ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 1e-37
2gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome 46 0.093
5ref|XM_538534.2| PREDICTED: Canis familiaris similar to germ cel... 46 0.093
6gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosom... 42 1.5
7ref|NM_205418.1| Gallus gallus acetylcholinesterase (ACHE), mRNA 42 1.5
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AK110959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
15gb|U03472.1|GGU03472 Gallus gallus acetylcholinesterase mRNA, co... 42 1.5
16gb|AC118588.6| Mus musculus chromosome 15, clone RP24-576D3, com... 40 5.7
17ref|XM_476089.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
18ref|NM_197815.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.7
19ref|NM_191268.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
20ref|XM_478020.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
21gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
22gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
23gb|AC147090.3| Pan troglodytes BAC clone RP43-58D11 from 7, comp... 40 5.7
24ref|XM_676388.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.7
25gb|AY252634.1| Gerridae sp. WCW-Wellsboro 28S ribosomal RNA gene... 40 5.7
26gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 5.7
27gb|AC127591.4| Mus musculus BAC clone RP23-315I14 from chromosom... 40 5.7
28gb|AC005008.2| Homo sapiens BAC clone GS1-52G5 from 7, complete ... 40 5.7
29gb|AC142294.1| Pan troglodytes BAC clone RP43-73M4 from 7, compl... 40 5.7
30emb|AL356740.19| Human DNA sequence from clone RP11-120K24 on ch... 40 5.7
31gb|AC153791.2| Mus musculus chromosome 15, clone RP24-269A21, co... 40 5.7
32ref|XM_965182.1| PREDICTED: Tribolium castaneum similar to CG908... 40 5.7
33gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.7
34gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen... 40 5.7
35gb|AC159577.3| Macropus eugenii clone ME_KBa-436J11, complete se... 40 5.7
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
37dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
40dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
42gb|AY648147.1| Trepobates subnitidus 28S ribosomal RNA gene, par... 40 5.7
43dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 5.7
44dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
45dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
46dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
47dbj|AK111322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
48gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete seq... 40 5.7
49emb|AL122125.4|CNS01DT0 Human chromosome 14 DNA sequence BAC R-1... 40 5.7
50gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.7
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
52gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
53gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7 
>dbj|AK066463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065F17, full
           insert sequence
          Length = 3421

 Score =  165 bits (83), Expect = 1e-37
 Identities = 125/139 (89%)
 Strand = Plus / Plus

                                                                       
Query: 288 atggaaagtggcatccagatgaatcgaacagacctgaaattgatgatgctcctgttttta 347
           ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |
Sbjct: 217 atggaaagtggcatccacatgaatcgtacagacctgaaattgatgatgcccctgttttca 276

                                                                       
Query: 348 ctccaaccgaggaggaattcaaagatgcaattggatacattactagcattcgtcctcaag 407
           ||||||| || ||||| || |||||| ||||| |||| ||||| ||||||||||| ||||
Sbjct: 277 ctccaacggaagaggagtttaaagatccaattagatatattacgagcattcgtccccaag 336

                              
Query: 408 cagaaaaatatggaatttg 426
           ||||||| |||||||||||
Sbjct: 337 cagaaaagtatggaatttg 355
to top
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01,
              complete sequence
          Length = 142752

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                          
Query: 281    cagacatatggaaagtggcatccagatgaatcgaacagacctgaaattgatgatgctcct 340
              |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 128285 cagacaaatggaaagtggcatccacatgaatcgtacagacctgaaattgatgatgcccct 128226

                            
Query: 341    gtttttactccaac 354
              ||||| ||||||||
Sbjct: 128225 gttttcactccaac 128212



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 368    aaagatgcaattggatacattactagcattcgtcctcaagcagaaaaatatggaatttg 426
              |||||| ||||| |||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 128113 aaagatccaattagatatattacgagcattcgtccccaagcagaaaagtatggaatttg 128055
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                            
Query: 281      cagacatatggaaagtggcatccagatgaatcgaacagacctgaaattgatgatgctcct 340
                |||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct: 13444822 cagacaaatggaaagtggcatccacatgaatcgtacagacctgaaattgatgatgcccct 13444763

