ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017414.1| Zea mays clone EL01N0331F10.c mRNA sequence Length = 1298 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 225 cggccgtcgccgtcggcggcgg 246 |||||||||||||||||||||| Sbjct: 788 cggccgtcgccgtcggcggcgg 809
>ref|NM_188290.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1428 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ggccgtcgccgtcggcggcgg 246 ||||||||||||||||||||| Sbjct: 125 ggccgtcgccgtcggcggcgg 145
>gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035N09, complete sequence Length = 129468 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgc 186 ||||||||||||||||||||| Sbjct: 116193 cgagcgagcgagcacgcgcgc 116213
>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03 map S20262S, complete sequence Length = 149553 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgc 186 ||||||||||||||||||||| Sbjct: 13735 cgagcgagcgagcacgcgcgc 13755
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 cggccgtcgccgtcggcggcggatc 249 ||||||||| ||||||||||||||| Sbjct: 7675960 cggccgtcgtcgtcggcggcggatc 7675936
>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete sequence Length = 185915 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 cgagcgagcgagcacgcgcgc 186 ||||||||||||||||||||| Sbjct: 132543 cgagcgagcgagcacgcgcgc 132523
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 225 cggccgtcgccgtcggcggcggatc 249 ||||||||| ||||||||||||||| Sbjct: 39330 cggccgtcgtcgtcggcggcggatc 39354
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgc 186 ||||||||||||||||||||| Sbjct: 13297382 cgagcgagcgagcacgcgcgc 13297402 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgagcgagcgagcacgcgcg 185 |||||||||||||||||||| Sbjct: 10896134 cgagcgagcgagcacgcgcg 10896115
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 225 cggccgtcgccgtcggcggcggatc 249 ||||||||| ||||||||||||||| Sbjct: 7673795 cggccgtcgtcgtcggcggcggatc 7673771
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ggccgtcgccgtcggcggcgg 246 ||||||||||||||||||||| Sbjct: 5506756 ggccgtcgccgtcggcggcgg 5506776
>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5, complete sequence Length = 160041 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 cgagcgagcgagcacgcgcgc 186 ||||||||||||||||||||| Sbjct: 38160 cgagcgagcgagcacgcgcgc 38140
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 ggccgtcgccgtcggcggcgg 246 ||||||||||||||||||||| Sbjct: 103596 ggccgtcgccgtcggcggcgg 103616
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgc 186 ||||||||||||||||||||| Sbjct: 13377561 cgagcgagcgagcacgcgcgc 13377581 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgagcgagcgagcacgcgcg 185 |||||||||||||||||||| Sbjct: 10975323 cgagcgagcgagcacgcgcg 10975304
>ref|XM_482025.1| Oryza sativa (japonica cultivar-group), mRNA Length = 342 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggacggccgtcgccgtcggc 241 |||||||||||||||||||| Sbjct: 99 ggacggccgtcgccgtcggc 118
>ref|XM_473980.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 588 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 93 gccgtcgccgtcggcggcgg 74
>ref|XM_466699.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 624 gccgtcgccgtcggcggcgg 605
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 3436237 gccgtcgccgtcggcggcgg 3436218
>ref|NM_185924.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2634 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 157 gccgtcgccgtcggcggcgg 138
>ref|XM_479146.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1816 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 113 gccgtcgccgtcggcggcgg 94
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgcccc 189 |||||||||||||| ||||||||| Sbjct: 32116 cgagcgagcgagcaagcgcgcccc 32139
>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11, complete sequence Length = 177574 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgcccc 189 |||||||||||||| ||||||||| Sbjct: 166695 cgagcgagcgagcaagcgcgcccc 166718
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgagcgagcgagcacgcgcg 185 |||||||||||||||||||| Sbjct: 85654 cgagcgagcgagcacgcgcg 85635
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 gcgaggagcagcgccgggtgctgg 289 ||||||||| |||||||||||||| Sbjct: 1063557 gcgaggagctgcgccgggtgctgg 1063534
>ref|XM_384245.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG04069.1) partial mRNA Length = 3561 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 cctcctcgtcatcttcctcg 43 |||||||||||||||||||| Sbjct: 946 cctcctcgtcatcttcctcg 927
