>ref|XM_466210.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3911

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 252 gcgccggcaacggccgaagagatcgaggccaagctccgcgacgcccaactccggaggcag 311
           |||||||| || || || ||||||||||||||||||||||| ||  | ||||||||||||
Sbjct: 276 gcgccggccaccgcggaggagatcgaggccaagctccgcgatgcggacctccggaggcag 335

                                        
Query: 312 caattccatgaaacattatcatgcaaagc 340
           ||||| |||||| | ||||| ||||||||
Sbjct: 336 caatttcatgaagcgttatcgtgcaaagc 364



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 188 ggtggccagggtgccgcggcggatcaggaggaggctcctcc 228
           ||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 218 ggtggccagggtgccgccgcggatcaggaggcggctcctcc 258



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Plus

                                                                       
Query: 369 ccatctcagggggaggatcccaagcagcggcgccttgaagtgaagcttgtggctgctaag 428
           |||||||||| ||||||||| ||| ||||   ||||||||  ||||||||||||||  ||
Sbjct: 393 ccatctcaggaggaggatcctaagaagcg---ccttgaagcaaagcttgtggctgccgag 449

                
Query: 429 cagaa 433
           |||||
Sbjct: 450 cagaa 454

>dbj|AK073875.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074B12, full
           insert sequence
          Length = 3913

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 252 gcgccggcaacggccgaagagatcgaggccaagctccgcgacgcccaactccggaggcag 311
           |||||||| || || || ||||||||||||||||||||||| ||  | ||||||||||||
Sbjct: 276 gcgccggccaccgcggaggagatcgaggccaagctccgcgatgcggacctccggaggcag 335

                                        
Query: 312 caattccatgaaacattatcatgcaaagc 340
           ||||| |||||| | ||||| ||||||||
Sbjct: 336 caatttcatgaagcgttatcgtgcaaagc 364



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 188 ggtggccagggtgccgcggcggatcaggaggaggctcctcc 228
           ||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 218 ggtggccagggtgccgccgcggatcaggaggcggctcctcc 258



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Plus

                                                                       
Query: 369 ccatctcagggggaggatcccaagcagcggcgccttgaagtgaagcttgtggctgctaag 428
           |||||||||| ||||||||| ||| ||||   ||||||||  ||||||||||||||  ||
Sbjct: 393 ccatctcaggaggaggatcctaagaagcg---ccttgaagcaaagcttgtggctgccgag 449

                
Query: 429 cagaa 433
           |||||
Sbjct: 450 cagaa 454

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                         
Query: 188      ggtggccagggtgccgcggcggatcaggaggaggctcctcc 228
                ||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 21074062 ggtggccagggtgccgccgcggatcaggaggcggctcctcc 21074102



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                            
Query: 252      gcgccggcaacggccgaagagatcgaggccaagctccgcgacgcccaactccggaggcag 311
                |||||||| || || || ||||||||||||||||||||||| ||  | ||||||||||||
Sbjct: 21074120 gcgccggccaccgcggaggagatcgaggccaagctccgcgatgcggacctccggaggcag 21074179



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Plus

                                                                            
Query: 369      ccatctcagggggaggatcccaagcagcggcgccttgaagtgaagcttgtggctgctaag 428
                |||||||||| ||||||||| ||| ||||   ||||||||  ||||||||||||||  ||
Sbjct: 21074768 ccatctcaggaggaggatcctaagaagcg---ccttgaagcaaagcttgtggctgccgag 21074824

                     
Query: 429      cagaa 433
                |||||
Sbjct: 21074825 cagaa 21074829

>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_F08
          Length = 105979

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                      
Query: 188   ggtggccagggtgccgcggcggatcaggaggaggctcctcc 228
             ||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 75807 ggtggccagggtgccgccgcggatcaggaggcggctcctcc 75847



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Plus

                                                                         
Query: 252   gcgccggcaacggccgaagagatcgaggccaagctccgcgacgcccaactccggaggcag 311
             |||||||| || || || ||||||||||||||||||||||| ||  | ||||||||||||
Sbjct: 75865 gcgccggccaccgcggaggagatcgaggccaagctccgcgatgcggacctccggaggcag 75924



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Plus

                                                                         
Query: 369   ccatctcagggggaggatcccaagcagcggcgccttgaagtgaagcttgtggctgctaag 428
             |||||||||| ||||||||| ||| ||||   ||||||||  ||||||||||||||  ||
Sbjct: 76513 ccatctcaggaggaggatcctaagaagcg---ccttgaagcaaagcttgtggctgccgag 76569

