>IPO8_HUMAN (O15397) Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)|
          Length = 1037

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 45/144 (31%), Positives = 68/144 (47%)
 Frame = +2

Query: 23  LIKLICKIFWSSIYLEIPKQLFEPNIFNAWIVLFLNLLERPVPLEGQPSDPDARKAWGWW 202
           L K I KIF++ +   +P QL        W+ +F  +++R VP E    D D R    WW
Sbjct: 200 LQKQILKIFYALVQYALPLQLVNNQTMTTWMEIFRTIIDRTVPPETLHIDEDDRPELVWW 259

Query: 203 KVKKWITHILNRLYSRFADMKVHKPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLP 382
           K KKW  HI+ RL+ R+        E   F++ F K YA  I    L++L+  R   Y+ 
Sbjct: 260 KCKKWALHIVARLFERYGSAGNVTKEYFEFSEFFLKTYAVGIQQVLLKILDQYRQKEYVA 319

Query: 383 ERVINLILQYLTNSLTKNSMYQLM 454
            RV+     YL   +  +  ++ M
Sbjct: 320 PRVLQQAFNYLNQGVVHSITWKQM 343

>IPO8_MOUSE (Q7TMY7) Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)|
          Length = 1010

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 44/135 (32%), Positives = 64/135 (47%)
 Frame = +2

Query: 23  LIKLICKIFWSSIYLEIPKQLFEPNIFNAWIVLFLNLLERPVPLEGQPSDPDARKAWGWW 202
           L K I KIF++ +   +P QL        W+ +F  +++R VP E    D D R    WW
Sbjct: 200 LQKQILKIFYALVQYALPLQLVNHQTMTTWMEIFRTIIDRTVPPETLQIDEDDRPELVWW 259

Query: 203 KVKKWITHILNRLYSRFADMKVHKPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLP 382
           K KKW  HI+ RL+ R+        E   F++ F K YA  I    L++L+  R   Y+ 
Sbjct: 260 KCKKWALHIVARLFERYGSPGNVTKEYFEFSEFFLKTYAVGIQQVLLKILDQYRQKEYIA 319

Query: 383 ERVINLILQYLTNSL 427
            RV+     YL   +
Sbjct: 320 PRVLQQAFNYLNQGV 334

>IPO7_HUMAN (O95373) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)|
          Length = 1038

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 40/134 (29%), Positives = 63/134 (47%)
 Frame = +2

Query: 29  KLICKIFWSSIYLEIPKQLFEPNIFNAWIVLFLNLLERPVPLEGQPSDPDARKAWGWWKV 208
           K I KIF++ +   +P +L        WI +   ++ R VP E    + D R    WWK 
Sbjct: 201 KQIFKIFYALVQYTLPLELINQQNLTEWIEILKTVVNRDVPNETLQVEEDDRPELPWWKC 260

Query: 209 KKWITHILNRLYSRFADMKVHKPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPER 388
           KKW  HIL RL+ R+        E   FA++F K +A  +    L++L   +   Y+  R
Sbjct: 261 KKWALHILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPR 320

Query: 389 VINLILQYLTNSLT 430
           V+   L Y+   ++
Sbjct: 321 VLQQTLNYINQGVS 334

>IPO7_MOUSE (Q9EPL8) Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)|
          Length = 1038

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 39/134 (29%), Positives = 63/134 (47%)
 Frame = +2

Query: 29  KLICKIFWSSIYLEIPKQLFEPNIFNAWIVLFLNLLERPVPLEGQPSDPDARKAWGWWKV 208
           K I KIF++ +   +P +L        W+ +   ++ R VP E    + D R    WWK 
Sbjct: 201 KQIFKIFYALVQYTLPLELINQQNLTEWVEILKTVVNRDVPNETLQVEEDDRPELPWWKC 260

Query: 209 KKWITHILNRLYSRFADMKVHKPESKAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPER 388
           KKW  HIL RL+ R+        E   FA++F K +A  +    L++L   +   Y+  R
Sbjct: 261 KKWALHILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPR 320

Query: 389 VINLILQYLTNSLT 430
           V+   L Y+   ++
Sbjct: 321 VLQQTLNYINQGVS 334

>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5|
          Length = 1048

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
 Frame = +2

Query: 11  EVADLIKLICKIFWSSIYLEIPKQLFEPNIFNAWIVLFLNLLERPVPLEG-QPSDPDARK 187
           ++ +L+KLI KI+    Y ++P  L     F  W   F++++++P+P E    SD + R 
Sbjct: 207 QIGELVKLIIKIYKFVSYHDLPFTLQRSESFTPWACFFVSIIQQPLPQEVLSISDIEVRS 266