>emb|AL359699.12| Human DNA sequence from clone RP11-130F5 on chromosome 1 Contains a SLAM family member 6 (SLAMF6) pseudogene, the gene for kinase interacting with leukemia-associated gene (KIS) and two CpG islands, complete sequence Length = 105902 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgcgcttctcccaccacacc 67 |||||||||||||||||||| Sbjct: 5501 cgcgcttctcccaccacacc 5482
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08, complete sequence Length = 166951 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 163086 gccgtcgccgtcggcggcgg 163067
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 agcctccgcttcccctcctc 30 |||||||||||||||||||| Sbjct: 113955 agcctccgcttcccctcctc 113974
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 31990220 gccgtcgccgtcggcggcgg 31990201
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggacggccgtcgccgtcggc 241 |||||||||||||||||||| Sbjct: 17265066 ggacggccgtcgccgtcggc 17265085
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 27008548 gccgtcgccgtcggcggcgg 27008567 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 25201597 gccgtcgccgtcggcggcgg 25201578
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 5799586 gccgtcgccgtcggcggcgg 5799567
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cgagcgagcgagcacgcgcgcccc 189 |||||||||||||| ||||||||| Sbjct: 16080946 cgagcgagcgagcaagcgcgcccc 16080969
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 24183360 gccgtcgccgtcggcggcgg 24183379
>dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1316_A04 Length = 87144 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 73026 gccgtcgccgtcggcggcgg 73045
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 115115 gccgtcgccgtcggcggcgg 115096
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 361 gccgtcgccgtcggcggcgg 342
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 18268 gccgtcgccgtcggcggcgg 18249
>emb|AL929174.19| Zebrafish DNA sequence from clone CH211-117C16 in linkage group 12, complete sequence Length = 161610 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tcgagcgagcgagcacgcgc 184 |||||||||||||||||||| Sbjct: 52350 tcgagcgagcgagcacgcgc 52331
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 142101 gccgtcgccgtcggcggcgg 142120
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ggacggccgtcgccgtcggc 241 |||||||||||||||||||| Sbjct: 125691 ggacggccgtcgccgtcggc 125710
>dbj|AP004272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0427D10 Length = 154192 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 11789 gccgtcgccgtcggcggcgg 11808
>dbj|AK111216.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-B05, full insert sequence Length = 2634 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 157 gccgtcgccgtcggcggcgg 138
>dbj|AK071478.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092B08, full insert sequence Length = 1717 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 231 gccgtcgccgtcggcggcgg 250
>dbj|AK071281.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086E05, full insert sequence Length = 1817 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 114 gccgtcgccgtcggcggcgg 95
>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_H02 Length = 124043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 122084 gccgtcgccgtcggcggcgg 122065
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 3684868 gccgtcgccgtcggcggcgg 3684887
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gccgtcgccgtcggcggcgg 246 |||||||||||||||||||| Sbjct: 10927 gccgtcgccgtcggcggcgg 10908
>emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chromosome X, complete sequence Length = 227581 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ccaccacctgtggatctcct 342 |||||||||||||||||||| Sbjct: 19160 ccaccacctgtggatctcct 19179
>gb|AY048670.1| Streptomyces globisporus enediyne antitumor antibiotic C-1027 biosynthetic gene cluster, complete sequence Length = 85163 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 catgaggcggcccaccacct 331 |||||||||||||||||||| Sbjct: 11480 catgaggcggcccaccacct 11499 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,199,430 Number of Sequences: 3902068 Number of extensions: 3199430 Number of successful extensions: 61042 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60242 Number of HSP's gapped (non-prelim): 800 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
