>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)|
          Length = 1159

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 109  MFGSTNPFGQSSASAFGQTSSNPFEAQSGFGQ-TSTATNPFGSPTTAF 249
            MFG++ P   SSA AFG  S     A +GFG  T+TATN    P+T F
Sbjct: 1011 MFGTSTP-APSSAFAFGNQSGTNPAAPAGFGGITNTATN--NPPSTGF 1055

>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 118 STNPFGQSSASAFGQTSSNPFEAQSGFGQTSTATNPFGSPTTAFGAQ 258
           S+ P+GQ S S +GQ++       SG+GQ+S  ++   +  T +G Q
Sbjct: 29  SSQPYGQQSYSGYGQSADT-----SGYGQSSYGSSYGQTQNTGYGTQ 70



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 112 FGSTNPFG--QSSASAFGQTSSNPFEAQSGFGQTSTATNPFGS 234
           +GST  +G  QSS S++GQ SS P     G+GQ    ++  GS
Sbjct: 76  YGSTGGYGSSQSSQSSYGQQSSYP-----GYGQQPAPSSTSGS 113

>YI94_SCHPO (Q9UT55) Protein C806.04c|
          Length = 440

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 257 CAPKAVVGLPKGLVAVLVWPNPDWASKG---LLEVCPKA 150
           C    VVGLP GL   +    P W   G   ++E CPKA
Sbjct: 402 CKADVVVGLPDGLYEKIAKDLPHWERTGKYAVVEFCPKA 440

>NUPL1_DROME (Q9VDV3) Probable nucleoporin Nup58|
          Length = 546

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 118 STNPFGQSSAS-AFGQTSSNPFEAQSGFGQTSTATNPFG--SPTTAFG 252
           +T  FG  +A+ AFG  +S P     GFG TSTA   FG  + T AFG
Sbjct: 60  ATPAFGAPAATPAFGAPASTP-----GFGATSTAAPAFGTAAATPAFG 102

>NUPL2_BRARE (Q6P0U9) Nucleoporin-like 2|
          Length = 414

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +1

Query: 112 FGSTNPF-------GQSSASAFGQTSSNPFEAQSGFGQTSTATNPFGSPTTA 246
           FGS + F       GQ S    G  SS+ F + SGFG +S   + FGS   A
Sbjct: 306 FGSASGFSFKTATAGQGSGFGSGFGSSSGFGSSSGFGSSSGFGSAFGSAAPA 357



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 112 FGSTNPFGQSSASAFGQTS-SNPFEAQSGFGQTSTATNPFGSPTTAF 249
           FGS  P   S+ S FG TS S+P    +GFG     + P  S T +F
Sbjct: 207 FGSPGPGFGSATSGFGNTSLSSP---PAGFGGAGFGSGPQSSSTFSF 250



 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 139 SSASAFGQTSSNPFEAQSGFGQTSTATNPFGSPTTAFGA 255
           +SA  FG        A SGFG TS ++ P G     FG+
Sbjct: 202 ASAPGFGSPGPGFGSATSGFGNTSLSSPPAGFGGAGFGS 240

>NUP42_YEAST (P49686) Nucleoporin NUP42 (Nuclear pore protein NUP42)|
          Length = 430

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 112 FGSTNPFG---QSSASAFGQTSSNPFEAQSGFGQTSTATNPFGSPTTAFGA 255
           FGS+ P      S+ SAFG     P    +GFG  +  +NPFG    + G+
Sbjct: 97  FGSSAPINVNPPSTTSAFGA----PSFGSTGFGAMAATSNPFGKSPGSMGS 143

>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 112 FGSTNPFG--QSSASAFGQTSSNPFEAQSGFGQTSTATNPFGS 234
           +GST  +G  QSS S++GQ SS P     G+GQ    ++  GS
Sbjct: 75  YGSTGGYGSSQSSQSSYGQQSSYP-----GYGQQPAPSSTSGS 112

>NUPL_HUMAN (P52594) Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)|
           (Rev-interacting protein) (Rev/Rex activation
           domain-binding protein)
          Length = 562

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
 Frame = +1

Query: 31  AAVDPILXXXXXXXXXXXXXXXXXXXMFGS--------TNPFGQSSASAFGQT-SSNPFE 183
           A +D +                    +FG+        T P   S  + FG T S+NPF 
Sbjct: 378 AELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQPASSSVPAPFGATPSTNPFV 437

Query: 184 AQSGFGQTSTATNPF-----GSPTTAFG 252
           A +G    +++TNPF     G+    FG
Sbjct: 438 AAAG-PSVASSTNPFQTNARGATAATFG 464

>NUPL_BOVIN (Q2TA45) Nucleoporin-like protein RIP (HIV-1 Rev-binding protein|
           homolog)
          Length = 562

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
 Frame = +1

Query: 31  AAVDPILXXXXXXXXXXXXXXXXXXXMFGS--------TNPFGQSSASAFGQT-SSNPFE 183
           A +D +                    +FG+        T P   S  + FG T S+NPF 
Sbjct: 378 AELDSVFSSAATSSNAYTSTSNASSNVFGTVPVGASAQTQPASSSVPAPFGATPSTNPFV 437

Query: 184 AQSGFGQTSTATNPF-----GSPTTAFG 252
           A +G    +++TNPF     G+    FG
Sbjct: 438 AAAG-PSVASSTNPFQTNARGATAATFG 464