                              
Query: 341      gtttttactccaac 354
                ||||| ||||||||
Sbjct: 13444762 gttttcactccaac 13444749



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 368      aaagatgcaattggatacattactagcattcgtcctcaagcagaaaaatatggaatttg 426
                |||||| ||||| |||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 13444650 aaagatccaattagatatattacgagcattcgtccccaagcagaaaagtatggaatttg 13444592



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 174      gggaggaggagggcggcggc 193
                ||||||||||||||||||||
Sbjct: 28814723 gggaggaggagggcggcggc 28814704
to top
>gb|AF448724.1| Sinorhizobium meliloti phage PBC5, complete genome
          Length = 57416

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 133   ctcgcccgccgcgcccatggtttcctcgccc 163
             |||| ||||||||| ||||||||||||||||
Sbjct: 35429 ctcggccgccgcgcgcatggtttcctcgccc 35459
to top
>ref|XM_538534.2| PREDICTED: Canis familiaris similar to germ cell-less protein,
           transcript variant 1 (LOC481414), mRNA
          Length = 2931

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 244 agcctcgccggagccggcttccgcggccggg 274
           |||| |||||||||||||||||| |||||||
Sbjct: 48  agccccgccggagccggcttccggggccggg 78
to top
>gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosome ul, complete sequence
          Length = 205759

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 80     ggtgtgaggacttctctcctt 100
              |||||||||||||||||||||
Sbjct: 179270 ggtgtgaggacttctctcctt 179290
to top
>ref|NM_205418.1| Gallus gallus acetylcholinesterase (ACHE), mRNA
          Length = 4536

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 agggaggaggagggcggcggc 193
           |||||||||||||||||||||
Sbjct: 830 agggaggaggagggcggcggc 850
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 174     gggaggaggagggcggcggcc 194
               |||||||||||||||||||||
Sbjct: 5045256 gggaggaggagggcggcggcc 5045236



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 174      gggaggaggagggcggcggc 193
                ||||||||||||||||||||
Sbjct: 16676914 gggaggaggagggcggcggc 16676933
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 174     gggaggaggagggcggcggcc 194
               |||||||||||||||||||||
Sbjct: 6474136 gggaggaggagggcggcggcc 6474116
to top
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_D05
          Length = 128178

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    gggaggaggagggcggcggcc 194
              |||||||||||||||||||||
Sbjct: 116129 gggaggaggagggcggcggcc 116109
to top
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   gggaggaggagggcggcggcc 194
             |||||||||||||||||||||
Sbjct: 86945 gggaggaggagggcggcggcc 86925
to top
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1118_E12
          Length = 119691

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  gggaggaggagggcggcggcc 194
            |||||||||||||||||||||
Sbjct: 1423 gggaggaggagggcggcggcc 1403
to top
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1307A11
          Length = 131538

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   gggaggaggagggcggcggcc 194
             |||||||||||||||||||||
Sbjct: 34749 gggaggaggagggcggcggcc 34729
to top
>dbj|AK110959.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A10, full
            insert sequence
          Length = 1334

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  gggaggaggagggcggcggcc 194
            |||||||||||||||||||||
Sbjct: 1042 gggaggaggagggcggcggcc 1022
to top
>gb|U03472.1|GGU03472 Gallus gallus acetylcholinesterase mRNA, complete cds
          Length = 4536

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 173 agggaggaggagggcggcggc 193
           |||||||||||||||||||||
Sbjct: 830 agggaggaggagggcggcggc 850
to top
>gb|AC118588.6| Mus musculus chromosome 15, clone RP24-576D3, complete sequence
          Length = 175210

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   aagcagaaaaatatggaatt 424
             ||||||||||||||||||||
Sbjct: 56936 aagcagaaaaatatggaatt 56955
to top
>ref|XM_476089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 327 ttgatgatgctcctgtttttactccaaccgaggaggaatt 366
           ||||||| |||||||||||   |||||| |||||||||||
Sbjct: 452 ttgatgaggctcctgttttctatccaacagaggaggaatt 491
to top
>ref|NM_197815.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0095C07.13), mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 ggaggaggagggcggcggcc 194
           ||||||||||||||||||||
Sbjct: 196 ggaggaggagggcggcggcc 215
to top
>ref|NM_191268.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1320

