ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl40a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase... 31 0.83
2GNRHR_SHEEP (P32237) Gonadotropin-releasing hormone receptor (Gn... 28 9.2
3GNRHR_HORSE (O18821) Gonadotropin-releasing hormone receptor (Gn... 28 9.2
4GNRHR_BOVIN (P32236) Gonadotropin-releasing hormone receptor (Gn... 28 9.2
5FPRP_MOUSE (Q9WV91) Prostaglandin F2 receptor negative regulator... 28 9.2

>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor|
           [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)
           (Cellobiase); Beta-xylosidase (EC 3.2.1.37)
           (1,4-beta-D-xylan xylohydrolase) (Xylan
           1,4-beta-xylosidase)]
          Length = 654

 Score = 31.2 bits (69), Expect = 0.83
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 51  ASARARDLVSRLTLAEKVGFLVN 119
           A+ RA DLVSR+TLAEK G +++
Sbjct: 65  AAERAADLVSRMTLAEKAGVMMH 87



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>GNRHR_SHEEP (P32237) Gonadotropin-releasing hormone receptor (GnRH receptor)|
           (GnRH-R)
          Length = 328

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 122 LVHQEPHLLRQRQPRHQVPGARRR 51
           ++HQ+PH L+  Q ++ +P AR R
Sbjct: 241 VLHQDPHKLQLNQSKNNIPQARLR 264



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>GNRHR_HORSE (O18821) Gonadotropin-releasing hormone receptor (GnRH receptor)|
           (GnRH-R)
          Length = 328

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 122 LVHQEPHLLRQRQPRHQVPGARRR 51
           ++HQ+PH L+  Q ++ +P AR R
Sbjct: 241 VLHQDPHKLQLNQSKNNIPRARLR 264



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>GNRHR_BOVIN (P32236) Gonadotropin-releasing hormone receptor (GnRH receptor)|
           (GnRH-R)
          Length = 328

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 122 LVHQEPHLLRQRQPRHQVPGARRR 51
           ++HQ+PH L+  Q ++ +P AR R
Sbjct: 241 VLHQDPHKLQLNQSKNNIPRARLR 264



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>FPRP_MOUSE (Q9WV91) Prostaglandin F2 receptor negative regulator precursor|
           (Prostaglandin F2-alpha receptor regulatory protein)
           (Prostaglandin F2-alpha receptor-associated protein)
           (CD315 antigen)
          Length = 879

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 115 TRNPTFSASVSRDTRSLARADAV 47
           T  PTF+ASV  DT S+ R D +
Sbjct: 685 TSGPTFNASVHSDTPSVTRGDLI 707


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,307,452
Number of Sequences: 219361
Number of extensions: 171225
Number of successful extensions: 1002
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 80,573,946
effective HSP length: 19
effective length of database: 76,406,087
effective search space used: 1833746088
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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