ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl40a01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 50.1 bits (25), Expect = 0.001 Identities = 28/29 (96%) Strand = Plus / Minus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 ||||||||||||||| ||||||||||||| Sbjct: 1403024 gcgatggcggcagcgcccgcgacgccggc 1402996
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 50.1 bits (25), Expect = 0.001 Identities = 28/29 (96%) Strand = Plus / Plus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 ||||||||||||||| ||||||||||||| Sbjct: 1651032 gcgatggcggcagcgcccgcgacgccggc 1651060
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.006 Identities = 27/28 (96%) Strand = Plus / Plus Query: 92 ggcagcgaccgcgacgccggcggcgagt 119 |||||||||||||||||||||| ||||| Sbjct: 5058568 ggcagcgaccgcgacgccggcgccgagt 5058595
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 gcggcagcgaccgcgacgccggcg 113 |||||||||||||||||||||||| Sbjct: 14657166 gcggcagcgaccgcgacgccggcg 14657143
>dbj|AP004855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1538_H05 Length = 132282 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 gcggcagcgaccgcgacgccggcg 113 |||||||||||||||||||||||| Sbjct: 47964 gcggcagcgaccgcgacgccggcg 47941
>dbj|AK108038.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C11, full insert sequence Length = 1094 Score = 48.1 bits (24), Expect = 0.006 Identities = 24/24 (100%) Strand = Plus / Minus Query: 90 gcggcagcgaccgcgacgccggcg 113 |||||||||||||||||||||||| Sbjct: 94 gcggcagcgaccgcgacgccggcg 71
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 46.1 bits (23), Expect = 0.023 Identities = 29/31 (93%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcg 113 |||||||||| ||||| |||||||||||||| Sbjct: 285587 ggcgatggcgacagcggccgcgacgccggcg 285557 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 gccggcgatggcggcagcgaccgc 103 ||||||||||||||||||| |||| Sbjct: 278227 gccggcgatggcggcagcgcccgc 278250
>gb|AE008766.1| Salmonella typhimurium LT2, section 70 of 220 of the complete genome Length = 27275 Score = 44.1 bits (22), Expect = 0.091 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 gcgatggcggcagcgaccgcgacgcc 109 ||||||||||||||| |||||||||| Sbjct: 26011 gcgatggcggcagcgcccgcgacgcc 26036
>ref|NM_191282.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 283 ggcggcagcgacagcgacggcggcggcga 311
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 gaccgcgacgccggcggcgag 118 ||||||||||||||||||||| Sbjct: 298098 gaccgcgacgccggcggcgag 298118
>emb|AL627270.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 6/20 Length = 266050 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Minus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 |||||||| |||||| ||||||||||||| Sbjct: 174131 gcgatggcagcagcgcccgcgacgccggc 174103
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cccatggccggcgatggcggcagcg 98 |||||||||||||| |||||||||| Sbjct: 23008073 cccatggccggcgaaggcggcagcg 23008049
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 31721638 ggcggcagcgacagcgacggcggcggcga 31721666 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 ccatggccggcgatggcggcagcga 99 |||||||||||||||||| |||||| Sbjct: 19673255 ccatggccggcgatggcgtcagcga 19673279 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 32950398 ccgcgacgccggcggcgag 32950380
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 135370 ggcggcagcgacagcgacggcggcggcga 135398
>dbj|AP004362.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0014E04 Length = 146710 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 ccatggccggcgatggcggcagcga 99 |||||||||||||||||| |||||| Sbjct: 141707 ccatggccggcgatggcgtcagcga 141731
>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1166B08 Length = 147667 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Plus Query: 75 ccatggccggcgatggcggcagcga 99 |||||||||||||||||| |||||| Sbjct: 21877 ccatggccggcgatggcgtcagcga 21901
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 catggccggcgatggcggcag 96 ||||||||||||||||||||| Sbjct: 3230498 catggccggcgatggcggcag 3230478
>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652A05 Length = 150455 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cccatggccggcgatggcggcagcg 98 |||||||||||||| |||||||||| Sbjct: 74617 cccatggccggcgaaggcggcagcg 74593
>gb|AE005035.1| Halobacterium sp. NRC-1 section 66 of 170 of the complete genome Length = 10016 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgcc 109 ||||||||||||||||||||| Sbjct: 5174 ggcggcagcgaccgcgacgcc 5194
>dbj|AK108553.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E08, full insert sequence Length = 1111 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Plus Query: 89 ggcggcagcgaccgcgacgccggcggcga 117 |||||||||||| |||||| ||||||||| Sbjct: 366 ggcggcagcgacagcgacggcggcggcga 394
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 0.36 Identities = 27/29 (93%) Strand = Plus / Plus Query: 84 gcgatggcggcagcgaccgcgacgccggc 112 |||||||| |||||| ||||||||||||| Sbjct: 1500794 gcgatggcagcagcgcccgcgacgccggc 1500822
