ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC) 32 0.49
2YHL1_EBV (P03181) Hypothetical protein BHLF1 29 4.2

>HDC_HUMAN (Q9UBI9) Headcase protein homolog (hHDC)|
          Length = 543

 Score = 32.0 bits (71), Expect = 0.49
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 4   AAGSPGAPARLGASSIGVGAATRVGAPPYPAAGRIRPES 120
           AAG+PGA    GA   G GAA    A    AAG  + E+
Sbjct: 54  AAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAGDAKNEA 92



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>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  SPGAPARLGASSIGVGAATRVGAPPYPAAG 102
           +PGAP    A   G GAA   GA P+P  G
Sbjct: 563 APGAPGTPAAPGPGGGAAVPSGATPHPERG 592



 Score = 28.9 bits (63), Expect = 4.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  SPGAPARLGASSIGVGAATRVGAPPYPAAG 102
           +PGAP    A   G GAA   GA P+P  G
Sbjct: 438 APGAPGTPAAPGPGGGAAVPSGATPHPERG 467



 Score = 28.9 bits (63), Expect = 4.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  SPGAPARLGASSIGVGAATRVGAPPYPAAG 102
           +PGAP    A   G GAA   GA P+P  G
Sbjct: 313 APGAPGTPAAPGPGGGAAVPSGATPHPERG 342



 Score = 28.9 bits (63), Expect = 4.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  SPGAPARLGASSIGVGAATRVGAPPYPAAG 102
           +PGAP    A   G GAA   GA P+P  G
Sbjct: 188 APGAPGTPAAPGPGGGAAVPSGATPHPERG 217


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,762,436
Number of Sequences: 219361
Number of extensions: 203746
Number of successful extensions: 1031
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 80,573,946
effective HSP length: 16
effective length of database: 77,064,170
effective search space used: 1849540080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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