>ref|XM_414970.1| PREDICTED: Gallus gallus similar to smoothened (LOC416674), mRNA
          Length = 2286

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 46   gagtgagaaggcggccagcaa 66
            |||||||||||||||||||||
Sbjct: 1122 gagtgagaaggcggccagcaa 1142

>gb|AC157561.10| Mus musculus chromosome 7, clone RP23-356A20, complete sequence
          Length = 232927

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 400   tgggaggaagtgtgacattgt 420
             |||||||||||||||||||||
Sbjct: 79709 tgggaggaagtgtgacattgt 79689

>gb|AF019977.1|AF019977 Gallus gallus smoothened mRNA, partial cds
          Length = 3183

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 46   gagtgagaaggcggccagcaa 66
            |||||||||||||||||||||
Sbjct: 1220 gagtgagaaggcggccagcaa 1240

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 856792 aaatccagcgggtggggaggggga 856815

>ref|NM_186788.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  tccgccgcattccggcggcg 396
            ||||||||||||||||||||
Sbjct: 1339 tccgccgcattccggcggcg 1320

>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence
          Length = 138419

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   gcatccgaagctgccctgcc 181
             ||||||||||||||||||||
Sbjct: 54472 gcatccgaagctgccctgcc 54453

>gb|AC135048.2| Homo sapiens chromosome 16 clone RP11-1072A3, complete sequence
          Length = 177719

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   gtggggagggggacgcagga 152
             ||||||||||||||||||||
Sbjct: 80135 gtggggagggggacgcagga 80154

>gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete sequence
          Length = 230945

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    gcatccgaagctgccctgcc 181
              ||||||||||||||||||||
Sbjct: 207474 gcatccgaagctgccctgcc 207493

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 961685 aaatccagcgggtggggaggggga 961708

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 906779 aaatccagcgggtggggaggggga 906802

>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    gcaggaacgaggcgagcatc 166
              ||||||||||||||||||||
Sbjct: 204349 gcaggaacgaggcgagcatc 204368

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 907978 aaatccagcgggtggggaggggga 908001

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     tccgccgcattccggcggcg 396
               ||||||||||||||||||||
Sbjct: 7872336 tccgccgcattccggcggcg 7872317

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 851609 aaatccagcgggtggggaggggga 851632

>gb|AF237671.1|AF237671 Chlamydomonas reinhardtii copper response defect 1 protein (Crd1)
            mRNA, complete cds
          Length = 2176

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 366  cgccggacgcgtccgccgca 385
            ||||||||||||||||||||
Sbjct: 1489 cgccggacgcgtccgccgca 1470

>gb|AF226628.1|AF226628 Chlamydomonas reinhardtii copper response target 1 protein (CRD1)
            gene, complete cds; nuclear gene for chloroplast product
          Length = 4205

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 366  cgccggacgcgtccgccgca 385
            ||||||||||||||||||||
Sbjct: 3523 cgccggacgcgtccgccgca 3504

>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0523A04
          Length = 149049

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    tccgccgcattccggcggcg 396
              ||||||||||||||||||||
Sbjct: 121334 tccgccgcattccggcggcg 121315

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 122     aaatccagcgcgtggggaggggga 145
               |||||||||| |||||||||||||
Sbjct: 1040328 aaatccagcgggtggggaggggga 1040351

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 122     aaatccagcgcgtggggaggggga 145
               |||||||||| |||||||||||||
Sbjct: 1038668 aaatccagcgggtggggaggggga 1038691

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 122     aaatccagcgcgtggggaggggga 145
               |||||||||| |||||||||||||
Sbjct: 2199446 aaatccagcgagtggggaggggga 2199423

>gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence
          Length = 107859

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  ggctgctcagctcagtttac 292
            ||||||||||||||||||||
Sbjct: 1610 ggctgctcagctcagtttac 1629

>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 810361 aaatccagcgggtggggaggggga 810384

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 122    aaatccagcgcgtggggaggggga 145
              |||||||||| |||||||||||||
Sbjct: 906837 aaatccagcgggtggggaggggga 906860


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,637,365
Number of Sequences: 3902068
Number of extensions: 2637365
Number of successful extensions: 49394
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49230
Number of HSP's gapped (non-prelim): 164
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)