) Translation initiation factor IF-2|
          Length = 975

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 109 PRQRRPKSSLLGPARR--GDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGT 282
           P  ++P S    PA    GD     G  + G Q D A        RRG + T G ++ G 
Sbjct: 312 PAAKKPASGAPAPAAAPAGDRTKKPGTGKSGWQDDAA-------KRRG-IKTRGDSSGGV 363

Query: 283 DLGGRGG 303
           D G RGG
Sbjct: 364 DRGWRGG 370

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>IF2_BURP1 (Q3JSY9) Translation initiation factor IF-2|
          Length = 975

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 109 PRQRRPKSSLLGPARR--GDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGT 282
           P  ++P S    PA    GD     G  + G Q D A        RRG + T G ++ G 
Sbjct: 312 PAAKKPASGAPAPAAAPAGDRTKKPGTGKSGWQDDAA-------KRRG-IKTRGDSSGGV 363

Query: 283 DLGGRGG 303
           D G RGG
Sbjct: 364 DRGWRGG 370

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>IF2_BURMA (Q62KK9) Translation initiation factor IF-2|
          Length = 975

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 109 PRQRRPKSSLLGPARR--GDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGT 282
           P  ++P S    PA    GD     G  + G Q D A        RRG + T G ++ G 
Sbjct: 312 PAAKKPASGAPAPAAAPAGDRTKKPGTGKSGWQDDAA-------KRRG-IKTRGDSSGGV 363

Query: 283 DLGGRGG 303
           D G RGG
Sbjct: 364 DRGWRGG 370

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>L52_ADEG1 (Q64753) Late L1 52 kDa protein|
          Length = 378

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSPRRGRGEY 222
           PP PPR   + A P    +P  GRG++
Sbjct: 36  PPSPPRYPAQHAYPGAGATPTAGRGDF 62

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>DED1_NEUCR (Q9P6U9) ATP-dependent RNA helicase ded-1 (EC 3.6.1.-)|
          Length = 688

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = +1

Query: 142 GPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRG---EVSTGGA-AASGTDLGGRGGA 306
           GP   G+    GGP   G +  Q      PRP+ G       G A A +G   GG GG+
Sbjct: 71  GPGGGGNWPAPGGPPGPGFEGQQGAGWGGPRPQGGFNPNAYRGNAGAGAGAGAGGGGGS 129

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>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat p
          Length = 2517

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 305  APPRPPRSVPEAAAPPVETSPRRGRGEYPCP 213
            APP P    PE+ AP    S  RG+   P P
Sbjct: 998  APPPPQNLQPESDAPQQPGSSPRGKSRSPAP 1028

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>ATKC_MYXXA (Q93MV4) Potassium-transporting ATPase C chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase C chain) (ATP
           phosphohydrolase [potassium-transporting] C chain)
           (Potassium-binding and translocating subunit C)
          Length = 211

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 178 GPRRVGHQLDQAGHGYSPRPRRGEVSTGGAAASGTDLG 291
           G   +G    +AG+ + PRP        GAA+SG++LG
Sbjct: 53  GSALIGQGFTRAGY-FHPRPSAAGAGYDGAASSGSNLG 89

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>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = +1

Query: 88  SSRKFPN--PRQRRPKSSLLGPARRGDDDVHGGPRRVGHQLDQAGHGYSPRPRRGEVSTG 261
           S R+ P   P  RRPK+   GPAR             G   +      SP P   E   G
Sbjct: 599 SGRRAPEDAPAARRPKAPP-GPARAPP----------GQPAEPDAPRSSPGPGAREEGAG 647

Query: 262 GAAASGTDLGGRG 300
           GAA      GGRG
Sbjct: 648 GAATPEDGAGGRG 660

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 302 PPRPPRSVPEAAAPPVETSPR 240
           PPRPP  +P    PP+   PR
Sbjct: 334 PPRPPPGMPHPGPPPMGMPPR 354


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,376,882
Number of Sequences: 219361
Number of extensions: 611000
Number of successful extensions: 3519
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 2836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3463
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result