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 gggaggaggagggcggcggc 193
           ||||||||||||||||||||
Sbjct: 399 gggaggaggagggcggcggc 418
to top
>ref|XM_478020.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 234

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 gggaggaggagggcggcggc 193
           ||||||||||||||||||||
Sbjct: 94  gggaggaggagggcggcggc 113
to top
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
           OSJNBb0122P24, complete sequence
          Length = 136104

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 ggaggaggagggcggcggcc 194
           ||||||||||||||||||||
Sbjct: 205 ggaggaggagggcggcggcc 186
to top
>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ggaggaggagggcggcggcc 194
             ||||||||||||||||||||
Sbjct: 86248 ggaggaggagggcggcggcc 86229
to top
>gb|AC147090.3| Pan troglodytes BAC clone RP43-58D11 from 7, complete sequence
          Length = 200913

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    agcagaaaaatatggaattt 425
              ||||||||||||||||||||
Sbjct: 118198 agcagaaaaatatggaattt 118179
to top
>ref|XM_676388.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8211.2), mRNA
          Length = 5154

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 349 tccaaccgaggaggaattca 368
           ||||||||||||||||||||
Sbjct: 237 tccaaccgaggaggaattca 256
to top
>gb|AY252634.1| Gerridae sp. WCW-Wellsboro 28S ribosomal RNA gene, partial sequence
          Length = 517

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 164 gcctcccctagggaggaggagggc 187
           |||| |||||||||||||||||||
Sbjct: 74  gccttccctagggaggaggagggc 97
to top
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    atagcttcttctgaccacca 126
              ||||||||||||||||||||
Sbjct: 847866 atagcttcttctgaccacca 847847
to top
>gb|AC127591.4| Mus musculus BAC clone RP23-315I14 from chromosome 15, complete
           sequence
          Length = 182619

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 405 aagcagaaaaatatggaatt 424
           ||||||||||||||||||||
Sbjct: 21  aagcagaaaaatatggaatt 2
to top
>gb|AC005008.2| Homo sapiens BAC clone GS1-52G5 from 7, complete sequence
          Length = 91634

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   agcagaaaaatatggaattt 425
             ||||||||||||||||||||
Sbjct: 59171 agcagaaaaatatggaattt 59152
to top
>gb|AC142294.1| Pan troglodytes BAC clone RP43-73M4 from 7, complete sequence
          Length = 173444

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    agcagaaaaatatggaattt 425
              ||||||||||||||||||||
Sbjct: 154135 agcagaaaaatatggaattt 154116
to top
>emb|AL356740.19| Human DNA sequence from clone RP11-120K24 on chromosome 13 Contains the
              3' end of the ATP11A gene for ATPase Class VI type 11A, the
              5' end of the MCF2L gene for a MCF.2 cell line derived
              transforming sequence-like gene, a novel gene and eight CpG
              islands, complete sequence
          Length = 170928

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ggaggagggcggcggccctc 197
              ||||||||||||||||||||
Sbjct: 165655 ggaggagggcggcggccctc 165674
to top
>gb|AC153791.2| Mus musculus chromosome 15, clone RP24-269A21, complete sequence
          Length = 144965

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    aagcagaaaaatatggaatt 424
              ||||||||||||||||||||
Sbjct: 138275 aagcagaaaaatatggaatt 138256
to top
>ref|XM_965182.1| PREDICTED: Tribolium castaneum similar to CG9088-PA, isoform A
           (LOC658825), mRNA
          Length = 6585

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 ccaaccgaggaggaattcaa 369
           ||||||||||||||||||||
Sbjct: 139 ccaaccgaggaggaattcaa 158
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     ccggagccggcttccgcggc 270
               ||||||||||||||||||||
Sbjct: 4560340 ccggagccggcttccgcggc 4560321
to top
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
             sequence
          Length = 187707