>GAMP_PROCL (Q7M3P2) Gastrolith matrix protein (Fragment)|
          Length = 96

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 112 FGSTNPFGQSSASAFGQTSSNPFEAQSGFGQTSTATNPFGSP---TTAFGA 255
           FGSTN         FG +   P    +GFG    A+  FGSP   + AFG+
Sbjct: 15  FGSTN---------FGSSGFGPSLGSTGFGSAGFASPGFGSPSLGSAAFGS 56

>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (CAN protein)
          Length = 2090

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
 Frame = +1

Query: 112  FGSTNP------FGQSSASAFGQTSSNPFEAQSG--FGQTSTAT 219
            FG ++P      FGQS+A AFGQ   +P   Q G  FG TS AT
Sbjct: 1786 FGQSSPNTGGGLFGQSNAPAFGQ---SPGFGQGGSVFGGTSAAT 1826



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 112  FGSTNPFGQSSASAFGQTS-SNP-FEAQSGFGQTSTATNPFGSPTTAFGA 255
            FG  + FGQS++SA    S S P F +   FGQ +++T P  +  + FGA
Sbjct: 1726 FGQASVFGQSASSAASVFSFSQPGFSSVPAFGQPASST-PTSTSGSVFGA 1774

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 124 NPFGQSSASAFGQTSSNPFEAQSG--FGQTSTATNPFGS 234
           N F Q+  + FG   ++     SG  FG T+T +NPFGS
Sbjct: 107 NAFAQNKPTGFGNFGTS---TSSGGLFGTTNTTSNPFGS 142

>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline|
           helicase 4)
          Length = 1156

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 15/61 (24%)
 Frame = +1

Query: 118 STNPFGQSSASAFGQTSSNPFEAQ-------SGF--GQTSTATNPFGS-----PT-TAFG 252
           S++ FG  S + FG TSS+    Q       SGF   +TST+   FGS     PT T FG
Sbjct: 334 SSSSFGSGSKAGFGGTSSSGIGGQKPGATESSGFPTKETSTSGGTFGSGFGGKPTSTGFG 393

Query: 253 A 255
           A
Sbjct: 394 A 394

>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)|
          Length = 1778

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
 Frame = +1

Query: 109 MFGSTNPFGQSSASAFGQTSSNPFEAQSGFGQTSTATN--------PFGS--PTTAFGAQ 258
           M   T  FGQS+  AFG T++    +  G   ++TA N         FGS   +T FG+Q
Sbjct: 84  MSSGTGMFGQSNTPAFGGTNNATNPSGGGLFGSNTANNNANTGTSFSFGSNAGSTGFGSQ 143



 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 115 GSTNPFGQSSASA---FGQTSSNPFEAQSGFGQTSTATNPFGSPTT 243
           G T  FGQ++      FG  S+ P    + FG  +T+T  FG  TT
Sbjct: 12  GGTGAFGQNNQQTGGLFGSNSNTP--GNTLFGSQNTSTTGFGQNTT 55

>NTRK1_HUMAN (P04629) High affinity nerve growth factor receptor precursor (EC|
           2.7.10.1) (Neurotrophic tyrosine kinase receptor type 1)
           (TRK1 transforming tyrosine kinase protein) (p140-TrkA)
           (Trk-A)
          Length = 796

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 118 STNPFGQSSASAFGQTSSNPFE 183
           + NPFGQ+SAS       NPFE
Sbjct: 363 AANPFGQASASIMAAFMDNPFE 384

>NUPL1_HUMAN (Q9BVL2) Nucleoporin p58/p45 (Nucleoporin-like 1)|
          Length = 599

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 112 FGSTNPFGQSSASA----FGQTSSNPFEAQSGFGQTSTATNPFGSP 237
           FG+++ FG S+  A    FG T+       +GFG +ST+   F +P
Sbjct: 513 FGTSSGFGCSTTGASTFGFGTTNKPSGSLSAGFGSSSTSGFNFSNP 558

>P53_MOUSE (P02340) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 390

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 150 RFWADL*QPFRSPIRV----RPDQHRHQSLRQPDHRLRCADGDHLA 275
           + W     P  S +R     +  QH  + +R+  H  RC+DGD LA
Sbjct: 141 QLWVSATPPAGSRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLA 186

>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)|
          Length = 1186

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 118 STNPFGQSSASAFGQTSSNPFEAQSGFGQTSTATNPFGSPTTAFG 252
           S N   QSS S F Q S+ P     GFG +S+     GS    FG
Sbjct: 650 SLNSNSQSS-SLFSQGSAQPANTSLGFGSSSSLGATLGSALGGFG 693

>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
 Frame = +1

Query: 112 FGSTNPFGQSSASAFGQTSSNPFEAQSGFGQTSTATNP----------FGSPTTAFGA 255
           FG+T+  GQ S +  G           G   T+T T+           FG P T FGA
Sbjct: 301 FGNTSTLGQPSTNTMGLFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQPNTGFGA 358

>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 112 FGSTNPFGQSSASAFGQTSSNPFE-AQSGFGQTSTATNPFGS--PTTAFG 252
           FG  N  G  S    G T  +P+  A SGFG  STAT+ FGS   ++AFG
Sbjct: 74  FGGGNTCG--SGFGGGSTGGSPYGGASSGFGG-STATSGFGSGEKSSAFG 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,044,059
Number of Sequences: 219361
Number of extensions: 744580
Number of successful extensions: 2631
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2619
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)