>RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ|
           protein-like 4)
          Length = 1216

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
 Frame = +3

Query: 57  RRNLTRRRVGLLDLGLNLARNRWAERMTVPEAVALDIPAEE------GSXXXXXXXXXXX 218
           R +L+RR   L    L    NR ++ + VP A  LD+ AEE      G            
Sbjct: 177 RSSLSRRLTSLDPGWLERCHNRVSDLLEVPGACGLDLSAEESQPQMSGKVNIADPDIQSE 236

Query: 219 XLLQASESSADAPATAEEIEAKLRDAQLRRQQFHETLSCKARRAVRSTSQPSQGEDP 389
             +Q+ E+ A  PA       K  +++ R+++++E     A+       QPS G  P
Sbjct: 237 VSVQSPEAIAQQPAQVLSQSPKSINSKGRKRKWNEKGEDFAQ------DQPSSGAGP 287

>SYD_CHLCH (Q3AS30) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 605

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 240 SSADAPATAEEIEAKLRDAQLRRQQFHETLSCKAR 344
           S AD   T+EE+  K R   LRR++ HE +  ++R
Sbjct: 124 SVADELPTSEELRLKYRFLDLRREKLHENIIFRSR 158

>SYD_PELLD (Q3B3A1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 604

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 246 ADAPATAEEIEAKLRDAQLRRQQFHETLSCKAR 344
           AD   T+EE+  K R   LRR++ HE +  ++R
Sbjct: 127 ADEVQTSEELRLKYRFIDLRREKIHENIIFRSR 159

>CEF1_USTMA (Q4P652) Pre-mRNA-splicing factor CEF1|
          Length = 820

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = +3

Query: 225 LQASESSA--DAPATAEEIEAKLRDAQLRRQQFHETLSCKARRAV---RSTSQPSQ 377
           LQA+ SS   + PA +EE +A  RDA+L RQ   E    +ARR+    R+  +P+Q
Sbjct: 513 LQANSSSRLDNEPAMSEE-DAAERDARLARQAAEEEARSEARRSQVVRRNLPRPAQ 567

>SSRP1_MOUSE (Q08943) Structure-specific recognition protein 1 (SSRP1)|
           (Recombination signal sequence recognition protein)
           (T160)
          Length = 708

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 231 ASESSADAPATAEEIEAKLRDAQLRRQQFHETLSCKARRAVRSTSQPSQGEDP 389
           A E  ++A A++   E      + +R+Q       K R++ R +S+  +G+DP
Sbjct: 492 AEEFDSNASASSSSNEGDSDREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDP 544

>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556|
          Length = 395

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 149 LRYRHSLRP-PIPGQV*PQIEQTHAPSRQIPPGIARIRRMDCRCRCSRW 6
           LR RH  RP P P Q+   +   H P+++       +  + CR   SRW
Sbjct: 250 LRTRHPHRPAPQPVQLRDPLPGRHRPAKESSTARCPVLSIPCRLSHSRW 298

>PRTP_PRVIF (P11871) Probable processing and transport protein (Infected cell|
           protein 18.5)
          Length = 724

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 246 ADAPATAEEIEAKLRDAQLRRQQFHETLSCKARRAVRSTSQPSQGEDPKQRRLEV 410
           ADA A A+   A LRDA+ RR+ + + LS ++  ++    +  + E  K  R+ V
Sbjct: 443 ADAVAWADLPAAALRDAERRRRLYADRLSRRSAASLAQCVREQRRELEKTLRVNV 497

>NOL10_HUMAN (Q9BSC4) Nucleolar protein 10|
          Length = 688

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 18  ATATVHSPNSC-DPRRNLTRRRVGLLDLGLN 107
           AT T+     C DPR   TR RVGLLD  LN
Sbjct: 192 ATGTIEGRVECWDPR---TRNRVGLLDCALN 219

>PDLI4_HUMAN (P50479) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   PTRAATATVHSPNSCDPRRNLTRRRVGLLDLGLNLAR 116
           P + +T  V  P S DP R L R R   +DLG  + R
Sbjct: 156 PAQMSTLHVSPPPSADPARGLPRSRDCRVDLGSEVYR 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,276,556
Number of Sequences: 219361
Number of extensions: 747481
Number of successful extensions: 2109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)