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   ggaggaggagggcggcggcc 194
             ||||||||||||||||||||
Sbjct: 27100 ggaggaggagggcggcggcc 27081
to top
>gb|AC159577.3| Macropus eugenii clone ME_KBa-436J11, complete sequence
          Length = 23152

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 atagcttcttctgaccacca 126
           ||||||||||||||||||||
Sbjct: 772 atagcttcttctgaccacca 753
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     ggaggaggagggcggcggcc 194
               ||||||||||||||||||||
Sbjct: 7470593 ggaggaggagggcggcggcc 7470612
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 175      ggaggaggagggcggcggcc 194
                ||||||||||||||||||||
Sbjct: 22022556 ggaggaggagggcggcggcc 22022537
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 174      gggaggaggagggcggcggc 193
                ||||||||||||||||||||
Sbjct: 27619409 gggaggaggagggcggcggc 27619428
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 174      gggaggaggagggcggcggc 193
                ||||||||||||||||||||
Sbjct: 31628404 gggaggaggagggcggcggc 31628385
to top
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   gggaggaggagggcggcggc 193
             ||||||||||||||||||||
Sbjct: 42136 gggaggaggagggcggcggc 42117
to top
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    gggaggaggagggcggcggc 193
              ||||||||||||||||||||
Sbjct: 141427 gggaggaggagggcggcggc 141408
to top
>gb|AY648147.1| Trepobates subnitidus 28S ribosomal RNA gene, partial sequence
          Length = 558

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 164 gcctcccctagggaggaggagggc 187
           |||| |||||||||||||||||||
Sbjct: 467 gccttccctagggaggaggagggc 444
to top
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 256     gccggcttccgcggccgggc 275
               ||||||||||||||||||||
Sbjct: 1572250 gccggcttccgcggccgggc 1572269
to top
>dbj|AP006055.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0778G11
          Length = 59211

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   gggaggaggagggcggcggc 193
             ||||||||||||||||||||
Sbjct: 23592 gggaggaggagggcggcggc 23611
to top
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1115_C05
          Length = 146585

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   gggaggaggagggcggcggc 193
             ||||||||||||||||||||
Sbjct: 16826 gggaggaggagggcggcggc 16845
to top
>dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H13, full
           insert sequence
          Length = 4316

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 327 ttgatgatgctcctgtttttactccaaccgaggaggaatt 366
           ||||||| |||||||||||   |||||| |||||||||||
Sbjct: 651 ttgatgaggctcctgttttctatccaacagaggaggaatt 690
to top
>dbj|AK111322.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D06, full
           insert sequence
          Length = 692

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 175 ggaggaggagggcggcggcc 194
           ||||||||||||||||||||
Sbjct: 61  ggaggaggagggcggcggcc 42
to top
>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence
          Length = 153357

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    atagcttcttctgaccacca 126
              ||||||||||||||||||||
Sbjct: 150872 atagcttcttctgaccacca 150853
to top
>emb|AL122125.4|CNS01DT0 Human chromosome 14 DNA sequence BAC R-102G14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188849

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   gaggaggaattcaaagatgc 375
             ||||||||||||||||||||
Sbjct: 52867 gaggaggaattcaaagatgc 52848
to top
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940123D9, complete sequence
          Length = 121336

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    ggaggaggagggcggcggcc 194
              ||||||||||||||||||||
Sbjct: 117422 ggaggaggagggcggcggcc 117441
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 175      ggaggaggagggcggcggcc 194
                ||||||||||||||||||||
Sbjct: 22034219 ggaggaggagggcggcggcc 22034200
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 175     ggaggaggagggcggcggcc 194
               ||||||||||||||||||||
Sbjct: 7540679 ggaggaggagggcggcggcc 7540698
to top
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0035N21, complete sequence
          Length = 128331

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   gggaggaggagggcggcggc 193
             ||||||||||||||||||||
Sbjct: 58744 gggaggaggagggcggcggc 58763


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,058,122
Number of Sequences: 3902068
Number of extensions: 4058122
Number of successful extensions: 79824
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79193
Number of HSP's gapped (non-prelim): 631
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top