ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDde... 77 2e-14
2PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLD... 62 5e-10
3PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDb... 62 9e-10
4PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLD... 58 1e-08
5PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDb... 53 4e-07
6PLDG2_ARATH (Q9T051) Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLD... 36 0.053
7TOB1_MOUSE (Q61471) Tob1 protein (Transducer of erbB-2 1) 28 8.4

>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD|
           delta)
          Length = 868

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 12/91 (13%)
 Frame = +3

Query: 210 LLLHGDLDIQIVEAKCLPNMDLMTERIRKCFTGYGACRTNCGNSNTKP------------ 353
           +LLHGDLD++IV+A+ LPNMD+ +E +R+ FT   AC       +  P            
Sbjct: 10  MLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIR 69

Query: 354 DVRKIITSDPYVSVCLSGATVAXTRVINNSE 446
             RK+ITSDPYV+V +  AT+A TRV+ NS+
Sbjct: 70  SHRKVITSDPYVTVVVPQATLARTRVLKNSQ 100



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>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD|
           gamma 1) (Choline phosphatase) (Lipophosphodiesterase
           II) (Lecithinase D)
          Length = 858

 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 37/78 (47%), Positives = 48/78 (61%)
 Frame = +3

Query: 213 LLHGDLDIQIVEAKCLPNMDLMTERIRKCFTGYGACRTNCGNSNTKPDVRKIITSDPYVS 392
           LLHG+LDI + EAK LPNMD    R+    +G G  +   G  ++K      ITSDPYV+
Sbjct: 39  LLHGNLDIWVKEAKHLPNMDGFHNRLGGMLSGLGRKKVE-GEKSSK------ITSDPYVT 91

Query: 393 VCLSGATVAXTRVINNSE 446
           V +SGA +  T VI+NSE
Sbjct: 92  VSISGAVIGRTFVISNSE 109



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>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta|
           2) (PLDdelta1)
          Length = 915

 Score = 61.6 bits (148), Expect = 9e-10
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
 Frame = +3

Query: 168 PHTMGKHAAETGTS----LLLHGDLDIQIVEAKCLPNMDLMTERIRKCFTGYGACRTNCG 335
           PH+ G H    G +    LLLHG+LDI +  A  LPN+DL  + +   F G         
Sbjct: 95  PHSPGMHIVPFGKASLKVLLLHGNLDIWVSCANNLPNLDLFHKTLGVVFGGM-------- 146

Query: 336 NSNTKPDVRKIITSDPYVSVCLSGATVAXTRVINNSE 446
            +  +  + K ITSDPYVS+ ++GA +  T VI+NSE
Sbjct: 147 TNMIEGQLSKKITSDPYVSISVAGAVIGRTYVISNSE 183



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>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD|
           gamma 3)
          Length = 866

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 36/79 (45%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +3

Query: 213 LLHGDLDIQIVEAKCLPNMD-LMTERIRKCFTGYGACRTNCGNSNTKPDVRKIITSDPYV 389
           LLHG+LDI + EAK LPNMD      +   F G G         N+       ITSDPYV
Sbjct: 43  LLHGNLDIWVKEAKHLPNMDGFHNTLVGGMFFGLGRRNHKVDGENSSK-----ITSDPYV 97

Query: 390 SVCLSGATVAXTRVINNSE 446
           +V +SGA +  T VI+NSE
Sbjct: 98  TVSISGAVIGRTFVISNSE 116



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>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta|
           1) (PLDbeta)
          Length = 967

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 32/79 (40%), Positives = 43/79 (54%)
 Frame = +3

Query: 210 LLLHGDLDIQIVEAKCLPNMDLMTERIRKCFTGYGACRTNCGNSNTKPDVRKIITSDPYV 389
           LL HG+LDI I  AK LPNMD+  + +   F               +  +   ITSDPYV
Sbjct: 152 LLSHGNLDIWIYHAKNLPNMDMFHKTLGDMFGRLPG--------KIEGQLTSKITSDPYV 203

Query: 390 SVCLSGATVAXTRVINNSE 446
           SV ++GA +  T V++NSE
Sbjct: 204 SVSVAGAVIGRTYVMSNSE 222



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>PLDG2_ARATH (Q9T051) Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD|
           gamma 2)
          Length = 824

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 372 TSDPYVSVCLSGATVAXTRVINNSE 446
           TSDPYV+V +SGA +  T VI+NSE
Sbjct: 51  TSDPYVTVSISGAVIGRTFVISNSE 75



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>TOB1_MOUSE (Q61471) Tob1 protein (Transducer of erbB-2 1)|
          Length = 363

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 401 EANRNIRITSNDLPHVWFCVRIPAVSPTSTIASEAFPDPFGHEIHIGKTF 252
           E ++ I+ + N  P V+    +P   P S+++S   P PFGH   +  TF
Sbjct: 123 ELDKEIKNSFNPEPQVF----MPISDPASSVSSSPSP-PFGHSAAVSPTF 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,459,318
Number of Sequences: 219361
Number of extensions: 1286428
Number of successful extensions: 2902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2897
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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