>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a, complete sequence Length = 58157 Score = 42.1 bits (21), Expect = 0.36 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 cgatggcggcagcgaccgcgacgcc 109 |||||||||||||||| |||||||| Sbjct: 56713 cgatggcggcagcgacagcgacgcc 56689
>ref|NM_187740.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2655 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 83 ggcgatggcggcagcggcagcgacggcggcgg 114
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 3504141 ggcgatggcggcagcggcagcgacggcggcgg 3504110
>gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete sequence Length = 274210 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 gagccagctgttttcccccatggc 81 |||||||||||||||| ||||||| Sbjct: 154947 gagccagctgttttcctccatggc 154970
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cgatggcggcagcgaccgcg 104 |||||||||||||||||||| Sbjct: 777633 cgatggcggcagcgaccgcg 777652
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcagcgaccgcgacgccggc 112 |||||||||||||||||||| Sbjct: 197937 gcagcgaccgcgacgccggc 197918
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 6234 ggcgatggcggcagcggcagcgacggcggcgg 6265
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ggcagcgaccgcgacgccggcggc 115 ||||||| |||||||||||||||| Sbjct: 836188 ggcagcggccgcgacgccggcggc 836165
>gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone BACR48A11, complete sequence Length = 157507 Score = 40.1 bits (20), Expect = 1.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcagcgaccgcgacgccggcggcgagtg 120 |||||||| |||||||||||| |||||| Sbjct: 75431 gcagcgactgcgacgccggcgtcgagtg 75458
>gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, region 53D-54A, BAC clone BACR11M15, complete sequence Length = 170994 Score = 40.1 bits (20), Expect = 1.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcagcgaccgcgacgccggcggcgagtg 120 |||||||| |||||||||||| |||||| Sbjct: 148069 gcagcgactgcgacgccggcgtcgagtg 148096
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 3504252 ggcgatggcggcagcggcagcgacggcggcgg 3504221
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 40.1 bits (20), Expect = 1.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 83 ggcgatggcggcagcgaccgcgacgccggcgg 114 |||||||||||||||| | |||||| |||||| Sbjct: 21794 ggcgatggcggcagcggcagcgacggcggcgg 21763
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cggcgatggcggcagcgacc 101 |||||||||||||||||||| Sbjct: 3054778 cggcgatggcggcagcgacc 3054759
>gb|AE005044.1| Halobacterium sp. NRC-1 section 75 of 170 of the complete genome Length = 13431 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgaccgcgacgccggcggc 115 |||||||||||||||||||| Sbjct: 264 gcgaccgcgacgccggcggc 283
>ref|NM_211792.1| Eremothecium gossypii AGR065Wp (AGR065W), mRNA Length = 981 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ggcagcgaccgcgacgccggcggc 115 ||||||| |||||||||||||||| Sbjct: 312 ggcagcggccgcgacgccggcggc 289
>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete sequence Length = 260337 Score = 40.1 bits (20), Expect = 1.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 93 gcagcgaccgcgacgccggcggcgagtg 120 |||||||| |||||||||||| |||||| Sbjct: 211194 gcagcgactgcgacgccggcgtcgagtg 211221
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gaccgcgacgccggcggcga 117 |||||||||||||||||||| Sbjct: 267385 gaccgcgacgccggcggcga 267404
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 gcgacgccggcggcgagtg 120 ||||||||||||||||||| Sbjct: 3406432 gcgacgccggcggcgagtg 3406414
>ref|NM_196698.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0046P18.7), mRNA Length = 852 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 46 ccgcgacgccggcggcgag 28
>ref|XM_473024.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1146 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 agcgaccgcgacgccggcg 113 ||||||||||||||||||| Sbjct: 144 agcgaccgcgacgccggcg 126
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0077O14, complete sequence Length = 124915 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 ggccggcgatggcggcagc 97 ||||||||||||||||||| Sbjct: 98065 ggccggcgatggcggcagc 98083
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 cggcagcgaccgcgacgccggcg 113 |||| |||||||||||||||||| Sbjct: 1432954 cggccgcgaccgcgacgccggcg 1432976 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 347310 ccgcgacgccggcggcgag 347328
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 96 gcgaccgcgacgccggcggcgag 118 |||||||||| |||||||||||| Sbjct: 2284653 gcgaccgcgaagccggcggcgag 2284675
>ref|XM_418991.1| PREDICTED: Gallus gallus similar to Zinc finger CCHC domain containing protein 2 (LOC420905), mRNA Length = 8142 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 cagtcacagtcctcgttcc 53 ||||||||||||||||||| Sbjct: 1064 cagtcacagtcctcgttcc 1046
>gb|AY626369.1| Edwardsiella ictaluri clone pBK180GH putative regulatory system sensor kinase gene, partial cds; positive response regulator of capsular synthesis gene, complete cds; and sensor histidine kinase gene, partial cds Length = 2737 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 96 gcgaccgcgacgccggcgg 114 ||||||||||||||||||| Sbjct: 165 gcgaccgcgacgccggcgg 183
