>gb|AC119214.6| Mus musculus chromosome 8, clone RP24-199K4, complete sequence
          Length = 156548

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 70    cccacacccacacacaaccgcccccctcctc 100
             |||||||||||||||| || |||||||||||
Sbjct: 31996 cccacacccacacacacccacccccctcctc 31966

>gb|AC158352.5| Mus musculus chromosome 8, clone RP24-325B16, complete sequence
          Length = 166845

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 70     cccacacccacacacaaccgcccccctcctc 100
              |||||||||||||||| || |||||||||||
Sbjct: 124379 cccacacccacacacacccacccccctcctc 124349

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 90       cccccctcctccccacgctcctc 112
                |||||||||||||||||||||||
Sbjct: 38977449 cccccctcctccccacgctcctc 38977427



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 57       ctcgtctcgcctccccacac 76
                ||||||||||||||||||||
Sbjct: 32851358 ctcgtctcgcctccccacac 32851339

>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0674H09
          Length = 142955

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 90    cccccctcctccccacgctcctc 112
             |||||||||||||||||||||||
Sbjct: 51082 cccccctcctccccacgctcctc 51060

>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696G06
          Length = 142571

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 90     cccccctcctccccacgctcctc 112
              |||||||||||||||||||||||
Sbjct: 142235 cccccctcctccccacgctcctc 142213

>emb|AL022315.1|HS1177I5 Human DNA sequence from clone RP5-1177I5 on chromosome 22q13.1,
             complete sequence
          Length = 96256

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   ccccgcccccggatccagccc 165
             |||||||||||||||||||||
Sbjct: 62797 ccccgcccccggatccagccc 62817

>gb|AC024474.8| Homo sapiens chromosome 15, clone RP11-686I6, complete sequence
          Length = 194973

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 160   cagccccgcggcgccggctccccgg 184
             ||||||||||| |||||||||||||
Sbjct: 30237 cagccccgcggagccggctccccgg 30213

>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     ccctcctccccacgctcctca 113
              |||||||||||||||||||||
Sbjct: 150838 ccctcctccccacgctcctca 150858

>gb|AF497619.1| Homo sapiens 15q11-q13 clone p316L5CpG2 genomic sequence
          Length = 1808

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 160 cagccccgcggcgccggctccccgg 184
           ||||||||||| |||||||||||||
Sbjct: 513 cagccccgcggagccggctccccgg 537

>gb|AC107075.4| Homo sapiens BAC clone RP11-452N17 from 2, complete sequence
          Length = 176425

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   gagactgtgagggagctggat 408
             |||||||||||||||||||||
Sbjct: 35477 gagactgtgagggagctggat 35497

>emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chromosome 4, complete
              sequence
          Length = 204428

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 80     cacacaaccgcccccctcctcccca 104
              |||||||||||||||| ||||||||
Sbjct: 190463 cacacaaccgccccccccctcccca 190439

>gb|AC090681.13| Homo sapiens 12 BAC RP11-369C14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 93582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    cctccccacacccacacaca 85
             ||||||||||||||||||||
Sbjct: 62898 cctccccacacccacacaca 62917

>gb|AC079325.10| Homo sapiens chromosome 17, clone RP11-194J3, complete sequence
          Length = 191746

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ttaaatctgcttggtttctg 388
             ||||||||||||||||||||
Sbjct: 84624 ttaaatctgcttggtttctg 84605

>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
              complete sequence
          Length = 164805

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 420    ttgttattgtacaagatgttttggcatgtacctgga 455
              |||||| ||| ||| ||||||||||| |||||||||
Sbjct: 145029 ttgttactgtgcaaaatgttttggcacgtacctgga 145064



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      agattattctccccaaagtc 20
              ||||||||||||||||||||
Sbjct: 143480 agattattctccccaaagtc 143499

>gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete
             sequence
          Length = 195052

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    cctccccacacccacacaca 85
             ||||||||||||||||||||
Sbjct: 60433 cctccccacacccacacaca 60452

>gb|AC160051.2| Mus musculus BAC clone RP24-395P13 from chromosome 9, complete sequence
          Length = 199433

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     cacccacacacaaccgcccc 93
              ||||||||||||||||||||
Sbjct: 167550 cacccacacacaaccgcccc 167531

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 420      ttgttattgtacaagatgttttggcatgtacctgga 455
                |||||| ||| ||| ||||||||||| |||||||||
Sbjct: 31567346 ttgttactgtgcaaaatgttttggcacgtacctgga 31567381



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        agattattctccccaaagtc 20
                ||||||||||||||||||||
Sbjct: 31565797 agattattctccccaaagtc 31565816

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 143      ttccccgcccccggatccagcccc 166
                ||||||||| ||||||||||||||
Sbjct: 23696863 ttccccgccgccggatccagcccc 23696886

>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ctcgtctcgcctccccacac 76
             ||||||||||||||||||||
Sbjct: 72763 ctcgtctcgcctccccacac 72744

>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1669_F01
          Length = 140019

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 143    ttccccgcccccggatccagcccc 166
              ||||||||| ||||||||||||||
Sbjct: 137963 ttccccgccgccggatccagcccc 137986

>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1058_F07
          Length = 95841

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 143  ttccccgcccccggatccagcccc 166
            ||||||||| ||||||||||||||
Sbjct: 7447 ttccccgccgccggatccagcccc 7470

>dbj|AK069982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034J11, full
           insert sequence
          Length = 2064

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 143 ttccccgcccccggatccagcccc 166
           ||||||||| ||||||||||||||
Sbjct: 127 ttccccgccgccggatccagcccc 150

>dbj|AK066330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061K16, full
           insert sequence
          Length = 2332

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 420 ttgttattgtacaagatgttttggcatgtacctgga 455
           |||||| ||| ||| ||||||||||| |||||||||
Sbjct: 334 ttgttactgtgcaaaatgttttggcacgtacctgga 369

>dbj|AP003396.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-334E6, complete
             sequences
          Length = 191362

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   tttctgagactgtgagggag 402
             ||||||||||||||||||||
Sbjct: 87315 tttctgagactgtgagggag 87334

>emb|CT009718.13| Mouse DNA sequence from clone RP23-95L9 on chromosome 13, complete
             sequence
          Length = 206707

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cctccccacacccacacaca 85
             ||||||||||||||||||||
Sbjct: 29591 cctccccacacccacacaca 29572

>dbj|AB209209.1| Homo sapiens mRNA for Thy-1 cell surface antigen variant protein
          Length = 2427

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 tttctgagactgtgagggag 402
           ||||||||||||||||||||
Sbjct: 465 tttctgagactgtgagggag 446

>gb|M11749.1|HUMTHY1A Human Thy-1 glycoprotein gene, complete cds
          Length = 2806

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 383 tttctgagactgtgagggag 402
           ||||||||||||||||||||
Sbjct: 150 tttctgagactgtgagggag 131

>dbj|AP002409.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-781P6, complete
             sequence
          Length = 180566

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 226   ctgctggtttccccctcttcccca 249
             ||||||| ||||||||||||||||
Sbjct: 71386 ctgctggcttccccctcttcccca 71409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,589,526
Number of Sequences: 3902068
Number of extensions: 3589526
Number of successful extensions: 90419
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90187
Number of HSP's gapped (non-prelim): 232
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)