>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  103 bits (52), Expect = 3e-19
 Identities = 61/64 (95%)
 Strand = Plus / Minus

                                                                           
Query: 158     gcgacgatgatgttcacggagggcctcgacgagtcggccatcagctggatcaagcagggc 217
               |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 5517925 gcgaggatgatgttcacggaggggctcgacgagtcggcgatcagctggatcaagcagggc 5517866

                   
Query: 218     acgg 221
               ||||
Sbjct: 5517865 acgg 5517862



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 69       ccaagccacagccaaaatttc 89
                |||||||||||||||||||||
Sbjct: 32914733 ccaagccacagccaaaatttc 32914753



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 5        ctctactactagtctactac 24
                ||||||||||||||||||||
Sbjct: 33626194 ctctactactagtctactac 33626175



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 246     cgaggtctccactggcggagcggctgcc 273
               ||||||| || |||||||||||||||||
Sbjct: 5517840 cgaggtcgccgctggcggagcggctgcc 5517813

>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0026H03
          Length = 151827

 Score =  103 bits (52), Expect = 3e-19
 Identities = 61/64 (95%)
 Strand = Plus / Minus

                                                                         
Query: 158   gcgacgatgatgttcacggagggcctcgacgagtcggccatcagctggatcaagcagggc 217
             |||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 62660 gcgaggatgatgttcacggaggggctcgacgagtcggcgatcagctggatcaagcagggc 62601

                 
Query: 218   acgg 221
             ||||
Sbjct: 62600 acgg 62597



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 246   cgaggtctccactggcggagcggctgcc 273
             ||||||| || |||||||||||||||||
Sbjct: 62575 cgaggtcgccgctggcggagcggctgcc 62548

>ref|XM_464489.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3009

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                     
Query: 164 atgatgttcacggagggcctcgacgagtcggccatcagctggatcaagcagggcacgg 221
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1   atgatgttcacggaggggctcgacgagtcggcgatcagctggatcaagcagggcacgg 58



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 246 cgaggtctccactggcggagcggctgcc 273
           ||||||| || |||||||||||||||||
Sbjct: 80  cgaggtcgccgctggcggagcggctgcc 107

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 3        tcctctactactagtctactacc 25
                |||||||||||||||||||||||
Sbjct: 40025053 tcctctactactagtctactacc 40025031

>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0413C03
          Length = 162161

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 3      tcctctactactagtctactacc 25
              |||||||||||||||||||||||
Sbjct: 116504 tcctctactactagtctactacc 116482

>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
              sequence
          Length = 178692

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 6      tctactactagtctactaccat 27
              ||||||||||||||||||||||
Sbjct: 146953 tctactactagtctactaccat 146974

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 6        tctactactagtctactaccat 27
                ||||||||||||||||||||||
Sbjct: 17527678 tctactactagtctactaccat 17527657



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 7        ctactactagtctactacca 26
                ||||||||||||||||||||
Sbjct: 18547096 ctactactagtctactacca 18547077

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 6        tctactactagtctactaccat 27
                ||||||||||||||||||||||
Sbjct: 17536718 tctactactagtctactaccat 17536697



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 7        ctactactagtctactacca 26
                ||||||||||||||||||||
Sbjct: 18557149 ctactactagtctactacca 18557130

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 137     tcctggggcccgcgcgtcgcggcga 161
               |||||||||||| ||||||||||||
Sbjct: 2001928 tcctggggcccgagcgtcgcggcga 2001904

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 275     ctgggacagatctcggagggcgcgg 299
               ||||| |||||||||||||||||||
Sbjct: 2439621 ctgggccagatctcggagggcgcgg 2439645

>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1534_E09
          Length = 126209

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    ccaagccacagccaaaatttc 89
             |||||||||||||||||||||
Sbjct: 69474 ccaagccacagccaaaatttc 69494

>ref|XM_482551.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 cgccctcctctcctccccgc 53
          ||||||||||||||||||||
Sbjct: 21 cgccctcctctcctccccgc 40

>ref|XM_468211.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 725

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   ctctactactagtctactac 24
           ||||||||||||||||||||
Sbjct: 669 ctctactactagtctactac 688

>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ctactactagtctactacca 26
             ||||||||||||||||||||
Sbjct: 50107 ctactactagtctactacca 50088

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       cgccctcctctcctccccgc 53
                ||||||||||||||||||||
Sbjct: 21035782 cgccctcctctcctccccgc 21035801

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 171     tcacggagggcctcgacgagtcggccatcagc 202
               |||||||||||  ||||||||||||| |||||
Sbjct: 4009068 tcacggagggcggcgacgagtcggccctcagc 4009099

>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0431A03
          Length = 149500

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     cgccctcctctcctccccgc 53
              ||||||||||||||||||||
Sbjct: 101957 cgccctcctctcctccccgc 101976

>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1046_F07
          Length = 114184

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ctctactactagtctactac 24
             ||||||||||||||||||||
Sbjct: 96865 ctctactactagtctactac 96846

>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0413H11
          Length = 147655

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   cgccctcctctcctccccgc 53
            ||||||||||||||||||||
Sbjct: 6992 cgccctcctctcctccccgc 7011

>dbj|AK119426.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H08,
          full insert sequence
          Length = 3395

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 cgccctcctctcctccccgc 53
          ||||||||||||||||||||
Sbjct: 21 cgccctcctctcctccccgc 40

>dbj|AK107549.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A07, full
           insert sequence
          Length = 841

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   ctactactagtctactacca 26
           ||||||||||||||||||||
Sbjct: 219 ctactactagtctactacca 200

>dbj|AK100791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121A22, full
           insert sequence
          Length = 1462

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   ctactactagtctactacca 26
           ||||||||||||||||||||
Sbjct: 223 ctactactagtctactacca 204

>dbj|AK062787.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B10, full
           insert sequence
          Length = 725

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   ctctactactagtctactac 24
           ||||||||||||||||||||
Sbjct: 669 ctctactactagtctactac 688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,255,402
Number of Sequences: 3902068
Number of extensions: 2255402
Number of successful extensions: 51711
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51249
Number of HSP's gapped (non-prelim): 462
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)