ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl40a11 |
|---|---|
| Clone Library Name | barley_pub |
>JMJ2_SCHPO (Q9US53) Jumonji/ARID domain-containing protein 2| Length = 715 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/30 (66%), Positives = 23/30 (76%) Frame = +2 Query: 335 APVFTPTEEEFKDAIGYITSIRPQAEKYGI 424 APVF P +EEF+D+IGYI I P EKYGI Sbjct: 60 APVFYPDKEEFQDSIGYINKIAPIGEKYGI 89
>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1560 Score = 44.3 bits (103), Expect = 1e-04 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 332 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 + PVF P+ EF+D +GYI IRP AEK GIC Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGIC 44
>JAD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1548 Score = 44.3 bits (103), Expect = 1e-04 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 332 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 + PVF P+ EF+D +GYI IRP AEK GIC Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGIC 44
>JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX protein)| (Xe169 protein) Length = 1554 Score = 44.3 bits (103), Expect = 1e-04 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 332 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 + PVF P+ EF+D +GYI IRP AEK GIC Sbjct: 13 ECPVFEPSWAEFRDPLGYIAKIRPIAEKSGIC 44
>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)| Length = 1535 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 332 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 + PVF P+ EF+D +GYI IRP AEK GIC Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGIC 44
>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1539 Score = 43.9 bits (102), Expect = 2e-04 Identities = 19/32 (59%), Positives = 23/32 (71%) Frame = +2 Query: 332 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 + PVF P+ EF+D +GYI IRP AEK GIC Sbjct: 13 ECPVFEPSWAEFQDPLGYIAKIRPIAEKSGIC 44
>JARD2_MOUSE (Q62315) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1234 Score = 42.4 bits (98), Expect = 5e-04 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +2 Query: 326 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 +D+ PV P+ +EF D + YI S+R Q EKYG+C Sbjct: 552 MDEIPVLRPSAKEFHDPLIYIESVRAQVEKYGMC 585
>JAD1A_HUMAN (P29375) Jumonji/ARID domain-containing protein 1A| (Retinoblastoma-binding protein 2) (RBBP-2) Length = 1722 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/32 (56%), Positives = 22/32 (68%) Frame = +2 Query: 332 DAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 + PVF P+ EEF D + +I IRP AEK GIC Sbjct: 18 ECPVFEPSWEEFTDPLSFIGRIRPLAEKTGIC 49
>JARD2_HUMAN (Q92833) Jumonji protein (Jumonji/ARID domain-containing protein 2)| Length = 1246 Score = 40.8 bits (94), Expect = 0.001 Identities = 16/34 (47%), Positives = 24/34 (70%) Frame = +2 Query: 326 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGIC 427 +D+ PV P+ +EF D + YI S+R Q EK+G+C Sbjct: 554 MDEIPVLRPSAKEFHDPLIYIESVRAQVEKFGMC 587
>ITA7_MOUSE (Q61738) Integrin alpha-7 precursor [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1179 Score = 30.4 bits (67), Expect = 1.8 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -2 Query: 393 LVMYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAEAGS 253 +V+ P L +VG+K+ S+SG D G H+P + G A+ + Sbjct: 465 VVVKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAA 511
>Y7141_STRCO (Q9FBV0) Putative NADH dehydrogenase/NAD(P)H nitroreductase SCO7141| (EC 1.-.-.-) Length = 202 Score = 30.0 bits (66), Expect = 2.4 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +2 Query: 299 HPDESNRPEIDDAPVFT--PTEEEFKDAIGYITSIRPQAEKY 418 H DE NRP+ APV + F + + ++ +RP+ ++Y Sbjct: 74 HLDEGNRPKSASAPVVAVLAVDHRFHEHLPHVLPVRPEMKEY 115
>ITA7_RAT (Q63258) Integrin alpha-7 (H36-alpha7) [Contains: Integrin alpha-7| heavy chain; Integrin alpha-7 light chain] Length = 1106 Score = 29.6 bits (65), Expect = 3.1 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -2 Query: 393 LVMYPIASLNSSSVGVKTGASSISGLFDSSGCHFPYVCDGPAAEAGS 253 +V P L +VG+K+ S+SG D G H+P + G A+ + Sbjct: 393 VVTKPSQVLEGEAVGIKSFGYSLSGGLDVDGNHYPDLLVGSLADTAA 439
>RPH1_YEAST (P39956) DNA damage-responsive transcriptional repressor RPH1| Length = 796 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 Query: 326 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGI 424 + PVF PT E+F+D Y +I K G+ Sbjct: 11 VGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGV 43
>YJ89_YEAST (P47156) Hypothetical 85.0 kDa protein in STE24-ATP2 intergenic| region Length = 728 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/33 (33%), Positives = 22/33 (66%) Frame = +2 Query: 326 IDDAPVFTPTEEEFKDAIGYITSIRPQAEKYGI 424 +++ P PTE+EFK+ I Y+++ P ++ G+ Sbjct: 1 MEEIPALYPTEQEFKNPIDYLSN--PHIKRLGV 31
>AROC_LEGPL (Q5WUE6) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 352 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = +2 Query: 314 NRPEIDDAPVFTPTEEEFKDAIGYITSIRPQAEKYG 421 N EID P F P ++ ++ Y+ +R Q + G Sbjct: 169 NENEIDKNPFFCPNNKQIQELADYVDRLRRQGDSVG 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,400,241 Number of Sequences: 219361 Number of extensions: 829577 Number of successful extensions: 2215 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2176 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2215 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
