ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl39h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BCTN5_BOVIN (P19660) Bactenecin-5 precursor (Bac5) (Cathelicidin... 29 5.1
2WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 28 8.7
3PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 12... 28 8.7

>BCTN5_BOVIN (P19660) Bactenecin-5 precursor (Bac5) (Cathelicidin-2) (PR-42)|
          Length = 176

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 33  RPPIQLTIFSPLHP---PSVLPHFREPLHAPLSP 125
           RPPI+   + P  P   P + P  R P   PL P
Sbjct: 138 RPPIRPPFYPPFRPPIRPPIFPPIRPPFRPPLGP 171



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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)|
           (Protein kinase with no lysine 2) (Protein kinase,
           lysine-deficient 2)
          Length = 2297

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = +3

Query: 3   PQKLP-----QRRQARPPIQL-TIFSPLHPPSVLPHFREPL--HAPLSPSRSTGQP 146
           PQ LP     Q+  A P + + ++ +P  PPS+  HF +P    AP+ P  ST  P
Sbjct: 663 PQSLPSLGAYQQPTAAPGLPVGSVPAPACPPSLQQHFPDPAMSFAPVLPPPSTPMP 718



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>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore|
           membrane protein of 121 kDa) (P145)
          Length = 1199

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 6   QKLPQRRQARPPIQLTIFSPLHP--PSVLPHFREPLHAPLSPSRSTGQP 146
           Q+ P    + PP   T+ +P  P  PS+L     PL  PL+ + S  +P
Sbjct: 580 QESPAPSSSEPPEAATVAAPSPPKTPSLLAPLVSPLTGPLASTSSDSKP 628


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,294,647
Number of Sequences: 219361
Number of extensions: 484253
Number of successful extensions: 1773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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