                  
Query: 429   cagaa 433
             |||||
Sbjct: 76570 cagaa 76574

>ref|XM_472603.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3342

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 300 ctccggaggcagcaattccatgaa 323
           ||||||||||||||||||||||||
Sbjct: 142 ctccggaggcagcaattccatgaa 165

>dbj|AK067590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G22, full
           insert sequence
          Length = 2565

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 300 ctccggaggcagcaattccatgaa 323
           ||||||||||||||||||||||||
Sbjct: 363 ctccggaggcagcaattccatgaa 386

>ref|NM_192944.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 801

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 200 gccgcggcggatcaggaggagg 221
           ||||||||||||||||||||||
Sbjct: 406 gccgcggcggatcaggaggagg 427

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 200      gccgcggcggatcaggaggagg 221
                ||||||||||||||||||||||
Sbjct: 25298187 gccgcggcggatcaggaggagg 25298166

>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1158C05
          Length = 145514

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 200   gccgcggcggatcaggaggagg 221
             ||||||||||||||||||||||
Sbjct: 95231 gccgcggcggatcaggaggagg 95210

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 10      cgagagcagcgacagcgacag 30
               |||||||||||||||||||||
Sbjct: 2490739 cgagagcagcgacagcgacag 2490719

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    tacttcacagccatctcagg 378
              ||||||||||||||||||||
Sbjct: 111482 tacttcacagccatctcagg 111501

>gb|AC159704.1| Trypanosoma brucei chromosome 3 clone RPCI93-6N20, complete sequence
          Length = 157906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    tacttcacagccatctcagg 378
              ||||||||||||||||||||
Sbjct: 111482 tacttcacagccatctcagg 111501

>gb|AF003135.3| Caenorhabditis elegans cosmid W03F11, complete sequence
          Length = 81587

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   aattccatgaaacattatca 332
             ||||||||||||||||||||
Sbjct: 15280 aattccatgaaacattatca 15261

>ref|XM_359533.1| Magnaporthe grisea 70-15 hypothetical protein (MG05244.4) partial
            mRNA
          Length = 7110

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 279  gccaagctccgcgacgccca 298
            ||||||||||||||||||||
Sbjct: 6685 gccaagctccgcgacgccca 6704

>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   gcttgtggctgctaagcaga 432
             ||||||||||||||||||||
Sbjct: 73421 gcttgtggctgctaagcaga 73402

>emb|AL360215.15| Human DNA sequence from clone RP11-535D18 on chromosome 6 Contains a
             CpG island, complete sequence
          Length = 106582

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   agcaattccatgaaacatta 329
             ||||||||||||||||||||
Sbjct: 15187 agcaattccatgaaacatta 15168

>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    gggttcgccggtggccaggg 198
              ||||||||||||||||||||
Sbjct: 345126 gggttcgccggtggccaggg 345145

>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    gggttcgccggtggccaggg 198
              ||||||||||||||||||||
Sbjct: 104513 gggttcgccggtggccaggg 104532

>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    gggttcgccggtggccaggg 198
              ||||||||||||||||||||
Sbjct: 120333 gggttcgccggtggccaggg 120352

>gb|AY634335.1| Pinus radiata putative LEA protein (ifg8612) gene, partial cds
          Length = 1328

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  atttggggttaaacctggcc 113
           ||||||||||||||||||||
Sbjct: 260 atttggggttaaacctggcc 241

>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown,
             complete sequence
          Length = 221601

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   agggggaggatcccaagcag 395
             ||||||||||||||||||||
Sbjct: 32848 agggggaggatcccaagcag 32867

>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  acattatcatgcaaagcaag 343
            ||||||||||||||||||||
Sbjct: 2529 acattatcatgcaaagcaag 2510

>gb|AC156945.2| Pan troglodytes BAC clone CH251-464H12 from chromosome unknown,
           complete sequence
          Length = 184973

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 agggggaggatcccaagcag 395
           ||||||||||||||||||||
Sbjct: 156 agggggaggatcccaagcag 137

>gb|AC107027.9| Homo sapiens 3 BAC RP11-517B11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171562

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   ggccgaagagatcgaggcca 282
             ||||||||||||||||||||
Sbjct: 57712 ggccgaagagatcgaggcca 57731


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,574,634
Number of Sequences: 3902068
Number of extensions: 2574634
Number of successful extensions: 51509
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51325
Number of HSP's gapped (non-prelim): 184
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)