Query: 188 AWGWWKVKKWITHILNRLYSRFADMKV-HKPESKAFAQMFQKNYAGKILGCHLQLLNAIR 364
              W K KKW    L RL+ R+A   +  K +   F QM+ + +  + L      +    
Sbjct: 267 KNPWVKCKKWALANLYRLFQRYASTSLTRKFQYDEFKQMYCEEFLTQFLQVVFDQIEKWG 326

Query: 365 TGG-YLPERVINLILQYLTNSLTKNSMYQLM 454
           TG  +L +  +  IL ++   + + + ++L+
Sbjct: 327 TGQLWLSDECLYYILNFVEQCVVQKTTWKLV 357

>VNS1_BTV1S (P33472) Nonstructural protein NS1|
          Length = 552

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GK+  C +QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDVEGKMKRCRVQLLEDYRKSGMMDEAV 122

>US10_HCMVA (P09728) Unique short US10 glycoprotein precursor (gpUS10) (HXLF2)|
          Length = 185

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 35  ICKIFWSSIYLEIPKQLFEPNIFNAWIVLFLNLLERPVPLEGQPSDPDARKAWGW 199
           IC ++W  +     ++  EP  F    V+  ++L+  V L GQ   P   +A  W
Sbjct: 13  ICLLWWLGVVAAATEETREPTYFTCGCVIQNHVLKGAVKLYGQFPSPKTLRASAW 67

>VNS1_BTV1A (P33471) Nonstructural protein NS1|
          Length = 552

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GKI  C  QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDIEGKIKRCGAQLLEDYRKSGMMEEAV 122

>VNS1_BTV20 (P32931) Nonstructural protein NS1|
          Length = 552

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GKI  C  QLL   R  G + E +
Sbjct: 87  KSFSQPYEEDIEGKIKRCGAQLLEDYRKSGMMEEAI 122

>Y489_MYCBO (P64700) Hypothetical protein Mb0489c|
          Length = 348

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 317 AGKILGCHLQLLNAIRTGGYLPERVINLILQYLTNSLTKN 436
           AGK  G  LQ++N    G  LP+  +   L   T+SLTKN
Sbjct: 271 AGK--GLELQIINFNTLGFSLPKETVQSTLNEFTSSLTKN 308

>Y479_MYCTU (P64699) Hypothetical protein Rv0479c/MT0497|
          Length = 348

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 317 AGKILGCHLQLLNAIRTGGYLPERVINLILQYLTNSLTKN 436
           AGK  G  LQ++N    G  LP+  +   L   T+SLTKN
Sbjct: 271 AGK--GLELQIINFNTLGFSLPKETVQSTLNEFTSSLTKN 308

>VNS1_BTV2A (P35931) Nonstructural protein NS1|
          Length = 552

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GK+  C  QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDVEGKMKRCGAQLLEDYRKSGMMDEAV 122

>VNS1_BTV13 (P35933) Nonstructural protein NS1|
          Length = 552

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GK+  C  QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDVEGKMKRCGAQLLEDYRKSGMMDEAV 122

>VNS1_BTV10 (P07131) Nonstructural protein NS1|
          Length = 552

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GK+  C  QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDVEGKMKRCGAQLLEDYRKSGMMDEAV 122

>VNS1_BTV17 (P14245) Nonstructural protein NS1|
          Length = 552

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GK+  C  QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDVEGKMKRCGAQLLEDYRKSGMMNEAV 122

>VNS1_BTV11 (P35932) Nonstructural protein NS1|
          Length = 552

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 KAFAQMFQKNYAGKILGCHLQLLNAIRTGGYLPERV 391
           K+F+Q ++++  GK+  C  QLL   R  G + E V
Sbjct: 87  KSFSQPYEEDVEGKMKRCGAQLLEDYRKSGMMNEAV 122

>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (AtATM)
          Length = 3856

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 189  LGAGGKSRNGLPIS*TVYTVGLLI*RFINQRVKLLLKCFKRTMLEKFWDAIYS 347
            + AGGK+  GLP+S   + +G++           L+ CF   +    WD +Y+
Sbjct: 1664 IAAGGKAVPGLPVSMGNWKLGMV----------SLISCFSPVLQFPTWDVLYN 1706

>ARGB_GRATL (Q6B8Z0) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 285

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 203 KVKKWITHILNRLYSRFADMKVHKPESKAFAQMF----QKNYAGKILGCHLQLLNAIRTG 370
           KV K +  +LNR  S  A     K  +   A  F    + NY GK+   +++++N + + 
Sbjct: 103 KVNKDLVTLLNRS-SNLAVGLSGKDANLVVASSFFPDQKDNYTGKVQQVNIEIVNLLLSS 161

Query: 371 GYLP 382
           GY+P
Sbjct: 162 GYIP 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,934,321
Number of Sequences: 219361
Number of extensions: 1466362
Number of successful extensions: 4269
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4267
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)