ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl39f06 |
|---|---|
| Clone Library Name | barley_pub |
>HAM1_CLOTE (Q891I4) HAM1 protein homolog| Length = 201 Score = 36.6 bits (83), Expect = 0.031 Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Frame = +1 Query: 310 KSVIAKISEKVTNLKELPVKVEEIKKQLTMMGNVIRQIGTVY-LADD 447 K ++ +++ KV +LKE+ + VE + +LT MGN +++ T+Y + DD Sbjct: 18 KDILCELNLKVVSLKEVGINVEVEEDELTFMGNALKKALTLYNMIDD 64
>CYOE_BUCAI (P57540) Protoheme IX farnesyltransferase (EC 2.5.1.-) (Heme O| synthase) Length = 285 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 432 YRAYLPYNIAHHGQLLLYFLNFYWQFLQISNLFRN 328 + YL YN LL +NFYW FL SN+ +N Sbjct: 225 FLGYLSYNFL----LLSSIVNFYWSFLSYSNIKKN 255
>NIFS_FRASE (Q9Z5X5) Cysteine desulfurase (EC 2.8.1.7) (Nitrogenase| metalloclusters biosynthesis protein nifS) Length = 419 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Frame = +2 Query: 89 SRQRCCLLDSTADLTRFALARAPVRLDHTGRSFGTYPAVLLYRPRSVS---LQKIKWPR 256 S RCC D T AL R PV + TG A LY P+ V K W R Sbjct: 174 SAGRCCCADVTQ-----ALGRVPVEFERTGVDLAVSSAHKLYGPKGVGALIASKDAWSR 227
>NDUA5_HUMAN (Q16718) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 5 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 13 kDa-B subunit) (Complex I-13Kd-B) (CI-13Kd-B) (Complex I subunit B13) Length = 115 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +1 Query: 223 IC*SPKDQMAEAVLIVVTKIGDILLEEATKSVIAKISEKVTNLKELPVKVEEIKKQL 393 +C +P +++ I+ TKI D+L E + K +E++TN K VK E K+L Sbjct: 15 VCNTPHERLR----ILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKL 67
>VTI13_ARATH (Q9LVP9) Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport| v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) Length = 221 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -2 Query: 187 ERTTSVIKSDGSPRERKACEICSGVEKAAALTR 89 ++ TS I DG +++ EI SGVE+A AL + Sbjct: 21 KKCTSAIALDGEQKKQNLSEIKSGVEEAEALVK 53
>PGK_EUPCR (O02608) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 418 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1 Query: 274 TKIGDILLEEATKSVIAKISEKVTN---LKELPVKVEEIKKQLTMMGNV 411 TK G+ILL E + + + + V N +K P KVE + QLT +G++ Sbjct: 111 TKDGNILLLENLRFYLEEEGKGVINGEKVKADPTKVESFRSQLTRLGDL 159
>XKR4_TETNG (Q49LS9) XK-related protein 4| Length = 498 Score = 28.9 bits (63), Expect = 6.6 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = +2 Query: 5 SEHELNRRNIHPWLRPEDESVSQASLVSSRQRCC 106 SEH + + +HP +P+ A + RCC Sbjct: 24 SEHSGSVQGLHPGAQPDSAGAGDADFANGESRCC 57
>SECY_PEA (Q9XQU4) Preprotein translocase secY subunit, chloroplast precursor| (CpSecY) Length = 527 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -3 Query: 423 YLPYNIAHHGQLLLYFLNFYWQFLQI 346 YLP+NI LL+ F N+Y+ FLQ+ Sbjct: 402 YLPFNI-----LLIAFFNYYYTFLQL 422
>ACDD2_METAC (Q8TJC2) Acetyl-CoA decarbonylase/synthase complex delta subunit 2| (ACDS complex delta subunit 2) (Corrinoid/iron-sulfur component small subunit 2) Length = 436 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +2 Query: 53 EDESVSQASLVSSRQRCCLLDSTADLTRFALARAPVRLDH 172 + E +++A+ VS +RC L ++ +L A+A A ++ DH Sbjct: 239 DPEVLARAAEVSEGERCLLASASLNLDYAAIAEAALKYDH 278
>ACDD1_METAC (Q8TRZ8) Acetyl-CoA decarbonylase/synthase complex delta subunit 1| (ACDS complex delta subunit 1) (Corrinoid/iron-sulfur component small subunit 1) Length = 436 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +2 Query: 53 EDESVSQASLVSSRQRCCLLDSTADLTRFALARAPVRLDH 172 + E +++A+ VS +RC L ++ +L A+A A ++ DH Sbjct: 239 DPEVLARAAEVSEGERCLLASASLNLDYAAIAEAALKYDH 278
>RPOC_WEIHE (P96177) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1046 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/52 (28%), Positives = 30/52 (57%) Frame = +1 Query: 265 IVVTKIGDILLEEATKSVIAKISEKVTNLKELPVKVEEIKKQLTMMGNVIRQ 420 +++ ++ D+ +E+TKS + VT+LKE P +E+ KQ+ + R+ Sbjct: 572 LLLDRMKDLGYDESTKSGLTVGVADVTDLKEKPEIIEDAHKQVATVTKQFRR 623
>Y1053_METJA (Q58453) Hypothetical protein MJ1053| Length = 163 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 4/42 (9%) Frame = +1 Query: 277 KIGDILLEEATKSVIAKIS----EKVTNLKELPVKVEEIKKQ 390 K G++ +EE K + A + EK+T++K+L ++E++KK+ Sbjct: 98 KRGELNIEEVEKFLEAVVRKEELEKITDIKKLEEEIEKLKKE 139
>MDTG_SALTY (Q8ZQ25) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -1 Query: 425 PICLITLPIMVSCFFISSTFTGNSFRLVTFSEILAMTLLVASSSK---MSPIFVTTM 264 P+ IT ++ CF ++ F +F V+ E+L + +VAS + +FVTT+ Sbjct: 171 PVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRLVLSLFVTTL 227
>MDTG_SALTI (Q8Z7L7) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -1 Query: 425 PICLITLPIMVSCFFISSTFTGNSFRLVTFSEILAMTLLVASSSK---MSPIFVTTM 264 P+ IT ++ CF ++ F +F V+ E+L + +VAS + +FVTT+ Sbjct: 171 PVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRLVLSLFVTTL 227
>MDTG_SALPA (Q5PGY0) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -1 Query: 425 PICLITLPIMVSCFFISSTFTGNSFRLVTFSEILAMTLLVASSSK---MSPIFVTTM 264 P+ IT ++ CF ++ F +F V+ E+L + +VAS + +FVTT+ Sbjct: 171 PVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRLVLSLFVTTL 227
>MDTG_SALCH (Q57QK4) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -1 Query: 425 PICLITLPIMVSCFFISSTFTGNSFRLVTFSEILAMTLLVASSSK---MSPIFVTTM 264 P+ IT ++ CF ++ F +F V+ E+L + +VAS + +FVTT+ Sbjct: 171 PVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRLVLSLFVTTL 227
>GAG_MLVRD (P11269) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30; Nucleoprotein p10] Length = 536 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -3 Query: 438 KVYRAYLPYNIAHHGQLLLYFLNFYWQ 358 + YR Y PY+ HGQ ++F WQ Sbjct: 372 EAYRRYTPYDPEDHGQETSVSMSFIWQ 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,357,962 Number of Sequences: 219361 Number of extensions: 1157457 Number of successful extensions: 3769 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3767 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