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 cggcagcgaccgcgacgccggcg 113 |||| |||||||||||||||||| Sbjct: 2659080 cggccgcgaccgcgacgccggcg 2659102 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 1077855 ccgcgacgccggcggcgag 1077873
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 gcgacgccggcggcgagtg 120 ||||||||||||||||||| Sbjct: 1590124 gcgacgccggcggcgagtg 1590106
>ref|XM_534935.2| PREDICTED: Canis familiaris similar to Cat eye syndrome critical region protein 2 (LOC477738), mRNA Length = 4445 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cagtcacagtcctcgttcc 53 ||||||||||||||||||| Sbjct: 4084 cagtcacagtcctcgttcc 4102
>gb|AF417111.1| Ralstonia solanacearum PehC (pehC) and ExuT (exuT) genes, complete cds Length = 3969 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 cggcgatggcggcagcgac 100 ||||||||||||||||||| Sbjct: 313 cggcgatggcggcagcgac 331
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 91 cggcagcgaccgcgacgccggcg 113 |||| |||||||||||||||||| Sbjct: 1724402 cggccgcgaccgcgacgccggcg 1724380 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 958847 ccgcgacgccggcggcgag 958865
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 gatggcggcagcgaccgcg 104 ||||||||||||||||||| Sbjct: 120535 gatggcggcagcgaccgcg 120553
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 gatggcggcagcgaccgcg 104 ||||||||||||||||||| Sbjct: 3322 gatggcggcagcgaccgcg 3340
>gb|BC099290.1| Xenopus laevis cDNA clone IMAGE:6935924, partial cds Length = 1350 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 ttgcagctgcacaacttgc 28 ||||||||||||||||||| Sbjct: 598 ttgcagctgcacaacttgc 616
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cgatggcggcagcgaccgc 103 ||||||||||||||||||| Sbjct: 2803492 cgatggcggcagcgaccgc 2803510
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 82 cggcgatggcggcagcgaccgcgacgc 108 ||||||||||| |||||||||| |||| Sbjct: 140347 cggcgatggcgacagcgaccgcaacgc 140321
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 645027 ccgcgacgccggcggcgag 645009
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 agcgaccgcgacgccggcg 113 ||||||||||||||||||| Sbjct: 24741898 agcgaccgcgacgccggcg 24741880 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 gatggcggcagcgaccgcg 104 ||||||||||||||||||| Sbjct: 20389902 gatggcggcagcgaccgcg 20389920
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ggccggcgatggcggcagc 97 ||||||||||||||||||| Sbjct: 10617767 ggccggcgatggcggcagc 10617749
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 15345757 ccgcgacgccggcggcgag 15345739
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 63120 ccgcgacgccggcggcgag 63102
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 cgaccgcgacgccggcggc 115 ||||||||||||||||||| Sbjct: 4772259 cgaccgcgacgccggcggc 4772277
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 16626 ccgcgacgccggcggcgag 16608
>dbj|AK111482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B08, full insert sequence Length = 1181 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 gatggcggcagcgaccgcg 104 ||||||||||||||||||| Sbjct: 745 gatggcggcagcgaccgcg 727
>ref|NM_209947.1| Eremothecium gossypii AEL266Wp (AEL266W), mRNA Length = 987 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 82 cggcgatggcggcagcgaccgcgacgc 108 ||||||||||| |||||||||| |||| Sbjct: 750 cggcgatggcgacagcgaccgcaacgc 724
>dbj|AK064933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O19, full insert sequence Length = 2137 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 147 ccgcgacgccggcggcgag 129
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 38.2 bits (19), Expect = 5.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 91 cggcagcgaccgcgacgccggcggcga 117 |||| ||||||||||||||||| |||| Sbjct: 1800121 cggcggcgaccgcgacgccggccgcga 1800147
>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence Length = 230278 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 85 cgatggcggcagcgaccgc 103 ||||||||||||||||||| Sbjct: 18091 cgatggcggcagcgaccgc 18109
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 cggcagcgaccgcgacgcc 109 ||||||||||||||||||| Sbjct: 402758 cggcagcgaccgcgacgcc 402740
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 100 ccgcgacgccggcggcgag 118 ||||||||||||||||||| Sbjct: 15353998 ccgcgacgccggcggcgag 15353980
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ggccggcgatggcggcagc 97 ||||||||||||||||||| Sbjct: 10689311 ggccggcgatggcggcagc 10689293
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 agcgaccgcgacgccggcg 113 ||||||||||||||||||| Sbjct: 131421 agcgaccgcgacgccggcg 131403
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 95 agcgaccgcgacgccggcg 113 ||||||||||||||||||| Sbjct: 3614 agcgaccgcgacgccggcg 3596 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 927,787 Number of Sequences: 3902068 Number of extensions: 927787 Number of successful extensions: 82083 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78375 Number of HSP's gapped (non-prelim): 3708 length of query: 121 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 100 effective length of database: 17,151,101,840 effective search space: 1715110184000 effective search space used: 1715110184000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
